ProteoWizard
Public Member Functions | Public Attributes | List of all members
pwiz::data::pepxml::SearchSummary Struct Reference

Database search settings. More...

#include <MinimumPepXML.hpp>

Public Member Functions

 SearchSummary ()
 
void write (XMLWriter &writer) const
 
void read (std::istream &is)
 
bool operator== (const SearchSummary &that) const
 
bool operator!= (const SearchSummary &that) const
 

Public Attributes

std::string baseName
 Full path location of mzXML file for this search run (without the .mzXML extension) More...
 
std::string searchEngine
 SEQUEST, Mascot, COMET, etc. More...
 
std::string precursorMassType
 average or monoisotopic More...
 
std::string fragmentMassType
 average or monoisotopic More...
 
std::string searchID
 Format of file storing the runner up peptides (if not present in pepXML) More...
 
SearchDatabase searchDatabase
 runner up search hit data type extension (e.g. .tgz) More...
 
size_t search_id
 matches id in search hit More...
 
EnzymaticSearchConstraint enzymaticSearchConstraint
 
std::vector< AminoAcidModificationaminoAcidModifications
 
std::vector< ParameterPtrparameters
 

Detailed Description

Database search settings.

Definition at line 424 of file MinimumPepXML.hpp.

Constructor & Destructor Documentation

§ SearchSummary()

pwiz::data::pepxml::SearchSummary::SearchSummary ( )
inline

Definition at line 426 of file MinimumPepXML.hpp.

426 {}

Member Function Documentation

§ write()

void pwiz::data::pepxml::SearchSummary::write ( XMLWriter writer) const

Referenced by testSearchSummary().

§ read()

void pwiz::data::pepxml::SearchSummary::read ( std::istream &  is)

Referenced by testSearchSummary().

§ operator==()

bool pwiz::data::pepxml::SearchSummary::operator== ( const SearchSummary that) const

§ operator!=()

bool pwiz::data::pepxml::SearchSummary::operator!= ( const SearchSummary that) const

Member Data Documentation

§ baseName

std::string pwiz::data::pepxml::SearchSummary::baseName

Full path location of mzXML file for this search run (without the .mzXML extension)

Definition at line 430 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ searchEngine

std::string pwiz::data::pepxml::SearchSummary::searchEngine

SEQUEST, Mascot, COMET, etc.

Definition at line 433 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ precursorMassType

std::string pwiz::data::pepxml::SearchSummary::precursorMassType

average or monoisotopic

Definition at line 436 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ fragmentMassType

std::string pwiz::data::pepxml::SearchSummary::fragmentMassType

average or monoisotopic

Definition at line 439 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ searchID

std::string pwiz::data::pepxml::SearchSummary::searchID

Format of file storing the runner up peptides (if not present in pepXML)

Definition at line 443 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ searchDatabase

SearchDatabase pwiz::data::pepxml::SearchSummary::searchDatabase

runner up search hit data type extension (e.g. .tgz)

Definition at line 446 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ search_id

size_t pwiz::data::pepxml::SearchSummary::search_id

matches id in search hit

Definition at line 449 of file MinimumPepXML.hpp.

§ enzymaticSearchConstraint

EnzymaticSearchConstraint pwiz::data::pepxml::SearchSummary::enzymaticSearchConstraint

Definition at line 451 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ aminoAcidModifications

std::vector<AminoAcidModification> pwiz::data::pepxml::SearchSummary::aminoAcidModifications

Definition at line 452 of file MinimumPepXML.hpp.

Referenced by makeSearchSummary().

§ parameters

std::vector<ParameterPtr> pwiz::data::pepxml::SearchSummary::parameters

Definition at line 454 of file MinimumPepXML.hpp.


The documentation for this struct was generated from the following file: