Tools for analyzing Micro Array experiments


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Documentation for package ‘maanova’ version 1.46.1

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abf1 Data for a 18-array Affymetrix experiment
adjPval Generate FDR adjusted P values for F test result.
arrayview View the layout of input data
consensus Build consensus tree out of bootstrap cluster result
dyeswapfilter Gene filter for dye-swap experiment
fill.missing Fill in missing data
fitmaanova Fit ANOVA model for Micro Array experiment
fom Figure of Merit
geneprofile Expression plot for selected genes
gridcheck Plot grid-by-grid data comparison for arrays
kidney Kidney Data from CAMDA
kidney.raw Kidney Data from CAMDA
macluster Clustering analysis for Microarray experiment
matest Statistical test for Microarray experiment
PairContrast Pairwise comparison matrix
read.madata Read Microarray data
resiplot Residual plot for Microarray Experiment
riplot Ratio intensity plot for 2-dye Microarray experiment
Rmaanova.version Display the current version of the package
subset.madata Subsetting Microarray data objects
summarytable Summarize the matest result.
transform.madata Micro Array experiment data transformation
varplot Variance component plot
volcano Volcano plot for F test results
write.madata Write Micro Array data to a TAB delimited simple text file