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cv.hpp
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1 //
2 // $Id: cv.hpp 9934 2016-08-02 17:48:03Z chambm $
3 //
4 //
5 // Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2007 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 // This file was generated by cvgen.
23 //
24 // Do not edit this file! Your changes will be lost next time cvgen is run -
25 // see pwiz/scripts/misc/update_cv.bat for info on how that works.
26 // Instead, edit cvgen.cpp itself, or the cv.inl include file if adding static
27 // code or data.
28 //
29 
30 
31 #ifndef _CV_HPP_
32 #define _CV_HPP_
33 
34 
35 #include <string>
36 #include <vector>
37 #include <map>
39 
40 
41 // [psi-ms.obo]
42 #define _PSI_MS_OBO_
43 // format-version: 1.2
44 // data-version: 4.0.1
45 // date: 15:07:2016 14:16
46 // saved-by: Gerhard Mayer
47 // auto-generated-by: OBO-Edit 2.3
48 // import: http://www.berkeleybop.org/ontologies/pato/pato.obo
49 // import: http://www.berkeleybop.org/ontologies/uo/uo.obo
50 // default-namespace: MS
51 // namespace-id-rule: * MS:$sequence(7,0,9999999)$
52 // remark: namespace: MS
53 // remark: version: 4.0.1
54 // remark: release date: 2016-07-15
55 // remark: coverage: Mass spectrometer output files and spectra interpretation
56 // remark: creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu>
57 // remark: creator: Andreas Bertsch <bertsch <-at-> informatik.uni-tuebingen.de>
58 // remark: creator: Marius Kallhardt <Marius.Kallhardt <-at-> bdal.de>
59 // remark: creator: Eric Deutsch <edeutsch <-at-> systemsbiology.org>
60 // remark: creator: Fredrik Levander <fredrik.levander <-at-> immun.lth.se>
61 // remark: creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch>
62 // remark: creator: Gerhard Mayer <mayerg97 <-at-> rub.de>
63 // remark: publisher: HUPO Proteomics Standards Initiative Mass Spectrometry Standards Working Group and HUPO Proteomics Standards Initiative Proteomics Informatics Working Group
64 // remark: When appropriate the definition and synonyms of a term are reported exactly as in the chapter 12 of IUPAC orange book. See http://www.iupac.org/projects/2003/2003-056-2-500.html and http://mass-spec.lsu.edu/msterms/index.php/Main_Page
65 // remark: For any queries contact psidev-ms-vocab@lists.sourceforge.net
66 // remark: URL: https://raw.githubusercontent.com/HUPO-PSI/psi-ms-CV/master/psi-ms.obo
67 // remark: This work is licensed under the Creative Commons Attribution 3.0 Unported License.
68 // remark: To view a copy of this license, visit http://creativecommons.org/licenses/by/3.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA.
69 // ontology: ms
70 //
71 // [unimod.obo]
72 #define _UNIMOD_OBO_
73 // format-version: 1.2
74 // date: 2016:07:01 11:23
75 //
76 // [unit.obo]
77 #define _UNIT_OBO_
78 // format-version: 1.2
79 // date: 12:10:2011 11:21
80 // saved-by: George Gkoutos
81 // auto-generated-by: OBO-Edit 2.1-beta13
82 // subsetdef: unit_group_slim "unit group slim"
83 // subsetdef: unit_slim "unit slim"
84 // default-namespace: unit.ontology
85 // namespace-id-rule: * UO:$sequence(7,0,9999999)$
86 // import: http://purl.obolibrary.org/obo/pato.obo
87 //
88 
89 
90 namespace pwiz {
91 namespace cv {
92 
93 
94 /// enumeration of controlled vocabulary (CV) terms, generated from OBO file(s)
95 enum PWIZ_API_DECL CVID
96 {
98 
99  /// Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass Spectrometry Vocabularies.
101 
102  /// sample number: A reference number relevant to the sample under study.
103  MS_sample_number = 1000001,
104 
105  /// sample name: A reference string relevant to the sample under study.
106  MS_sample_name = 1000002,
107 
108  /// sample state: The chemical phase of a pure sample, or the state of a mixed sample.
109  MS_sample_state = 1000003,
110 
111  /// sample mass: Total mass of sample used.
112  MS_sample_mass = 1000004,
113 
114  /// sample volume: Total volume of solution used.
115  MS_sample_volume = 1000005,
116 
117  /// sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used.
119 
120  /// inlet type: The nature of the sample inlet.
121  MS_inlet_type = 1000007,
122 
123  /// ionization type: The method by which gas phase ions are generated from the sample.
125 
126  /// ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer.
128 
129  /// analyzer type: The common name of the particular analyzer stage being described. Synonym of mass analyzer, should be obsoleted.
131 
132  /// mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley between them is a specified fraction of the peak height.
134 
135  /// resolution measurement method: Which of the available standard measures is used to define whether two peaks are separate.
137 
138  /// resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either constant with respect to m/z or proportional to m/z.
140 
141  /// accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
142  MS_accuracy = 1000014,
143 
144  /// scan rate: Rate in Th/sec for scanning analyzers.
145  MS_scan_rate = 1000015,
146 
147  /// scan start time: The time that an analyzer started a scan, relative to the start of the MS run.
149 
150  /// Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical acquisition over a range of masses (Mass Scan), and Selected Ion Detection. The primary difference is that Selected Ion Detection produces a single value for the signal at the selected mass rather than producing a mass spectrum.
152 
153  /// scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high, or high to low).
154  MS_scan_direction = 1000018,
155 
156  /// scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
157  MS_scan_law = 1000019,
158 
159  /// scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experiment.
161 
162  /// reflectron state: Status of the reflectron, turned on or off.
164 
165  /// TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer.
167 
168  /// isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selected precursor ion.
170 
171  /// final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
173 
174  /// magnetic field strength: A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
176 
177  /// B (magnetic field strength): A property of space that produces a force on a charged particle equal to qv x B where q is the particle charge and v its velocity.
179 
180  /// detector type: Type of detector used in the mass spectrometer.
181  MS_detector_type = 1000026,
182 
183  /// detector acquisition mode: Method by which detector signal is acquired by the data system.
185 
186  /// detector resolution: The resolving power of the detector to detect the smallest difference between two ions so that the valley between them is a specified fraction of the peak height.
188 
189  /// sampling frequency: The rate of signal sampling (measurement) with respect to time.
191 
192  /// vendor: Name of instrument vendor.
194 
195  /// instrument model: Instrument model name not including the vendor's name.
197 
198  /// customization: Free text description of a single customization made to the instrument; for several modifications, use several entries.
199  MS_customization = 1000032,
200 
201  /// deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is commonly done to reduce complexity. It is done in conjunction with the charge state deconvolution.
202  MS_deisotoping = 1000033,
203 
204  /// charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that represent multiple-charge ions.
206 
207  /// peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data.
208  MS_peak_picking = 1000035,
209 
210  /// scan mode: OBSOLETE.
212 
213  /// polarity: Terms to describe the polarity setting of the instrument.
215 
216  /// minute: Acquisition time in minutes.
218 
219  /// second: Acquisition time in seconds.
221 
222  /// m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
223  MS_m_z = 1000040,
224 
225  /// mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
227 
228  /// Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
230 
231  /// thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion in unified atomic mass units by its charge number (regardless of sign). The symbol is written in italicized lower case letters with no spaces. Note 1: The term mass-to-charge-ratio is deprecated. Mass-to-charge ratio has been used for the abscissa of a mass spectrum, although the quantity measured is not the quotient of the ion's mass to its electric charge. The three-character symbol m/z is recommended for the quantity that is the independent variable in a mass spectrum Note 2: The proposed unit thomson (Th) is deprecated.
233 
234  /// charge state: The charge state of the ion, single or multiple and positive or negatively charged.
235  MS_charge_state = 1000041,
236 
237  /// z (charge state): The charge state of the ion, single or multiple and positive or negatively charged.
239 
240  /// peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum.
241  MS_peak_intensity = 1000042,
242 
243  /// intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when using counting detectors, but measured in volts when using analog detectors.
244  MS_intensity_unit = 1000043,
245 
246  /// dissociation method: Fragmentation method used for dissociation or fragmentation.
248 
249  /// collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting in dissociation of the ion.
251 
252  /// energy unit: Energy units are represented in either eV or Joules.
254 
255  /// emulsion: State if the sample is in emulsion form.
256  MS_emulsion = 1000047,
257 
258  /// gaseous sample state: State if the sample is in gaseous form.
260 
261  /// liquid sample state: State if the sample is in liquid form.
263 
264  /// solid sample state: State if the sample is in solid form.
266 
267  /// solution: State if the sample is in solution form.
268  MS_solution = 1000051,
269 
270  /// suspension: State if the sample is in suspension form.
271  MS_suspension = 1000052,
272 
273  /// sample batch: Sample batch lot identifier.
274  MS_sample_batch = 1000053,
275 
276  /// chromatography: Chromatographic conditions used to obtain the sample.
278 
279  /// continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
281 
282  /// CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte in solution is entrained in a flowing liquid matrix.
284 
285  /// direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable probe.
286  MS_direct_inlet = 1000056,
287 
288  /// electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization source.
290 
291  /// flow injection analysis: Sample is directly injected or infused into the ionization source.
293 
294  /// inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied by electromagnetic induction.
296 
297  /// infusion: The continuous flow of solution of a sample into the ionization source.
298  MS_infusion = 1000060,
299 
300  /// jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of diffusivity.
301  MS_jet_separator = 1000061,
302 
303  /// membrane separator: A device to separate carrier molecules from analyte molecules on the basis of ease of diffusion across a semipermeable membrane.
305 
306  /// moving belt: Continuous moving surface in the form of a belt which passes through an ion source carrying analyte molecules.
307  MS_moving_belt = 1000063,
308 
309  /// moving wire: Continuous moving surface in the form of a wire which passes through an ion source carrying analyte molecules.
310  MS_moving_wire = 1000064,
311 
312  /// open split: A division of flowing stream of liquid into two streams.
313  MS_open_split = 1000065,
314 
315  /// particle beam: Method for generating ions from a solution of an analyte.
316  MS_particle_beam = 1000066,
317 
318  /// reservoir: A sample inlet method involving a reservoir.
319  MS_reservoir = 1000067,
320 
321  /// septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
322  MS_septum = 1000068,
323 
324  /// thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heating of the sample.
326 
327  /// atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
329 
330  /// APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric pressure as opposed to the reduced pressure is normally used for chemical ionization.
332 
333  /// chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
335 
336  /// CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion. The process may involve transfer of an electron, a proton or other charged species between the reactants. When a positive ion results from chemical ionization the term may be used without qualification. When a negative ion results the term negative ion chemical ionization should be used. Note that this term is not synonymous with chemi-ionization.
338 
339  /// Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
341 
342  /// EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
344 
345  /// electrospray ionization: A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
347 
348  /// ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from an analyte-containing solution via highly charged fine droplets, by means of spraying the solution from a narrow-bore needle tip at atmospheric pressure in the presence of a high electric field. When a pressurized gas is used to aid in the formation of a stable spray, the term pneumatically assisted electrospray ionization is used. The term ion spray is not recommended.
350 
351  /// fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
353 
354  /// FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused beam of neutral atoms having a translational energy of several thousand eV with a sample that is typically dissolved in a solvent matrix. See also secondary ionization.
356 
357  /// matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
359 
360  /// MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules that are present in a solid or solvent matrix that is irradiated with a pulsed laser. See also laser desorption/ionization.
362 
363  /// negative ion mode: OBSOLETE.
365 
366  /// positive ion mode: OBSOLETE.
368 
369  /// axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the axis of the analyzer.
371 
372  /// fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
374 
375  /// FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on the principle of ion cyclotron resonance in which an ion in a magnetic field moves in a circular orbit at a frequency characteristic of its m/z value. Ions are coherently excited to a larger radius orbit using a pulse of radio frequency energy and their image charge is detected on receiver plates as a time domain signal. Fourier transformation of the time domain signal results in a frequency domain signal which is converted to a mass spectrum based in the inverse relationship between frequency and m/z.
377 
378  /// magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam that deflects the beam to an extent that is proportional to the particle momentum per unit charge. For a monoenergetic beam, the deflection is proportional to m/z.
380 
381  /// quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
382  MS_quadrupole = 1000081,
383 
384  /// quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
386 
387  /// Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
389 
390  /// QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
392 
393  /// Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion trap and then selectively ejects them by varying the RF and DC potentials.
395 
396  /// radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the radius of the analyzer.
398 
399  /// time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
400  MS_time_of_flight = 1000084,
401 
402  /// TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration to a fixed acceleration energy.
404 
405  /// baseline: An attribute of resolution when recording the detector response in absence of the analyte.
406  MS_baseline = 1000085,
407 
408  /// full width at half-maximum: A measure of resolution represented as width of the peak at half peak height.
410 
411  /// FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half peak height.
413 
414  /// ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the signal height.
416 
417  /// constant: When resolution is constant with respect to m/z.
419 
420  /// proportional: When resolution is proportional with respect to m/z.
422 
423  /// mass scan: A variation of instrument where a selected mass is scanned.
425 
426  /// selected ion detection: Please see Single Ion Monitoring.
428 
429  /// decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers.
431 
432  /// increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers.
434 
435  /// exponential: The mass scan is done in exponential mode.
436  MS_exponential = 1000094,
437 
438  /// linear: The mass scan is done in linear mode.
440 
441  /// quadratic: The mass scan is done in quadratic mode.
442  MS_quadratic = 1000096,
443 
444  /// constant neutral mass loss: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
446 
447  /// multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values. Remap to MS:1000205 -Selected Ion Monitoring.
449 
450  /// multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
452 
453  /// MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring.
455 
456  /// precursor ion scan: The specific scan function or process that will record a precursor ion spectrum.
458 
459  /// product ion scan: The specific scan function or process that records product ion spectrum.
461 
462  /// single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scanning entire mass spectrum.
464 
465  /// single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
467 
468  /// None ??: None.
470 
471  /// reflectron off: Reflectron is off.
472  MS_reflectron_off = 1000105,
473 
474  /// reflectron on: Reflectron is on.
475  MS_reflectron_on = 1000106,
476 
477  /// channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
478  MS_channeltron = 1000107,
479 
480  /// Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
482 
483  /// conversion dynode electron multiplier: A surface that is held at high potential so that ions striking the surface produce electrons that are subsequently detected.
485 
486  /// conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce electrons that in turn generate photons through a phosphorescent screen that are detected by a photomultiplier.
488 
489  /// daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
490  MS_daly_detector = 1000110,
491 
492  /// Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
494 
495  /// electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
497 
498  /// EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons.
500 
501  /// faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically connected to a current measuring device.
502  MS_faraday_cup = 1000112,
503 
504  /// focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
506 
507  /// microchannel plate detector: A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
509 
510  /// multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array of channels that each act as a continuous dynode particle multiplier. A charged particle, fast neutral particle, or photon striking the plate causes a cascade of secondary electrons that ultimately exits the opposite side of the plate.
512 
513  /// multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers.
515 
516  /// photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
518 
519  /// PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are then amplified and detected.
521 
522  /// analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
524 
525  /// ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electronic integrated circuit (i/c) that converts continuous signals to discrete digital numbers.
527 
528  /// pulse counting: Definition to do.
529  MS_pulse_counting = 1000118,
530 
531  /// time-digital converter: A device for converting a signal of sporadic pluses into a digital representation of their time indices.
533 
534  /// TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital representation of their time indices.
536 
537  /// transient recorder: A detector acquisition mode used for detecting transient signals.
539 
540  /// SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems and MDS Analytical Technologies (formerly MDS SCIEX). Previously branded as \"Applied Biosystems|MDS SCIEX\".
542 
543  /// Bruker Daltonics instrument model: Bruker Daltonics' instrument model.
545 
546  /// IonSpec instrument model: IonSpec corporation instrument model.
548 
549  /// Shimadzu instrument model: Shimadzu corporation instrument model.
551 
552  /// Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model.
554 
555  /// Waters instrument model: Waters Corporation instrument model.
557 
558  /// centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
560 
561  /// Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contains discrete peaks of zero width. Often used to reduce the size of dataset.
563 
564  /// profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
566 
567  /// continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
569 
570  /// Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded with ion current (counts per second) on one axis and mass/charge ratio on another axis.
572 
573  /// negative scan: Polarity of the scan is negative.
574  MS_negative_scan = 1000129,
575 
576  /// positive scan: Polarity of the scan is positive.
577  MS_positive_scan = 1000130,
578 
579  /// number of detector counts: The number of counted events observed in one or a group of elements of a detector.
581 
582  /// percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percentage of the magnitude of the base peak intensity.
584 
585  /// collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
587 
588  /// CID (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
590 
591  /// CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
593 
594  /// collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
596 
597  /// plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
599 
600  /// PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
602 
603  /// post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
605 
606  /// PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where product ions of metastable transitions or collision-induced dissociations generated in the drift tube prior to entering the reflectron are m/z separated to yield product ion spectra.
608 
609  /// surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface.
611 
612  /// SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a surface.
614 
615  /// electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
617 
618  /// eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle containing one unit of charge through a potential difference of one volt. An electron-volt is equal to 1.602 176 53(14) x 10^-19 J.
620 
621  /// normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional energies of ions in an effort to provide equivalent excitation of all ions.
623 
624  /// 4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
625  MS_4000_QTRAP = 1000139,
626 
627  /// 4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
629 
630  /// apex IV: Bruker Daltonics' apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
631  MS_apex_IV = 1000141,
632 
633  /// apex Q: Bruker Daltonics' apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
634  MS_apex_Q = 1000142,
635 
636  /// API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
637  MS_API_150EX = 1000143,
638 
639  /// API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
640  MS_API_150EX_Prep = 1000144,
641 
642  /// API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
643  MS_API_2000 = 1000145,
644 
645  /// API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
646  MS_API_3000 = 1000146,
647 
648  /// API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
649  MS_API_4000 = 1000147,
650 
651  /// autoflex II: Bruker Daltonics' autoflex II: MALDI TOF.
652  MS_autoflex_II = 1000148,
653 
654  /// autoflex TOF/TOF: Bruker Daltonics' autoflex TOF/TOF MS: MALDI TOF.
656 
657  /// Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
659 
660  /// BioTOF II: Bruker Daltonics' BioTOF II: ESI TOF.
661  MS_BioTOF_II = 1000151,
662 
663  /// BioTOF-Q: Bruker Daltonics' BioTOF-Q: ESI Q-TOF.
664  MS_BioTOF_Q = 1000152,
665 
666  /// DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
668 
669  /// DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
670  MS_DELTAplusXP = 1000154,
671 
672  /// ELEMENT2: ThermoFinnigan ELEMENT2 MS.
674 
675  /// esquire 4000: Bruker Daltonics' esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
676  MS_esquire_4000 = 1000156,
677 
678  /// esquire 6000: Bruker Daltonics' esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
679  MS_esquire_6000 = 1000157,
680 
681  /// explorer: IonSpec Explorer MS.
682  MS_explorer = 1000158,
683 
684  /// GCT: Waters oa-ToF based GCT.
685  MS_GCT = 1000159,
686 
687  /// HCT: Bruker Daltonics' HCT: ESI Q-TOF, Nanospray, APCI, APPI.
688  MS_HCT = 1000160,
689 
690  /// HCTplus: Bruker Daltonics' HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
691  MS_HCTplus = 1000161,
692 
693  /// HiRes ESI: IonSpec HiResESI MS.
694  MS_HiRes_ESI = 1000162,
695 
696  /// HiRes MALDI: IonSpec HiResMALDI MS.
697  MS_HiRes_MALDI = 1000163,
698 
699  /// IsoPrime: Waters IsoPrime MS.
700  MS_IsoPrime = 1000164,
701 
702  /// IsoProbe: Waters IsoProbe MS.
703  MS_IsoProbe = 1000165,
704 
705  /// IsoProbe T: Waters IsoProbe T MS.
706  MS_IsoProbe_T = 1000166,
707 
708  /// LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
709  MS_LCQ_Advantage = 1000167,
710 
711  /// LCQ Classic: ThermoFinnigan LCQ Classic MS.
712  MS_LCQ_Classic = 1000168,
713 
714  /// LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
716 
717  /// M@LDI L: Waters oa-ToF based MALDI L.
718  MS_M_LDI_L = 1000170,
719 
720  /// M@LDI LR: Waters oa-ToF based MALDI LR.
721  MS_M_LDI_LR = 1000171,
722 
723  /// MAT253: ThermoFinnigan MAT253 MS.
724  MS_MAT253 = 1000172,
725 
726  /// MAT900XP: ThermoFinnigan MAT900XP MS.
727  MS_MAT900XP = 1000173,
728 
729  /// MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
730  MS_MAT900XP_Trap = 1000174,
731 
732  /// MAT95XP: ThermoFinnigan MAT95XP MS.
733  MS_MAT95XP = 1000175,
734 
735  /// MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
736  MS_MAT95XP_Trap = 1000176,
737 
738  /// microflex: Bruker Daltonics' microflex: MALDI TOF.
739  MS_microflex = 1000177,
740 
741  /// microTOF LC: Bruker Daltonics' microTOF LC: ESI TOF, Nanospray, APCI, APPI.
742  MS_microTOF_LC = 1000178,
743 
744  /// neptune: ThermoFinnigan NEPTUNE MS.
745  MS_neptune = 1000179,
746 
747  /// NG-5400: Waters NG-5400 MS.
748  MS_NG_5400 = 1000180,
749 
750  /// OMEGA: IonSpec OMEGA MS.
751  MS_OMEGA = 1000181,
752 
753  /// OMEGA-2001: IonSpec OMEGA-2001 MS.
754  MS_OMEGA_2001 = 1000182,
755 
756  /// OmniFlex: Bruker Daltonics' OmniFlex: MALDI TOF.
757  MS_OmniFlex = 1000183,
758 
759  /// Platform ICP: Waters Platform ICP MS.
760  MS_Platform_ICP = 1000184,
761 
762  /// PolarisQ: ThermoFinnigan PolarisQ MS.
763  MS_PolarisQ = 1000185,
764 
765  /// proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
767 
768  /// Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
769  MS_Q_TRAP = 1000187,
770 
771  /// Q-Tof micro: Waters oa-ToF based Q-Tof micro.
772  MS_Q_Tof_micro = 1000188,
773 
774  /// Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima.
775  MS_Q_Tof_ultima = 1000189,
776 
777  /// QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
778  MS_QSTAR = 1000190,
779 
780  /// quattro micro: Waters oa-ToF based micro.
781  MS_quattro_micro = 1000191,
782 
783  /// Quattro UItima: Waters oa-ToF based Ultima.
784  MS_Quattro_UItima = 1000192,
785 
786  /// Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
787  MS_Surveyor_MSQ = 1000193,
788 
789  /// SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
790  MS_SymBiot_I = 1000194,
791 
792  /// SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
793  MS_SymBiot_XVI = 1000195,
794 
795  /// TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
796  MS_TEMPUS_TOF = 1000196,
797 
798  /// TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
799  MS_TRACE_DSQ = 1000197,
800 
801  /// TRITON: ThermoFinnigan TRITON MS.
802  MS_TRITON = 1000198,
803 
804  /// TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
805  MS_TSQ_Quantum = 1000199,
806 
807  /// ultima: IonSpec Ultima MS.
808  MS_ultima = 1000200,
809 
810  /// ultraflex: Bruker Daltonics' ultraflex: MALDI TOF.
811  MS_ultraflex = 1000201,
812 
813  /// ultraflex TOF/TOF: Bruker Daltonics' ultraflex TOF/TOF: MALDI TOF.
815 
816  /// Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
817  MS_Voyager_DE_PRO = 1000203,
818 
819  /// Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
820  MS_Voyager_DE_STR = 1000204,
821 
822  /// selected ion monitoring: The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
824 
825  /// Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
827 
828  /// SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of several specific m/z values are recorded rather than the entire mass spectrum.
830 
831  /// selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
833 
834  /// SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z selected precursor ions recorded via multiple stages of mass spectrometry. Selected reaction monitoring can be performed in time or in space.
836 
837  /// accurate mass: An experimentally determined mass that is can be to determine a unique elemental formula. For ions less than 200 u, a measurement with 5 ppm accuracy is sufficient to determine the elemental composition.
839 
840  /// average mass: The mass of an ion or molecule calculated using the average mass of each element weighted for its natural isotopic abundance.
842 
843  /// appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
845 
846  /// AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a specified ion. The term appearance potential is not recommended.
848 
849  /// base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
850  MS_base_peak = 1000210,
851 
852  /// BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied to the spectra of pure substances or mixtures.
854 
855  /// OBSOLETE charge number: The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
857 
858  /// z (OBSOLETE charge number): The total charge on an ion divided by the electron charge e. OBSOLETED 2009-10-27 since this was viewed as a duplication of 00041 charge state.
860 
861  /// dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
863 
864  /// Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1.660 538 86(28) x 10^-27 kg.
866 
867  /// electron affinity: The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
869 
870  /// EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ? M + e where M- and M are in their ground rotational, vibrational and electronic states and the electron has zero kinetic energy.
872 
873  /// electron energy obsolete: The potential difference through which electrons are accelerated before they are used to bring about electron ionization.
875 
876  /// exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom.
878 
879  /// field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields.
881 
882  /// FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic fields.
884 
885  /// ionization cross section: A measure of the probability that a given ionization process will occur when an atom or molecule interacts with a photon, electron, atom or molecule.
887 
888  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
890 
891  /// ionization energy: The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
893 
894  /// IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to produce a positive ion.
896 
897  /// isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
899 
900  /// IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an isotopically enriched compound is used as an internal standard.
902 
903  /// magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to qvxB where q is the particle charge, v its velocity and B the magnetic field. Magnetic deflection of an ion beam is used for m/z separation in a magnetic sector mass spectrometer.
905 
906  /// mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom.
908 
909  /// mass number: The sum of the protons and neutrons in an atom, molecule or ion.
911 
912  /// molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules).
914 
915  /// monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element.
917 
918  /// molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
920 
921  /// MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introduced into the mass spectrometer as a molecular beam.
923 
924  /// multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are absorbed.
926 
927  /// MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons are absorbed.
929 
930  /// nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nominal mass if it contains an odd number of nitrogen atoms.
932 
933  /// nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope of each element rounded to the nearest integer value.
935 
936  /// odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions, whereas even-electron ions generally form even-electron fragment ions.
938 
939  /// peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often associated with particular ions, the terms peak and ion should not be used interchangeably.
940  MS_peak = 1000231,
941 
942  /// peak intensity: The height or area of a peak in a mass spectrum.
944 
945  /// proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
947 
948  /// PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy change for the reaction M + H+ ->[M+H]+, where all species are in their ground rotational, vibrational and electronic states.
950 
951  /// mass resolving power: In a mass spectrum, the observed mass divided by the difference between two masses that can be separated. The method by which delta m was obtained and the mass at which the measurement was made should be reported.
953 
954  /// total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
956 
957  /// TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion current detected in each of a series of mass spectra recorded as a function of retention time.
959 
960  /// transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number entering that region.
961  MS_transmission = 1000236,
962 
963  /// unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
965 
966  /// u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground state and equal to 1.660 538 86(28) x 10^-27 kg.
968 
969  /// accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
971 
972  /// AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sample are ionized, accelerated to MeV energies and separated according to their momentum, charge and energy.
974 
975  /// atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
977 
978  /// AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser desorption ionization in which the sample target is at atmospheric pressure and the ions formed by the pulsed laser are sampled through a small aperture into the mass spectrometer.
980 
981  /// atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
983 
984  /// API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas phase at atmospheric pressure.
986 
987  /// Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
989 
990  /// APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
992 
993  /// blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
995 
996  /// BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation wherein excitation of the reactant ion is caused by absorption of infrared photons radiating from heated blackbody surroundings, which are usually the walls of a vacuum chamber. See also infrared multiphoton dissociation.
998 
999  /// charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1001 
1002  /// CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond is not adjacent to the apparent charge site.
1004 
1005  /// consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1007 
1008  /// CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1010 
1011  /// charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1013 
1014  /// CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the removal of one or more electrons from the ion.
1016 
1017  /// delayed extraction: The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1019 
1020  /// DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in desorption ionization from a surface. The extraction delay can produce energy focusing in a time-of-flight mass spectrometer.
1022 
1023  /// desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1025 
1026  /// DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vaporization of that sample.
1028 
1029  /// direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1031 
1032  /// DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrometer ion source for desorption ionization.
1034 
1035  /// direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1037 
1038  /// DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray or desorption ionization.
1040 
1041  /// electron capture dissociation: A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1043 
1044  /// ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts with a low energy electrons. Capture of the electron leads the liberation of energy and a reduction in charge state of the ion with the production of the (M + nH) (n-1)+ odd electron ion, which readily fragments.
1046 
1047  /// even-electron ion: An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1049 
1050  /// EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state, e.g. CH3+ in its ground state.
1052 
1053  /// electron-induced excitation in organics: The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1055 
1056  /// EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the translational energy of the collision is converted into internal energy of the ion.
1058 
1059  /// electron multiplier: A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1061 
1062  /// EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or photons by incidence upon the surface of an electrode to produce secondary electrons. The secondary electrons are then accelerated to other electrodes or parts of a continuous electrode to produce further secondary electrons.
1064 
1065  /// electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1067 
1068  /// ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
1070 
1071  /// flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1073 
1074  /// FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that carries the ions through a meter-long reactor at pressures around 100 Pa.
1076 
1077  /// high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1079 
1080  /// FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two concentric cylindrical electrodes due to application of a high voltage asymmetric waveform whereby ions migrate towards one of the two electrodes depending on the ratio of the high- to low-field mobility of the ion.
1082 
1083  /// field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1085 
1086  /// FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface in the presence of a high electric field. Because this process may encompass ionization by field ionization or other mechanisms, it is not recommended as a synonym for field desorption ionization.
1088 
1089  /// field ionization: The removal of electrons from any species by interaction with a high electric field.
1091 
1092  /// FI (field ionization): The removal of electrons from any species by interaction with a high electric field.
1094 
1095  /// glow discharge ionization: The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1097 
1098  /// GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at the cathode by application of a voltage to a low pressure gas.
1100 
1101  /// ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1103 
1104  /// IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated according to the ratio of its translational energy to charge.
1106 
1107  /// ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1109 
1110  /// IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer gas under the influence of an electric field.
1112 
1113  /// infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1115 
1116  /// IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates as a result of the absorption of multiple infrared photons.
1118 
1119  /// isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1121 
1122  /// IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different isotopes of an element in a material with a mass spectrometer.
1124 
1125  /// ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combination.
1126  MS_ion_trap = 1000264,
1127 
1128  /// IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in combination.
1130 
1131  /// kinetic energy release distribution: Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1133 
1134  /// KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy release for an ensemble of metastable ions undergoing a specific dissociation reaction.
1136 
1137  /// Laser Desorption: The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1139 
1140  /// Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1142 
1143  /// LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or with gas-phase ions or molecules.
1145 
1146  /// mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1148 
1149  /// MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector in reverse geometry. The accelerating voltage, V, and the magnetic sector field, B, are set at fixed values to select the precursor ions, which are then allowed to dissociate or to react in a field free region between the two sectors. The kinetic energy product ions of m/z selected precursor ions is analyzed by scanning the electric sector field, E. The width of the product ion spectrum peaks is related to the kinetic energy release distribution (KERD) for the dissociation process.
1151 
1152  /// mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1154 
1155  /// MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and the results obtained with these instruments.
1157 
1158  /// mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1160 
1161  /// MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically charged products or precursors of a m/z selected ion or ions.
1163 
1164  /// multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1166 
1167  /// MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by product ion detection for successive progeny ions.
1169 
1170  /// Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions.
1172 
1173  /// NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negative ions.
1175 
1176  /// neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1178 
1179  /// NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neutrals by charge transfer to a collision gas or by dissociation. The neutrals are separated from the remaining ions and ionized in collisions with a second gas. This method is used to investigate reaction intermediates and other unstable species.
1181 
1182  /// photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1184 
1185  /// PI (photoionization): The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
1187 
1188  /// pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1190 
1191  /// PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to the point of decomposition and the gaseous decomposition products are introduced into the ion source.
1193 
1194  /// collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1196 
1197  /// q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so as to focus a beam of ions through a collision gas with no m/z separation.
1199 
1200  /// resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1202 
1203  /// REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cross section is significantly enhanced because the energy of the incident photons is resonant with an intermediate excited state of the neutral species.
1205 
1206  /// residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1208 
1209  /// RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gasses in an evacuated chamber.
1211 
1212  /// surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1214 
1215  /// SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas phase from analytes deposited on a particular surface substrate which is irradiated with a laser beam of which wavelength is absorbed by the surface. See also desorption/ionization on silicon and laser desorption/ionization.
1217 
1218  /// surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1220 
1221  /// SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the matrix is covalently linked to the target surface.
1223 
1224  /// suface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1226 
1227  /// SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1229 
1230  /// selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1232 
1233  /// SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier gas and undergo ion-molecule reactions.
1235 
1236  /// sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1238 
1239  /// SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry to carry out ion/neutral reactions such as low-energy collision-induced dissociation. A radio-frequency electric field of slightly off-resonance to the cyclotron frequency of the reactant ion cyclically accelerates and decelerates the reactant ion that is confined in the Penning ion trap. The ion's orbit does not exceed the dimensions of ion trap while the ion undergoes an ion/neutral species process that produces a high average translational energy for an extended time.
1241 
1242  /// Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
1244 
1245  /// SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
1247 
1248  /// stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1250 
1251  /// SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ions in FT-ICR mass spectrometer or Paul ion trap. An excitation waveform in the time-domain is generated by taking the inverse Fourier transform of an appropriate frequency-domain programmed excitation spectrum, in which the resonance frequencies of ions to be excited are included. This technique may be used for selection of precursor ions in MS2 experiments.
1253 
1254  /// total ion current: The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1256 
1257  /// TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/z contributing to a complete mass spectrum or in a specified m/z range of a mass spectrum.
1259 
1260  /// time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1262 
1263  /// TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished by introducing a time delay between the formation of the ions and the application of the accelerating voltage pulse.
1265 
1266  /// time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1268 
1269  /// TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free region after acceleration to a fixed kinetic energy.
1271 
1272  /// cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged particles.
1273  MS_cyclotron = 1000288,
1274 
1275  /// double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing and an electric sector for energy focusing of an ion beam.
1277 
1278  /// hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perform tandem mass spectrometry.
1280 
1281  /// linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by means of an electric field at the ends of the trap.
1283 
1284  /// mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-charge ratio in which the ions are directed onto a focal plane detector such as a photographic plate.
1286 
1287  /// mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of ions.
1289 
1290  /// mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function of the mass-to-charge ratio (m/z).
1291  MS_mass_spectrum = 1000294,
1292 
1293  /// mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/(4 ?(2)) radians in a radial electric field is followed by a magnetic deflection of ?/2 radians.
1295 
1296  /// nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection of ?/2 radians in a radial electric field analyzer is followed by a magnetic deflection of ?/3 radians.
1298 
1299  /// paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage. The ejection of ions with a m/z less than a prescribed value and retention of those with higher mass depends on the application of radio frequency voltages between a ring electrode and two end-cap electrodes to confine the ions in a circular path. The choice of these voltages determines the m/z below which ions are ejected.
1301 
1302  /// prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are separated by means of crossed electric and magnetic fields in such a way that the selected ions follow a prolate trochoidal path.
1304 
1305  /// quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap. If so then add a synonym to paul and obsolete this term.
1307 
1308  /// reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direction of travel of the ions entering it. A reflectron improves mass resolution by assuring that ions of the same m/z but different kinetic energy arrive at the detector at the same time.
1309  MS_reflectron = 1000300,
1310 
1311  /// sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z selection in a beam of ions. Such instruments may also have one or more electric sectors for energy selection.
1313 
1314  /// tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry.
1316 
1317  /// transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods whose centers form the corners of a square and whose opposing poles are connected. The voltage applied to the rods is a superposition of a static potential and a sinusoidal radio frequency potential. The motion of an ion in the x and y dimensions is described by the Matthieu equation whose solutions show that ions in a particular m/z range can be transmitted along the z axis.
1319 
1320  /// accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
1322 
1323  /// cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field B that results from the force qvB.
1325 
1326  /// dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fields that vary with time.
1328 
1329  /// einzel lens: Three element charged particle lens in which the first and third elements are held at the same voltage. Such a lens produces focusing without changing the translational energy of the particle.
1330  MS_einzel_lens = 1000307,
1331 
1332  /// electric field strength: The magnitude of the force per unit charge at a given point in space.
1334 
1335  /// first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
1337 
1338  /// fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
1340 
1341  /// kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retarding field, time-of-flight, or the extent of deflection in an electric or magnetic field.
1343 
1344  /// mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
1346 
1347  /// scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions.
1349 
1350  /// mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z values from an ion trap.
1352 
1353  /// mass selective instability: A method for selective ejection of ions according to their m/z value in an ion trap.
1355 
1356  /// mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that describes charged particle motion in a quadrupole mass filter or quadrupole ion trap mass spectrometer.
1358 
1359  /// orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel into a time-of-flight mass spectrometer. Ions may be extracted from a directional ion source, drift tube or m/z separation stage.
1361 
1362  /// resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary radio frequency voltage that is applied to the end-cap electrodes. The voltage is tuned to the secular frequency of a particular ion to eject it.
1364 
1365  /// space charge effect: The mutual repulsion of particles of like charge that limits the current in a charged-particle beam and causes beams or packets of charged particles to expand radially over time.
1367 
1368  /// static field: An electric or magnetic field that does not change in time.
1369  MS_static_field = 1000320,
1370 
1371  /// 2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value required to transmit the main ion-beam thereby allowing ions with a kinetic energy-to-charge ratio twice that of the main ion-beam to be transmitted. Product ions resulting from partial charge transfer reactions such as m^2+ + N ? m^+ + N^+ that occur in a collision cell (containing a gas, N) located in a field-free region preceding a magnetic and electric sector combination are detected. When the magnetic sector field B is scanned, a mass spectrum of singly charged product ions of doubly charged precursor ions is obtained.
1373 
1374  /// charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a charge inversion reaction as a function of m/z.
1376 
1377  /// constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement.
1379 
1380  /// constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment.
1382 
1383  /// Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that undergo a selected m/z increment.
1385 
1386  /// constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1388 
1389  /// constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all product ions that have been produced by gain of a pre-selected neutral mass following the reaction with and addition of the gas in a collision cell.
1391 
1392  /// constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1394 
1395  /// constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all product ions that have been produced with a selected m/z decrement from any precursor ions. The spectrum shown correlates to the precursor ion spectrum. See also neutral loss spectrum.
1397 
1398  /// consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
1400 
1401  /// e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric sector field E is set to half the value required to transmit the main ion-beam. This spectrum records the signal from doubly charged product ions of charge-stripping reactions.
1403 
1404  /// linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer that incorporates at least one magnetic sector and one electric sector. Two or more of the analyzers are scanned simultaneously so as to preserve a predetermined relationship between scan parameters to produce a product ion, precursor ion or constant neutral loss spectrum.
1406 
1407  /// linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrometer that incorporates at least one magnetic sector plus one electric sector. The magnetic field B and the electric field E are scanned simultaneously while the accelerating voltage V is held constant, so as to maintain the ratio of the two fields constant. This linked scan may record a product ion spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors.
1409 
1410  /// Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector. The electric sector field, E, and the accelerating voltage, V, are scanned simultaneously, so as to maintain the ratio E2/V at a constant value. This linked scan recordss a product ion spectrum of dissociation or other reactions occurring in a field free region (FFR) preceding the two sectors.
1412 
1413  /// Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates at least one electric sector plus one magnetic sector in either order. The accelerating voltage is fixed and the magnetic field, B, and the electric field, E, are scanned simultaneously so as to maintain the ratio B2/E at a constant value. This linked scan records a precursor ion spectrum of dissociation or other reactions occurring in the field free region preceding the two sectors. The term B2/E linked scan is not recommended.
1415 
1416  /// Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that incorporates at least one electric sector plus one magnetic sector placed in either order. The accelerating voltage is fixed while scanning the magnetic field, B, and electric field, E, simultaneously, so as to maintain the quantity B[1-(E/E0)]1/2/E at a constant value. This linked scan records a constant neutral mass loss (or gain) spectrum of dissociation or other reactions occurring in a field free region preceding the two sectors. E0 is the electric field required to transmit the singly charged analog of the desired neutral fragment. The term B[1-(E/E0)]1/2/E linked scan.
1418 
1419  /// MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a single m/z analyzer (such as a Paul Ion Trap or FTMS) in discreet steps over time. Ions in a specific m/z range are selected, dissociated, and the product ions analyzed sequentially in time.
1421 
1422  /// MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z analyzers separated in space. Specific m/z separation functions are designed such that in one section of the instrument ions are selected, dissociated in an intermediate region, and the product ions are then transmitted to another analyser for m/z separation and data acquisition.
1424 
1425  /// neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds the molecular formula in Hill notation of the neutral loss molecule, see PMID: 21182243. This term must be used in conjunction with a child of the term MS:1002307 (fragmentation ion type).
1426  MS_neutral_loss = 1000336,
1427 
1428  /// nth generation product ion: Serial product ions from dissociation of selected precursor ions where n refers to the number of stages of dissociation. The term granddaughter ion is deprecated.
1430 
1431  /// nth generation product ion scan: The specific scan functions or processes that record the appropriate generation of product ion or ions of any m/z selected precursor ions.
1433 
1434  /// nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which the appropriate scan function can be set to record the appropriate generation product ion or ions of m/z selected precursor ions.
1436 
1437  /// precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular dissociation, ion/molecule reaction, isomerization, or change in charge state. The term parent ion is deprecated.
1439 
1440  /// precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product m/z.
1442 
1443  /// product ion: An ion formed as the product of a reaction involving a particular precursor ion. The reaction can be unimolecular dissociation to form fragment ions, an ion/molecule reaction, or simply involve a change in the number of charges. The term fragment ion is deprecated. The term daughter ion is deprecated.
1445 
1446  /// product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z separation scan function is set to record the product ion or ions of selected precursor ions.
1448 
1449  /// progeny ion: A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1451 
1452  /// Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that includes product ions, 1st generation product ions, 2nd generation product ions, etc. Given the sequential fragmentation scheme: M1+ -> M2+ -> M3+ -> M4+ -> M5+. M4+ is the precursor ion of M5+, a 1st generation product ion of M3+, a 2nd generation product ion of M2+ and a 3rd generation product ion of M1+.
1454 
1455  /// array detector: Detector comprising several ion collection elements, arranged in a line or grid where each element is an individual detector.
1457 
1458  /// conversion dynode: A surface that is held at high potential such that ions striking the surface produce electrons that are subsequently detected.
1460 
1461  /// dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to amplify the current emitted by the photocathode.
1462  MS_dynode = 1000347,
1463 
1464  /// focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously impinge on the detector plane.
1466 
1467  /// ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that in turn strike a phosphor and the resulting photons are detected by a photomultiplier.
1469 
1470  /// point collector: A detector in which the ion beam is focused onto a point and the individual ions arrive sequentially.
1472 
1473  /// postacceleration detector: A detector in which the charged particles are accelerated to a high velocity and impinge on a conversion dynode, emitting secondary electrons. The electrons are accelerated onto a phosphor screen, which emits photons that are in turn detected using a photomultiplier or other photon detector.
1475 
1476  /// secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a primary beam of atoms, ions or photons. WAS IN DETECTOR TYPE. Where should it go.
1478 
1479  /// adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an ion containing all the constituent atoms of the precursor ion as well as the additional atoms from the associated atoms or molecules.
1481 
1482  /// aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer representing the number of conjugated Pi electrons. Charge delocalization leads to greater stability compared to a hypothetical localized structure.
1484 
1485  /// analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the thioacetyl cation CH3-CS+.
1487 
1488  /// anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
1490 
1491  /// cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
1493 
1494  /// cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with atoms or molecules, such as [(H20)nH]+, [(NaCl)nNa]+ and [(H3PO3)nHPO3]-.
1496 
1497  /// Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin are both formally located in the same atom or group of atoms, as opposed to the spatially separate electronic configuration of distonic ions. The radical cation of methanol, CH3OH+, in which the charge and spin sites are formally located at the O atom is an example of a conventional ion, whereas .CH2-OH2+ is a distonic ion.
1499 
1500  /// diagnostic ion: A product ion whose formation reveals structural or compositional information of its precursor. For instance, the phenyl cation in an electron ionization mass spectrum is a diagnostic ion for benzene and derivatives.
1502 
1503  /// dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral counterpart such as [M2]+ or [M-H-M]+.
1505 
1506  /// distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin cannot be both formally located in the same atom or group of atoms as it can be with a conventional ion. For example, CH2-OH2+ is a distonic ion whereas the radical cation of methanol, CH3OH+ is a conventional ion.
1508 
1509  /// enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is CH3+. Other examples are the oxenium, sulfenium, nitrenium, phosphenium, and halenium ions.
1511 
1512  /// fragment ion: A product ion that results from the dissociation of a precursor ion.
1514 
1515  /// ion?: An atomic or molecular species having a net positive or negative electric charge.
1516  MS_ion__OBSOLETE = 1000365,
1517 
1518  /// Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constituent atoms. For example CH4+ and CH3D+ or 10BF3 and 11BF3. The term isotopologue is a contraction of isotopic homologue.
1520 
1521  /// Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their positions. Isotopomeric ions can be either configurational isomers in which two atomic isotopes exchange positions or isotopic stereoisomers. The term isotopomer is a shortening of isotopic isomer.
1523 
1524  /// metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation but with a lifetime great enough to allow it to exit the ion source and enter the mass spectrometer where it dissociates before detection.
1526 
1527  /// molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the addition off one or more electrons to form a negative ion.
1529 
1530  /// negative ion: An atomic or molecular species having a net negative electric charge.
1532 
1533  /// non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation. Note: Tri-coordinated carbenium ions are termed classical ions.
1535 
1536  /// onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methonium ion CH5+, the hydrogenonium ion H3+ and the hydronium ion H3O+. Other examples are the carbonium, oxonium, sulfonium, nitronium, diazonium, phosphonium, and halonium ions. Onium ions are not limited to monopositive ions; multiply-charged onium ions exist such as the gitonic (proximal) oxonium dication H4O2+ and the distonic oxonium dication H2O+-CH2-CH2-OH2+.
1538 
1539  /// principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of the cluster of isotopologue molecular ions of BBr3. The term principal ion has also been used to describe ions that have been artificially isotopically enriched in one or more positions such as CH3 13CH3+ or CH2D2 +, but those are best defined as isotopologue ions.
1541 
1542  /// positive ion: An atomic or molecular species having a net positive electric charge.
1544 
1545  /// protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented by the symbol [M + H]+, where M is the neutral molecule. The term 'protonated molecular ion,' 'quasi-molecular ion' and 'pseudo-molecular ion' are not recommended.
1547 
1548  /// radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state. The unpaired electron is denoted by a superscript dot alongside the superscript symbol for charge, such as for the molecular ion of a molecule M, that is, M+. Radical ions with more than one charge and/or more than one unpaired electron are denoted such as M(2+)(2). Unless the positions of the unpaired electron and charge can be associated with specific atoms, superscript charge designation should be placed before the superscript dot designation.
1550 
1551  /// reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by direct ionization of a neutral molecule of known structure and are used to verify by comparison the structure of an unknown ion.
1553 
1554  /// stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate prior to detection in a mass spectrometer.
1556 
1557  /// unstable ion: An ion with sufficient energy to dissociate within the ion source.
1559 
1560  /// adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to produce an ion in its lowest energy state.
1562 
1563  /// associative ionization: An ionization process in which two excited atoms or molecules react to form a single positive ion and an electron.
1565 
1566  /// atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ions are generated by photo-ionization.
1568 
1569  /// autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy greater than the detachment threshold loses an electron spontaneously without further interaction with an energy source.
1571 
1572  /// autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy greater than the ionization threshold loses an electron spontaneously without further interaction with an energy source.
1574 
1575  /// charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on the ion is transferred to the neutral without the dissociation of either. Synonymous with charge transfer ionization.
1577 
1578  /// chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an ion. Note that this term is not synonymous with chemical ionization.
1580 
1581  /// desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample deposited on a porous silicon surface.
1583 
1584  /// dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to form products, one of which is an ion.
1586 
1587  /// electron ionization: The ionization of an atom or molecule by electrons that are typically accelerated to energies between 50 and 150 eV. Usually 70 eV electrons are used to produce positive ions. The term 'electron impact' is not recommended.
1589 
1590  /// ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heating and/or collisions with gas molecules.
1592 
1593  /// ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment among the products.
1595 
1596  /// ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
1598 
1599  /// laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser with a solid or liquid material.
1601 
1602  /// liquid secondary ionization: The ionization of any species by the interaction of a focused beam of ions with a sample that is dissolved in a solvent matrix. See also fast atom bombardment and secondary ionization.
1604 
1605  /// membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly to the mass spectrometer ion source.
1607 
1608  /// microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is a result of a mechanical pump. See nanoelectrospray.
1610 
1611  /// nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1613 
1614  /// nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is synonymous with nanospray. The flow is dependent on the potenial on the tip of the electrospray needle and/or a gas presure to push the sample through the needle. See also electrospray ionization and microelectrospray.
1616 
1617  /// penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous species, at least one of which is internally excited.
1619 
1620  /// plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ionic or neutral atoms formed as a result of the fission of a suitable nuclide, typically 252Cf. Synonymous with fission fragment ionization.
1622 
1623  /// pre-ionization state: An electronic state capable of undergoing auto-Ionization.
1625 
1626  /// secondary ionization: The process in which ions are ejected from a sample surface as a result of bombardment by a primary beam of atoms or ions.
1628 
1629  /// soft ionization: The formation of gas-phase ions without extensive fragmentation.
1631 
1632  /// spark ionization: The formation of ions from a solid material by an intermittent electrical discharge.
1634 
1635  /// surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are deposited on a particular surface substrate that is irradiated with a pulsed laser. See also matrix-assisted laser desorption ionization.
1637 
1638  /// surface ionization: The ionization of a neutral species when it interacts with a solid surface with an appropriate work function and temperature.
1640 
1641  /// thermal ionization: The ionization of a neutral species through contact with a high temperature surface.
1643 
1644  /// vertical ionization: A process in which an electron is removed from or added to a molecule without a change in the positions of the atoms. The resulting ion is typically in an excited vibrational state.
1646 
1647  /// association reaction: The reaction of an ion with a neutral species in which the reactants combine to form a single ion.
1649 
1650  /// alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to the atom at the apparent charge site and an atom removed from the aparent charge site by two bonds.
1652 
1653  /// beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the apparent charge site atom by two bonds and an atom adjacent to that atom and removed from the aparent charge site by three bonds.
1655 
1656  /// buffer gas: An inert gas used for collisional deactivation of internally excited ions.
1657  MS_buffer_gas = 1000412,
1658 
1659  /// charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjacent to the apparent charge site. Synonymous with charge mediated fragmentation.
1661 
1662  /// charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the product ion is reversed in sign with respect to the reactant ion.
1664 
1665  /// charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in the magnitude or sign of the charge on the reactant ion.
1667 
1668  /// charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive charge on the product ion is greater than that on the reactant ion.
1670 
1671  /// charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the charge of the reactant ion is transferred to the neutral species.
1673 
1674  /// collisional excitation: The reaction of an ion with a neutral species in which the translational energy of the collision is converted into internal energy of the ion.
1676 
1677  /// collision gas: An inert gas used for collisional excitation. The term target gas is not recommended.
1678  MS_collision_gas = 1000419,
1679 
1680  /// heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single bond that is broken remain on one of the atoms that were originally bonded. This term is synonymous with heterolysis.
1682 
1683  /// high energy collision: Collision-induced dissociation process wherein the projectile ion has laboratory-frame translational energy higher than 1 keV.
1685 
1686  /// beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a beam-type collision cell.
1688 
1689  /// HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs in a beam-type collision cell.
1691 
1692  /// homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons that form a bond between two atoms moving to form a pair with the odd electron on the atom at the apparent charge site. Fragmentation results in the formation of an even electron ion and a radical. This reaction involves the movement of a single electron and is symbolized by a single-barbed arrow. Synonymous with Homolysis.
1694 
1695  /// hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-formed ion in solution prior to introduction into a mass spectrometer, or by reaction of an ion with a deuterated collision gas inside a mass spectrometer.
1697 
1698  /// ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a function their loss of translational energy in reactions with neutral species.
1700 
1701  /// ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are removed from either the ion or neutral.
1703 
1704  /// ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction is not recommended because the hyphen suggests a single species that is that is both an ion and a molecule.
1706 
1707  /// ion/neutral complex: A particular type of transition state that lies between precursor and product ions on the reaction coordinate of some ion reactions.
1709 
1710  /// ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant to produce either chemically different species or changes in the internal energy of one or both of the reactants.
1712 
1713  /// ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the subsequent or simultaneous liberation of a different neutral species as a product.
1715 
1716  /// kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedure in which the relative probabilities of competing ion fragmentations are measured via the relative abundances of the reaction products. The extended kinetic method takes the associated entropy changes into account.
1718 
1719  /// low energy collisions: A collision between an ion and neutral species with translational energy approximately 1000 eV or lower.
1721 
1722  /// low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precursor ion has the translational energy lower than approximately 1000 eV. This process typically requires multiple collisions and the collisional excitation is cumulative.
1724 
1725  /// McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-member transition state to the formal radical/charge site from a carbon atom four atoms removed from the charge/radical site (the gamma-carbon); subsequent rearrangement of electron density leads to expulsion of an olefin molecule. This term was originally applied to ketone ions where the charge/radical site is the carbonyl oxygen, but it is now more widely applied.
1727 
1728  /// photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1730 
1731  /// multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1733 
1734  /// MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption of one or more photons.
1736 
1737  /// partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all of the ion charge is transferred to the neutral.
1739 
1740  /// ion reaction: Chemical transformation involving an ion.
1742 
1743  /// superelastic collision: Collision in which the translational energy of the fast-moving collision partner is increased at the expense of internal energy of one or both collision partners.
1745 
1746  /// surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either chemically different species or a change in the internal energy of the reactant ion.
1748 
1749  /// unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one, irrespective of whether the dissociative state is that of a metastable ion produced in the ion source or results from collisional excitation of a stable ion.
1751 
1752  /// scan: Function or process of the mass spectrometer where it records a spectrum.
1753  MS_scan = 1000441,
1754 
1755  /// spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical analysis.
1756  MS_spectrum = 1000442,
1757 
1758  /// mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio.
1760 
1761  /// m/z Separation Method: Mass/charge separation Method.
1763 
1764  /// sequential m/z separation method: Sequential m/z separation method.
1766 
1767  /// fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1769 
1770  /// FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ions having a translational energy of several thousand eV with a solid sample.
1772 
1773  /// LTQ: Finnigan LTQ MS.
1774  MS_LTQ = 1000447,
1775 
1776  /// LTQ FT: Finnigan LTQ FT MS.
1777  MS_LTQ_FT = 1000448,
1778 
1779  /// LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
1780  MS_LTQ_Orbitrap = 1000449,
1781 
1782  /// LXQ: Finnigan LXQ MS.
1783  MS_LXQ = 1000450,
1784 
1785  /// mass analyzer: Terms used to describe the Analyzer.
1786  MS_mass_analyzer = 1000451,
1787 
1788  /// analyzer (mass analyzer): Terms used to describe the Analyzer.
1790 
1791  /// data transformation: Terms used to describe types of data processing.
1793 
1794  /// data processing (data transformation): Terms used to describe types of data processing.
1796 
1797  /// detector: The device that detects ions.
1798  MS_detector = 1000453,
1799 
1800  /// instrument additional description: Additional terms to describe the instrument as outlined in the mass spec doc, Appendix 1, section 1.5.
1802 
1803  /// ion selection attribute: Ion selection properties that are associated with a value.
1805 
1806  /// precursor activation: Terms to describe the precursor activation.
1808 
1809  /// activation (precursor activation): Terms to describe the precursor activation.
1811 
1812  /// sample: Terms to describe the sample.
1813  MS_sample = 1000457,
1814 
1815  /// source: Terms to describe the source.
1816  MS_source = 1000458,
1817 
1818  /// spectrum instrument description: Terms used to describe the spectrum.
1820 
1821  /// unit: Terms to describe units.
1822  MS_unit_OBSOLETE = 1000460,
1823 
1824  /// additional description: Terms to describe Additional.
1826 
1827  /// ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise manipulate ions.
1828  MS_ion_optics = 1000462,
1829 
1830  /// instrument: Description of the instrument or the mass spectrometer.
1831  MS_instrument = 1000463,
1832 
1833  /// instrument configuration (instrument): Description of the instrument or the mass spectrometer.
1835 
1836  /// mass unit: A unit of measurement for mass.
1838 
1839  /// scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
1840  MS_scan_polarity = 1000465,
1841 
1842  /// alternating: Alternating.
1844 
1845  /// 1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap family. It provides fast polarity switching and multisignal data acquisition capabilities in a single run while also providing 5 stages of automated data dependent MS2 and 11 stages of manual MS2.
1847 
1848  /// 6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with an entry level single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6110 Quadrupole mass spectrometer has m/z range of 10-1500 and 2500 u/s scan speed. It proves useful for wide range of SIM quantitative applications.
1850 
1851  /// 6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent mass spectrometers. 6120 quadrupole mass spectrometer has m/z range of 10-1500, 2500 u/s scan speed and utilizes multiple signal acquisition.
1853 
1854  /// 6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 series of Agilent mass spectrometers. The 6130 quadrupole mass spectrometer has m/z range of 2-3000, 2500 u/s scan speed in standard mode and 5250 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1856 
1857  /// 6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a single quadrupole mass spectrometer from the 6100 Series of Agilent quadrupole mass spectrometers. 6140 Quadrupole mass spectrometer has m/z range of 10-1350, 2500 u/s scan speed in standard mode and 10000 u/s speed in fast-scan mode. It also uses multiple signal acquisition.
1859 
1860  /// 6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
1862 
1863  /// 6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.35 resolution and mass range of 200-4000 with resolution of 3-4. The scan speed varies from 1650-27000 for the respective mass ranges.
1865 
1866  /// 6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1868 
1869  /// 6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1871 
1872  /// 6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined with a 6300 series Agilent ion trap. It has a mass range of 50-2200 between 0.6 to 0.25 resolution and mass range of 200-4000 with resolution of less than 3. The scan speed varies from 1650-27000 for the respective mass ranges.
1874 
1875  /// 6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1877 
1878  /// 6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. Mass range of the mass spectrometer is 15-1650 m/z, resolution is at three settings of 0.7 u (unit), 1.2 u (wide) and 2.5 u (widest). The mass accuracy for 6410 mass spectrometer is 0.1 across the mass range. The collision cell is a hexapole with linear acceleration.
1880 
1881  /// 1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrometers. It has ESI, APCI and APPI ion sources and is a useful ion trap when the amount of sample is not the limiting factor.
1883 
1884  /// purgatory: Terms that will likely become obsolete unless there are wails of dissent.
1886 
1887  /// mass analyzer attribute: Analyzer properties that are associated with a value.
1889 
1890  /// detector attribute: Detector attribute recognized as a value.
1892 
1893  /// source attribute: Property of a source device that need a value.
1895 
1896  /// Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
1898 
1899  /// orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution. The frequency of harmonic oscillations of the orbitally trapped ions along the axis of the electrostatic field is independent of the ion velocity and is inversely proportional to the square root of m/z so that the trap can be used as a mass analyzer.
1900  MS_orbitrap = 1000484,
1901 
1902  /// nanospray inlet: Nanospray Inlet.
1904 
1905  /// source potential: Potential difference at the MS source in volts.
1907 
1908  /// ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry.
1910 
1911  /// Hitachi instrument model: Hitachi instrument model.
1913 
1914  /// Varian instrument model: Varian instrument model.
1916 
1917  /// Agilent instrument model: Agilent instrument model.
1919 
1920  /// Dionex instrument model: Dionex instrument model.
1922 
1923  /// Thermo Electron instrument model: Thermo Electron Corporation instrument model.
1925 
1926  /// Finnigan MAT instrument model: Finnigan MAT instrument model.
1928 
1929  /// Thermo Scientific instrument model: Thermo Scientific instrument model.
1931 
1932  /// Applied Biosystems instrument model: Applied Biosystems instrument model.
1934 
1935  /// ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
1937 
1938  /// instrument attribute: Instrument properties that are associated with a value.
1940 
1941  /// zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1942  MS_zoom_scan = 1000497,
1943 
1944  /// enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acquired. This is typically achieved by scanning a more narrow m/z window or scanning with a lower scan rate.
1946 
1947  /// full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range.
1949 
1950  /// spectrum attribute: Spectrum properties that are associated with a value.
1952 
1953  /// scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
1955 
1956  /// scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
1958 
1959  /// dwell time: The time spent gathering data across a peak.
1960  MS_dwell_time = 1000502,
1961 
1962  /// scan attribute: Scan properties that are associated with a value.
1964 
1965  /// base peak m/z: M/z value of the signal of highest intensity in the mass spectrum.
1966  MS_base_peak_m_z = 1000504,
1967 
1968  /// base peak intensity: The intensity of the greatest peak in the mass spectrum.
1970 
1971  /// ion role: Ion Role.
1973 
1974  /// ion attribute: Ion properties that are associated with a value.
1976 
1977  /// ion chemical type: Ion Type.
1979 
1980  /// activation energy: Activation Energy.
1982 
1983  /// precursor activation attribute: Precursor Activation Attribute.
1985 
1986  /// ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
1987  MS_ms_level = 1000511,
1988 
1989  /// filter string: A string unique to Thermo instrument describing instrument settings for the scan.
1990  MS_filter_string = 1000512,
1991 
1992  /// binary data array: A data array of values.
1994 
1995  /// m/z array: A data array of m/z values.
1996  MS_m_z_array = 1000514,
1997 
1998  /// intensity array: A data array of intensity values.
2000 
2001  /// charge array: A data array of charge values.
2002  MS_charge_array = 1000516,
2003 
2004  /// signal to noise array: A data array of signal-to-noise values.
2006 
2007  /// binary data type: Encoding type of binary data specifying the binary representation and precision, e.g. 64-bit float.
2009 
2010  /// 32-bit integer: Signed 32-bit little-endian integer.
2012 
2013  /// 16-bit float: Signed 16-bit float.
2015 
2016  /// 32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
2017  MS_32_bit_float = 1000521,
2018 
2019  /// 64-bit integer: Signed 64-bit little-endian integer.
2021 
2022  /// 64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
2023  MS_64_bit_float = 1000523,
2024 
2025  /// data file content: Describes the data content on the file.
2027 
2028  /// spectrum representation: Way in which the spectrum is represented, either with regularly spaced data points or with a list of centroided peaks.
2030 
2031  /// Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acquisition.
2033 
2034  /// highest observed m/z: Highest m/z value observed in the m/z array.
2036 
2037  /// lowest observed m/z: Lowest m/z value observed in the m/z array.
2039 
2040  /// instrument serial number: Serial Number of the instrument.
2042 
2043  /// file format conversion: Conversion of one file format to another.
2045 
2046  /// software: Software related to the recording or transformation of spectra.
2047  MS_software = 1000531,
2048 
2049  /// Xcalibur: Thermo Finnigan software for data acquisition and analysis.
2050  MS_Xcalibur = 1000532,
2051 
2052  /// Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
2053  MS_Bioworks = 1000533,
2054 
2055  /// MassLynx: Micromass software for data acquisition and analysis.
2056  MS_MassLynx = 1000534,
2057 
2058  /// FlexAnalysis: Bruker software for data analysis.
2059  MS_FlexAnalysis = 1000535,
2060 
2061  /// Data Explorer: Applied Biosystems software for data acquisition and analysis.
2062  MS_Data_Explorer = 1000536,
2063 
2064  /// 4700 Explorer: Applied Biosystems software for data acquisition and analysis.
2065  MS_4700_Explorer = 1000537,
2066 
2067  /// massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2068  MS_massWolf = 1000538,
2069 
2070  /// wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML. MassWolf was originally developed at the Institute for Systems Biology.
2072 
2073  /// Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysis system.
2075 
2076  /// FlexControl: Bruker software for data acquisition.
2077  MS_FlexControl = 1000540,
2078 
2079  /// ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML. ReAdW was originally developed at the Institute for Systems Biology. Its whimsical interleaved spelling and capitalization is pronounced \"readraw\".
2080  MS_ReAdW = 1000541,
2081 
2082  /// MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format. MzStar was originally developed at the Institute for Systems Biology. It is now obsoleted by the MzWiff program.
2083  MS_MzStar = 1000542,
2084 
2085  /// data processing action: Data processing attribute used to describe the type of data processing performed on the data file.
2087 
2088  /// Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format.
2090 
2091  /// Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format.
2093 
2094  /// Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file format.
2096 
2097  /// object attribute: Object Attribute.
2099 
2100  /// sample attribute: Sample properties that are associated with a value.
2102 
2103  /// selection window attribute: Selection window properties that are associated with a value.
2105 
2106  /// time unit: Time Unit.
2108 
2109  /// Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
2110  MS_Analyst = 1000551,
2111 
2112  /// maldi spot identifier: Maldi Spot Identifier.
2114 
2115  /// Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
2116  MS_Trapper = 1000553,
2117 
2118  /// LCQ Deca: ThermoFinnigan LCQ Deca.
2119  MS_LCQ_Deca = 1000554,
2120 
2121  /// LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
2123 
2124  /// LTQ Orbitrap XL: LTQ Orbitrap XL.
2126 
2127  /// LTQ FT Ultra: LTQ FT Ultra.
2128  MS_LTQ_FT_Ultra = 1000557,
2129 
2130  /// GC Quantum: GC Quantum.
2131  MS_GC_Quantum = 1000558,
2132 
2133  /// spectrum type: Spectrum type.
2134  MS_spectrum_type = 1000559,
2135 
2136  /// mass spectrometer file format: The format of the file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
2138 
2139  /// data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrity of data by detecting errors in data.
2141 
2142  /// ABI WIFF format: Applied Biosystems WIFF file format.
2144 
2145  /// Thermo RAW format: Thermo Scientific RAW file format.
2147 
2148  /// PSI mzData format: Proteomics Standards Inititative mzData file format.
2150 
2151  /// Micromass PKL format: Micromass PKL file format.
2153 
2154  /// ISB mzXML format: Institute of Systems Biology mzXML file format.
2156 
2157  /// Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
2159 
2160  /// MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used to check the integrity of files.
2161  MS_MD5 = 1000568,
2162 
2163  /// SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Security Agency (NSA) and published by the NIST as a U. S. government standard. It is also used to verify file integrity.
2164  MS_SHA_1 = 1000569,
2165 
2166  /// spectra combination: Method used to combine the mass spectra.
2168 
2169  /// sum of spectra: Spectra Sum.
2171 
2172  /// binary data compression type: Compression Type.
2174 
2175  /// median of spectra: Spectra is combined by calculating the median of the spectra.
2177 
2178  /// zlib compression: Zlib.
2180 
2181  /// mean of spectra: Spectra is combined by calculating the mean of the spectra.
2183 
2184  /// no compression: No Compression.
2186 
2187  /// raw data file: Describes the type of file and its content.
2188  MS_raw_data_file = 1000577,
2189 
2190  /// source file (raw data file): Describes the type of file and its content.
2192 
2193  /// LCQ Fleet: LCQ Fleet.
2194  MS_LCQ_Fleet = 1000578,
2195 
2196  /// MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2197  MS_MS1_spectrum = 1000579,
2198 
2199  /// full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2201 
2202  /// Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2204 
2205  /// Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2207 
2208  /// Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage of a multi-stage experiment.
2210 
2211  /// MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2212  MS_MSn_spectrum = 1000580,
2213 
2214  /// multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2216 
2217  /// nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2219 
2220  /// product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record product ion spectra where n is the number of product ion stages (progeny ions). For ion traps, sequential MS/MS experiments can be undertaken where n > 2 whereas for a simple triple quadrupole system n=2. Use the term ms level (MS:1000511) for specifying n.
2222 
2223  /// CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and in which a particular multi-step reaction path is monitored.
2224  MS_CRM_spectrum = 1000581,
2225 
2226  /// SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2227  MS_SIM_spectrum = 1000582,
2228 
2229  /// MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2231 
2232  /// multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2234 
2235  /// selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the abundances of one ion or several ions of specific m/z values are recorded rather than the entire mass spectrum (Selected Ion Monitoring).
2237 
2238  /// SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2239  MS_SRM_spectrum = 1000583,
2240 
2241  /// MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2243 
2244  /// multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2246 
2247  /// selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corresponding to m/z values of selected precursor ions a recorded via two or more stages of mass spectrometry. The precursor/product ion pair is called a transition pair. Data can be obtained for a single transition pair or multiple transition pairs. Multiple time segments of different transition pairs can exist in a single file. Single precursor ions can have multiple product ions consitituting multiple transition pairs. Selected reaction monitoring can be performed as tandem mass spectrometry in time or tandem mass spectrometry in space.
2249 
2250  /// mzML format: Proteomics Standards Inititative mzML file format.
2251  MS_mzML_format = 1000584,
2252 
2253  /// contact attribute: Details about a person or organization to contact in case of concern or discussion about the file.
2255 
2256  /// contact name: Name of the contact person or organization.
2257  MS_contact_name = 1000586,
2258 
2259  /// contact address: Postal address of the contact person or organization.
2261 
2262  /// contact URL: Uniform Resource Locator related to the contact person or organization.
2263  MS_contact_URL = 1000588,
2264 
2265  /// contact email: Email address of the contact person or organization.
2266  MS_contact_email = 1000589,
2267 
2268  /// contact affiliation: Home institution of the contact person.
2270 
2271  /// MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML format. MzWiff is currently maintained at the Institute for Systems Biology. It replaces the slower mzStar program.
2272  MS_MzWiff = 1000591,
2273 
2274  /// smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real peak signal. Many algorithms can be applied for this process.
2275  MS_smoothing = 1000592,
2276 
2277  /// baseline reduction: A process of removal of varying intensities generated due to variable energy absorption before further processing can take place. Baseline reduction facilitates meaningful comparision between intensities of m/z values.
2279 
2280  /// low intensity data point removal: The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2282 
2283  /// thresholding (low intensity data point removal): The removal of very low intensity data points that are likely to be spurious noise rather than real signal.
2285 
2286  /// time array: A data array of relative time offset values from a reference time.
2287  MS_time_array = 1000595,
2288 
2289  /// measurement method: An attribute of resolution when recording the detector response in absence of the analyte.
2291 
2292  /// ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectrometer.
2294 
2295  /// electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2297 
2298  /// ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing fragmentation of cations (e.g. peptides or proteins) by transferring electrons to them.
2300 
2301  /// pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2303 
2304  /// PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
2306 
2307  /// Proteios: Database application and analysis platform for proteomics.
2308  MS_Proteios = 1000600,
2309 
2310  /// ProteinLynx Global Server: Waters software for data analysis.
2312 
2313  /// Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
2315 
2316  /// Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model.
2318 
2319  /// LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
2320  MS_LCMS_IT_TOF = 1000604,
2321 
2322  /// LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
2323  MS_LCMS_2010EV = 1000605,
2324 
2325  /// LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
2326  MS_LCMS_2010A = 1000606,
2327 
2328  /// AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
2330 
2331  /// AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
2332  MS_AXIMA_QIT = 1000608,
2333 
2334  /// AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
2336 
2337  /// AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS.
2339 
2340  /// AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS.
2342 
2343  /// AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS.
2345 
2346  /// DTA format: SEQUEST DTA file format.
2347  MS_DTA_format = 1000613,
2348 
2349  /// ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global Server.
2351 
2352  /// ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2354 
2355  /// pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
2357 
2358  /// preset scan configuration: A user-defined scan configuration that specifies the instrumental settings in which a spectrum is acquired. An instrument may cycle through a list of preset scan configurations to acquire data. This is a more generic term for the Thermo \"scan event\", which is defined in the Thermo Xcalibur glossary as: a mass spectrometer scan that is defined by choosing the necessary scan parameter settings. Multiple scan events can be defined for each segment of time.
2360 
2361  /// wavelength array: A data array of electromagnetic radiation wavelength values.
2363 
2364  /// highest observed wavelength: Highest wavelength observed in an EMR spectrum.
2366 
2367  /// lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
2369 
2370  /// PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum).
2372 
2373  /// photodiode array detector: An array detector used to record spectra in the ultraviolet and visible region of light.
2375 
2376  /// PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visible region of light.
2378 
2379  /// Surveyor PDA: Surveyor PDA.
2380  MS_Surveyor_PDA = 1000622,
2381 
2382  /// Accela PDA: Accela PDA.
2383  MS_Accela_PDA = 1000623,
2384 
2385  /// inductive detector: Inductive detector.
2387 
2388  /// image current detector (inductive detector): Inductive detector.
2390 
2391  /// chromatogram: The representation of detector response versus time.
2392  MS_chromatogram = 1000625,
2393 
2394  /// chromatogram type: Broad category or type of a chromatogram.
2396 
2397  /// selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2399 
2400  /// SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of the measurements of a specific single ion current at each time point.
2402 
2403  /// basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each time point.
2405 
2406  /// low intensity threshold: Threshold below which some action is taken.
2408 
2409  /// data processing parameter: Data processing parameter used in the data processing performed on the data file.
2411 
2412  /// high intensity threshold: Threshold above which some action is taken.
2414 
2415  /// Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
2416  MS_Q_Tof_Premier = 1000632,
2417 
2418  /// possible charge state: A possible charge state of the ion in a situation where the charge of an ion is known to be one of several possible values rather than a completely unknown value or determined to be a specific charge with reasonable certainty.
2420 
2421  /// DSQ: ThermoFinnigan DSQ GC-MS.
2422  MS_DSQ = 1000634,
2423 
2424  /// ITQ 700: Thermo Scientific ITQ 700 GC-MS.
2425  MS_ITQ_700 = 1000635,
2426 
2427  /// ITQ 900: Thermo Scientific ITQ 900 GC-MS.
2428  MS_ITQ_900 = 1000636,
2429 
2430  /// ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
2431  MS_ITQ_1100 = 1000637,
2432 
2433  /// LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
2434  MS_LTQ_XL_ETD = 1000638,
2435 
2436  /// LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
2438 
2439  /// DFS: Thermo Scientific DFS HR GC-MS.
2440  MS_DFS = 1000640,
2441 
2442  /// DSQ II: Thermo Scientific DSQ II GC-MS.
2443  MS_DSQ_II = 1000641,
2444 
2445  /// MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
2446  MS_MALDI_LTQ_XL = 1000642,
2447 
2448  /// MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
2450 
2451  /// TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
2453 
2454  /// Element XR: Thermo Scientific Element XR HR-ICP-MS.
2455  MS_Element_XR = 1000645,
2456 
2457  /// Element 2: Thermo Scientific Element 2 HR-ICP-MS.
2458  MS_Element_2 = 1000646,
2459 
2460  /// Element GD: Thermo Scientific Element GD Glow Discharge MS.
2461  MS_Element_GD = 1000647,
2462 
2463  /// GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
2464  MS_GC_IsoLink = 1000648,
2465 
2466  /// Exactive: Thermo Scientific Exactive MS.
2467  MS_Exactive = 1000649,
2468 
2469  /// Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins.
2471 
2472  /// 3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
2473  MS_3200_QTRAP = 1000651,
2474 
2475  /// 4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer.
2477 
2478  /// API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
2479  MS_API_3200 = 1000653,
2480 
2481  /// API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
2482  MS_API_5000 = 1000654,
2483 
2484  /// QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
2485  MS_QSTAR_Elite = 1000655,
2486 
2487  /// QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
2488  MS_QSTAR_Pulsar = 1000656,
2489 
2490  /// QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
2491  MS_QSTAR_XL = 1000657,
2492 
2493  /// 4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
2495 
2496  /// 4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2498 
2499  /// GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
2500  MS_GPS_Explorer = 1000661,
2501 
2502  /// LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
2504 
2505  /// ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant.
2507 
2508  /// TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
2510 
2511  /// MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling.
2513 
2514  /// MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
2516 
2517  /// BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
2518  MS_BioAnalyst = 1000667,
2519 
2520  /// Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
2521  MS_Pro_ID = 1000668,
2522 
2523  /// Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT.
2524  MS_Pro_ICAT = 1000669,
2525 
2526  /// Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
2527  MS_Pro_Quant = 1000670,
2528 
2529  /// Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
2530  MS_Pro_BLAST = 1000671,
2531 
2532  /// Cliquid: SCIEX Cliquid software for data analysis and quantitation.
2533  MS_Cliquid = 1000672,
2534 
2535  /// MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
2537 
2538  /// MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
2539  MS_MultiQuant = 1000674,
2540 
2541  /// 6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2543 
2544  /// 6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 13,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2546 
2547  /// 6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid chromatography instrument combined with a Agilent time of flight mass spectrometer. This time of flight mass spectrometer has a m/z range of 50-12000, mass accuracy of less than 2 ppm and resolution greater than 26,000 at m/z 2722. It has multiple ion sources and can be used with multimode ion sources.
2549 
2550  /// MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
2552 
2553  /// MassHunter Easy Access: Software for open access data acquisition.
2555 
2556  /// MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments.
2558 
2559  /// MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-of-Flight data.
2561 
2562  /// MassHunter Metabolite ID: Software for identification of metabolites.
2564 
2565  /// MassHunter BioConfirm: Software for protein characterization.
2567 
2568  /// Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2569  MS_Genespring_MS = 1000684,
2570 
2571  /// MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data.
2573 
2574  /// METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human metabolites.
2575  MS_METLIN = 1000686,
2576 
2577  /// Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of complex protein digest mixtures.
2579 
2580  /// 6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass spectrometers.
2582 
2583  /// Agilent software: Agilent software for data acquisition and analysis.
2585 
2586  /// SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
2588 
2589  /// Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis.
2591 
2592  /// Bruker software: Bruker software for data acquisition and analysis.
2594 
2595  /// Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
2597 
2598  /// Waters software: Waters software for data acquisition and analysis.
2600 
2601  /// apex ultra: Bruker Daltonics' apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
2602  MS_apex_ultra = 1000695,
2603 
2604  /// autoflex III smartbeam: Bruker Daltonics' autoflex III smartbeam: MALDI TOF.
2606 
2607  /// Bruker Daltonics HCT Series: Bruker Daltonics' HCT Series.
2609 
2610  /// HCTultra: Bruker Daltonics' HCTultra: ESI TOF, Nanospray, APCI, APPI.
2611  MS_HCTultra = 1000698,
2612 
2613  /// HCTultra PTM: Bruker Daltonics' HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
2614  MS_HCTultra_PTM = 1000699,
2615 
2616  /// HCTultra ETD II: Bruker Daltonics' HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
2618 
2619  /// microflex LT: Bruker Daltonics' microflex LT: MALDI TOF.
2620  MS_microflex_LT = 1000701,
2621 
2622  /// micrOTOF: Bruker Daltonics' micrOTOF: ESI TOF, APCI, APPI.
2623  MS_micrOTOF = 1000702,
2624 
2625  /// micrOTOF-Q: Bruker Daltonics' micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
2626  MS_micrOTOF_Q = 1000703,
2627 
2628  /// micrOTOF-Q II: Bruker Daltonics' micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI.
2629  MS_micrOTOF_Q_II = 1000704,
2630 
2631  /// ultraflex III TOF/TOF: Bruker Daltonics' ultraflex III TOF/TOF: MALDI TOF.
2633 
2634  /// apexControl: Bruker software for data acquisition.
2635  MS_apexControl = 1000706,
2636 
2637  /// BioTools: Bruker software for data analysis.
2638  MS_BioTools = 1000707,
2639 
2640  /// CLINPROT: Bruker CLINPROT software.
2641  MS_CLINPROT = 1000708,
2642 
2643  /// CLINPROT micro: Bruker CLINPROT micro software.
2645 
2646  /// CLINPROT robot: Bruker CLINPROT robot software.
2648 
2649  /// ClinProTools: Bruker ClinProTools software.
2650  MS_ClinProTools = 1000711,
2651 
2652  /// Compass: Bruker Compass software.
2653  MS_Compass = 1000712,
2654 
2655  /// Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
2657 
2658  /// Compass for micrOTOF: Bruker Compass for micrOTOF software.
2660 
2661  /// Compass OpenAccess: Bruker compass OpenAccess software.
2663 
2664  /// Compass Security Pack: Bruker compass Security Pack software.
2666 
2667  /// CompassXport: Bruker stand-alone software for data conversion.
2668  MS_CompassXport = 1000717,
2669 
2670  /// CompassXtract: Bruker software library for data access.
2671  MS_CompassXtract = 1000718,
2672 
2673  /// DataAnalysis: Bruker software for data analysis.
2674  MS_DataAnalysis = 1000719,
2675 
2676  /// dpControl: Bruker software for data acquisition.
2677  MS_dpControl = 1000720,
2678 
2679  /// esquireControl: Bruker software for data acquisition.
2681 
2682  /// flexImaging: Bruker software for data analysis.
2683  MS_flexImaging = 1000722,
2684 
2685  /// GENOLINK: Bruker GENOLINK software.
2686  MS_GENOLINK = 1000723,
2687 
2688  /// GenoTools: Bruker GenoTools software.
2689  MS_GenoTools = 1000724,
2690 
2691  /// HCTcontrol: Bruker software for data acquisition.
2692  MS_HCTcontrol = 1000725,
2693 
2694  /// micrOTOFcontrol: Bruker software for data acquisition.
2696 
2697  /// PolyTools: Bruker PolyTools software.
2698  MS_PolyTools = 1000727,
2699 
2700  /// ProfileAnalysis: Bruker software for data analysis.
2702 
2703  /// PROTEINEER: Bruker PROTEINEER software.
2704  MS_PROTEINEER = 1000729,
2705 
2706  /// PROTEINEER dp: Bruker PROTEINEER dp software.
2707  MS_PROTEINEER_dp = 1000730,
2708 
2709  /// PROTEINEER fc: Bruker PROTEINEER fc software.
2710  MS_PROTEINEER_fc = 1000731,
2711 
2712  /// PROTEINEER spII: Bruker PROTEINEER spII software.
2714 
2715  /// PROTEINEER-LC: Bruker PROTEINEER-LC software.
2716  MS_PROTEINEER_LC = 1000733,
2717 
2718  /// ProteinScape: Bruker ProteinScape software.
2719  MS_ProteinScape = 1000734,
2720 
2721  /// PureDisk: BrukerPureDisk software.
2722  MS_PureDisk = 1000735,
2723 
2724  /// QuantAnalysis: Bruker software for data analysis.
2725  MS_QuantAnalysis = 1000736,
2726 
2727  /// spControl: Bruker software for data acquisition.
2728  MS_spControl = 1000737,
2729 
2730  /// TargetAnalysis: Bruker TargetAnalysis software.
2732 
2733  /// WARP-LC: Bruker WARP-LC software.
2734  MS_WARP_LC = 1000739,
2735 
2736  /// parameter file: Parameter file used to configure the acquisition of raw data on the instrument.
2738 
2739  /// Conversion to dta: Conversion to dta format.
2741 
2742  /// Bioworks SRF format: Thermo Finnigan SRF file format.
2744 
2745  /// TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
2747 
2748  /// selected ion m/z: Mass-to-charge ratio of an selected ion.
2750 
2751  /// retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free proteomics.
2753 
2754  /// high intensity data point removal: The removal of very high intensity data points.
2756 
2757  /// completion time: The time that a data processing action was finished.
2759 
2760  /// SSQ 7000: ThermoFinnigan SSQ 7000 MS.
2761  MS_SSQ_7000 = 1000748,
2762 
2763  /// TSQ 7000: ThermoFinnigan TSQ 7000 MS.
2764  MS_TSQ_7000 = 1000749,
2765 
2766  /// TSQ: ThermoFinnigan TSQ MS.
2767  MS_TSQ = 1000750,
2768 
2769  /// TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
2771 
2772  /// TOPP software: TOPP (The OpenMS proteomics pipeline) software.
2773  MS_TOPP_software = 1000752,
2774 
2775  /// BaselineFilter: Removes the baseline from profile spectra using a top-hat filter.
2777 
2778  /// DBExporter: Exports data from an OpenMS database to a file.
2779  MS_DBExporter = 1000754,
2780 
2781  /// DBImporter: Imports data to an OpenMS database.
2782  MS_DBImporter = 1000755,
2783 
2784  /// FileConverter: Converts between different MS file formats.
2785  MS_FileConverter = 1000756,
2786 
2787  /// FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files.
2788  MS_FileFilter = 1000757,
2789 
2790  /// FileMerger: Merges several MS files into one file.
2791  MS_FileMerger = 1000758,
2792 
2793  /// InternalCalibration: Applies an internal calibration.
2795 
2796  /// MapAligner: Corrects retention time distortions between maps.
2798 
2799  /// MapNormalizer: Normalizes peak intensities in an MS run.
2800  MS_MapNormalizer = 1000761,
2801 
2802  /// NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
2804 
2805  /// PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
2807 
2808  /// Resampler: Transforms an LC/MS map into a resampled map or a png image.
2809  MS_Resampler = 1000764,
2810 
2811  /// SpectraFilter: Applies a filter to peak spectra.
2813 
2814  /// TOFCalibration: Applies time of flight calibration.
2816 
2817  /// native spectrum identifier format: Describes how the native spectrum identifiers are formated.
2819 
2820  /// nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers are formated.
2822 
2823  /// Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumber=xsd:positiveInteger scan=xsd:positiveInteger.
2825 
2826  /// Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
2828 
2829  /// WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeInteger cycle=xsd:nonNegativeInteger experiment=xsd:nonNegativeInteger.
2831 
2832  /// Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2834 
2835  /// Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2837 
2838  /// Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
2840 
2841  /// multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
2843 
2844  /// single peak list nativeID format: Native format defined by file=xsd:IDREF.
2846 
2847  /// scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
2849 
2850  /// spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
2852 
2853  /// charge state calculation: A process that infers the charge state of an MSn spectrum's precursor(s) by the application of some algorithm.
2855 
2856  /// below precursor intensity dominance charge state calculation: Infers charge state as single or ambiguously multiple by determining the fraction of intensity below the precursor m/z.
2858 
2859  /// precursor recalculation: A process that recalculates existing precursor selected ions with one or more algorithmically determined precursor selected ions.
2861 
2862  /// msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection in the isolation windows of high accuracy MS precursor scans.
2864 
2865  /// Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree k) on a distribution (of at least k+1 equally spaced points) to determine the smoothed value for each point. It tends to preserve features of the distribution such as relative maxima, minima and width, which are usually 'flattened' by other adjacent averaging techniques.
2867 
2868  /// LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted polynomial regression. At each point in the data set a low-degree polynomial is fit to a subset of the data, with explanatory variable values near the point whose response is being estimated. The polynomial is fit using weighted least squares, giving more weight to points near the point whose response is being estimated and less weight to points further away. The value of the regression function for the point is then obtained by evaluating the local polynomial using the explanatory variable values for that data point. The LOESS fit is complete after regression function values have been computed for each of the n data points. Many of the details of this method, such as the degree of the polynomial model and the weights, are flexible.
2870 
2871  /// Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2873 
2874  /// binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2876 
2877  /// Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-dimensional Gaussian function.
2879 
2880  /// moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2882 
2883  /// box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2885 
2886  /// boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2888 
2889  /// sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two or more adjacent points. The more adjacent points that used, the stronger the smoothing effect.
2891 
2892  /// non-standard data array: A data array that contains data not covered by any other term in this group. Please do not use this term, if the binary data array type might be commonly used - contact the PSI-MS working group in order to have another CV term added.
2894 
2895  /// inclusive low intensity threshold: Threshold at or below which some action is taken.
2897 
2898  /// inclusive high intensity threshold: Threshold at or above which some action is taken.
2900 
2901  /// enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared to singly-charged ions.
2903 
2904  /// time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a time delay, which allows the observation of lower energy fragmentation processes after precursor ion activation.
2906 
2907  /// enhanced resolution scan: Scan with enhanced resolution.
2909 
2910  /// isolation window attribute: Isolation window parameter.
2912 
2913  /// isolation window upper limit: The highest m/z being isolated in an isolation window.
2915 
2916  /// isolation window lower limit: The lowest m/z being isolated in an isolation window.
2918 
2919  /// no combination: Use this term if only one scan was recorded or there is no information about scans available.
2921 
2922  /// spectrum title: A free-form text title describing a spectrum.
2924 
2925  /// peak list scans: A list of scan numbers and or scan ranges associated with a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2927 
2928  /// peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list. If possible the list of scans should be converted to native spectrum identifiers instead of using this term.
2930 
2931  /// custom unreleased software tool: A software tool that has not yet been released. The value should describe the software. Please do not use this term for publicly available software - contact the PSI-MS working group in order to have another CV term added.
2933 
2934  /// mass resolving power: The observed mass divided by the difference between two masses that can be separated: m/dm. The procedure by which dm was obtained and the mass at which the measurement was made should be reported.
2936 
2937  /// area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2939 
2940  /// sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The area defined by all raw data points that belong to the peak is reported.
2942 
2943  /// height peak picking: Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2945 
2946  /// max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to convert profile data to centroided data. The maximum intensity of all raw data points that belong to the peak is reported.
2948 
2949  /// analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan. The value corresponds to the neutral loss or neutral gain value.
2951 
2952  /// electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2954 
2955  /// EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagnetic radiation as a function of the wavelength.
2957 
2958  /// emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or molecules when excited.
2960 
2961  /// absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms or molecules when excited.
2963 
2964  /// Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
2965  MS_Th_s = 1000807,
2966 
2967  /// chromatogram attribute: Chromatogram properties that are associated with a value.
2969 
2970  /// chromatogram title: A free-form text title describing a chromatogram.
2972 
2973  /// mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a function of the retention time.
2975 
2976  /// electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function of the retention time.
2978 
2979  /// EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnetic properties as a function of the retention time.
2981 
2982  /// absorption chromatogram: The measurement of light absorbed by the sample as a function of the retention time.
2984 
2985  /// emission chromatogram: The measurement of light emitted by the sample as a function of the retention time.
2987 
2988  /// counts per second: The number of counted events observed per second in one or a group of elements of a detector.
2990 
2991  /// Bruker BAF format: Bruker BAF raw file format.
2993 
2994  /// Bruker U2 format: Bruker HyStar U2 file format.
2996 
2997  /// HyStar: Bruker software for hyphenated experiments.
2998  MS_HyStar = 1000817,
2999 
3000  /// Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
3002 
3003  /// Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
3005 
3006  /// flow rate array: A data array of flow rate measurements.
3008 
3009  /// pressure array: A data array of pressure measurements.
3011 
3012  /// temperature array: A data array of temperature measurements.
3014 
3015  /// Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger.
3017 
3018  /// no nativeID format: No nativeID format indicates that the file tagged with this term does not contain spectra that can have a nativeID format.
3020 
3021  /// Bruker FID format: Bruker FID file format.
3023 
3024  /// elution time: The time of elution from all used chromatographic columns (one or more) in the chromatographic separation step, relative to the start of the chromatography.
3025  MS_elution_time = 1000826,
3026 
3027  /// isolation window target m/z: The primary or reference m/z about which the isolation window is defined.
3029 
3030  /// isolation window lower offset: The extent of the isolation window in m/z below the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3032 
3033  /// isolation window upper offset: The extent of the isolation window in m/z above the isolation window target m/z. The lower and upper offsets may be asymmetric about the target m/z.
3035 
3036  /// sample preparation: Properties of the preparation steps which took place before the measurement was performed.
3038 
3039  /// MALDI matrix application: Attributes to describe the technique how the sample is prepared with the matrix solution.
3041 
3042  /// matrix application type: Describes the technique how the matrix is put on the sample target.
3044 
3045  /// matrix solution: Describes the chemical solution used as matrix.
3047 
3048  /// matrix solution concentration: Concentration of the chemical solution used as matrix.
3050 
3051  /// dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
3053 
3054  /// printed MALDI matrix preparation: Printed MALDI matrix preparation.
3056 
3057  /// sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
3059 
3060  /// precoated MALDI sample plate: Precoated MALDI sample plate.
3062 
3063  /// laser: Device that emits light (electromagnetic radiation) through a process called stimulated emission. The term is an acronym for Light Amplification by Stimulated Emission of Radiation.
3064  MS_laser = 1000840,
3065 
3066  /// laser attribute: Laser properties that are associated with a value.
3068 
3069  /// laser type: Type of laser used for desorption purpose.
3070  MS_laser_type = 1000842,
3071 
3072  /// wavelength: The distance between two peaks of the emitted laser beam.
3074 
3075  /// focus diameter x: Describes the diameter of the laser beam in x direction.
3077 
3078  /// focus diameter y: Describes the diameter of the laser beam in y direction.
3080 
3081  /// pulse energy: Describes output energy of the laser system. May be attenuated by filters or other means.
3082  MS_pulse_energy = 1000846,
3083 
3084  /// pulse duration: Describes how long the laser beam was emitted from the laser device.
3086 
3087  /// attenuation: Describes the reduction of the intensity of the laser beam energy.
3088  MS_attenuation = 1000848,
3089 
3090  /// impact angle: Describes the angle between the laser beam and the sample target.
3091  MS_impact_angle = 1000849,
3092 
3093  /// gas laser: Laser which is powered by a gaseous medium.
3094  MS_gas_laser = 1000850,
3095 
3096  /// solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host with ions that provide the required energy states.
3098 
3099  /// dye-laser: Dye lasers use an organic dye as the gain medium.
3100  MS_dye_laser = 1000852,
3101 
3102  /// free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which move freely through a magnetic structure, hence the term.
3104 
3105  /// LTQ XL: Thermo Scientific LTQ XL MS.
3106  MS_LTQ_XL = 1000854,
3107 
3108  /// LTQ Velos: Thermo Scientific LTQ Velos MS.
3109  MS_LTQ_Velos = 1000855,
3110 
3111  /// LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
3112  MS_LTQ_Velos_ETD = 1000856,
3113 
3114  /// run attribute: Properties of the described run.
3115  MS_run_attribute = 1000857,
3116 
3117  /// fraction identifier: Identier string that describes the sample fraction. This identifier should contain the fraction number(s) or similar information.
3119 
3120  /// molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of the compound that can participate in a chemical reaction.
3121  MS_molecule = 1000859,
3122 
3123  /// peptide: A compound of low molecular weight that is composed of two or more amino acids.
3124  MS_peptide = 1000860,
3125 
3126  /// chemical compound attribute: A describable property of a chemical compound.
3128 
3129  /// isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric field.
3131 
3132  /// pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an electric field.
3134 
3135  /// predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3137 
3138  /// predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would not migrate in an electric field, as predicted by a software algorithm.
3140 
3141  /// chemical compound formula: A combination of symbols used to express the chemical composition of a compound.
3143 
3144  /// empirical formula: A chemical formula which expresses the proportions of the elements present in a substance.
3146 
3147  /// molecular formula: A chemical compound formula expressing the number of atoms of each element present in a compound, without indicating how they are linked.
3149 
3150  /// structural formula: A chemical formula showing the number of atoms of each element in a molecule, their spatial arrangement, and their linkage to each other.
3152 
3153  /// SMILES string: The simplified molecular input line entry specification or SMILES is a specification for unambiguously describing the structure of a chemical compound using a short ASCII string.
3154  MS_SMILES_string = 1000868,
3155 
3156  /// collision gas pressure: The gas pressure of the collision gas used for collisional excitation.
3158 
3159  /// 4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
3161 
3162  /// SRM software: Software used to predict, select, or optimize transitions or analyze the results of selected reaction monitoring runs.
3163  MS_SRM_software = 1000871,
3164 
3165  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3166  MS_MaRiMba = 1000872,
3167 
3168  /// peptide attribute calculation software: Software used to predict or calculate numerical attributes of peptides.
3170 
3171  /// SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on their sequence.
3172  MS_SSRCalc = 1000874,
3173 
3174  /// declustering potential: Potential difference between the orifice and the skimmer in volts.
3176 
3177  /// cone voltage: Potential difference between the sampling cone/orifice in volts.
3178  MS_cone_voltage = 1000876,
3179 
3180  /// tube lens voltage: Potential difference setting of the tube lens in volts.
3182 
3183  /// external reference identifier: An identifier/accession number to an external reference database.
3185 
3186  /// PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
3188 
3189  /// interchannel delay: The duration of intervals between scanning, during which the instrument configuration is switched.
3191 
3192  /// chemical compound: A substance formed by chemical union of two or more elements or ingredients in definite proportion by weight.
3194 
3195  /// protein: A compound composed of one or more chains of amino acids in a specific order determined by the base sequence of nucleotides in the DNA coding for the protein.
3196  MS_protein = 1000882,
3197 
3198  /// protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
3200 
3201  /// protein attribute: An nonphysical attribute describing a specific protein.
3203 
3204  /// protein accession: Accession number for a specific protein in a database.
3206 
3207  /// protein name: A long name describing the function of the protein.
3208  MS_protein_name = 1000886,
3209 
3210  /// peptide attribute: A nonphysical attribute that can be used to describe a peptide.
3212 
3213  /// unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide, without encoding any amino acid mass modifications that might be present.
3215 
3216  /// modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compose the peptide plus the encoding any amino acid modifications that are present.
3218 
3219  /// peptide labeling state: A state description of how a peptide might be isotopically or isobarically labelled.
3221 
3222  /// heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isotopes.
3224 
3225  /// unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3227 
3228  /// light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as \"light\" to distinguish from \"heavy\".
3230 
3231  /// peptide group label: An arbitrary string label used to mark a set of peptides that belong together in a set, whereby the members are differentiated by different isotopic labels. For example, the heavy and light forms of the same peptide will both be assigned the same peptide group label.
3233 
3234  /// retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column.
3236 
3237  /// local retention time: A time interval from the start of chromatography when an analyte exits an unspecified local chromatographic column and instrumental setup.
3239 
3240  /// normalized retention time: A time interval from the start of chromatography when an analyte exits a standardized reference chromatographic column and instrumental setup.
3242 
3243  /// predicted retention time: A time interval from the start of chromatography when an analyte exits a chromatographic column as predicted by a referenced software application.
3245 
3246  /// standard: Something, such as a practice or a product, that is widely recognized or employed, especially because of its excellence.
3247  MS_standard = 1000898,
3248 
3249  /// de facto standard: A practice or product that has become a standard not because it has been approved by a standards organization but because it is widely used and recognized by the industry as being standard.
3251 
3252  /// minimum information standard: A specification of a minimum amount of information needed to reproduce or fully interpret a scientific result.
3254 
3255  /// retention time normalization standard: A standard providing the retention times at which a set of reference compounds exit the reference chromatographic column.
3257 
3258  /// H-PINS retention time normalization standard: The de facto standard providing the retention times at which a set of halogenated reference peptides exit the reference chromatographic column.
3260 
3261  /// product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
3263 
3264  /// product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion minus the actual observed peak m/z.
3266 
3267  /// percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the magnitude of the base peak intensity multiplied by 100. The base peak is therefore 10000. This unit is common in normalized spectrum libraries.
3269 
3270  /// peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
3272 
3273  /// peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suitability for targeting. The most suitable peak is 1. The next most suitability peak is 2, etc. Suitability is algorithm and context dependant.
3275 
3276  /// transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3277  MS_transition = 1000908,
3278 
3279  /// reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in combination can be used to identify or quantify a specific ion, although not necessarily uniquely.
3281 
3282  /// transition validation method: The strategy used to validate that a transition is effective.
3284 
3285  /// transition optimized on specified instrument: The transition has been optimized by direct injection of the peptide into an instrument specified in a separate term, and the optimum voltages and fragmentation energies have been determined.
3287 
3288  /// transition validated with an MS/MS spectrum on specified instrument: The transition has been validated by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term.
3290 
3291  /// transition purported from an MS/MS spectrum on a different, specified instrument: The transition has been purported by obtaining an MS2 spectrum and demonstrating that the peak is detectable on the instrument specified with a separate term. However, the detecting instrument is of a different type (e.g. ion trap) than the instrument that the transition will eventually be used on (e.g. triple quad).
3293 
3294  /// transition predicted by informatic analysis: The transition has been predicted by informatics software without any direct spectral evidence.
3296 
3297  /// tab delimited text format: A file format that has two or more columns of tabular data where each column is separated by a TAB character.
3299 
3300  /// retention time window attribute: An attribute of a window in time about which a peptide might elute from the column.
3302 
3303  /// retention time window lower offset: The extent of the retention time window in time units below the target retention time. The lower and upper offsets may be asymmetric about the target time.
3305 
3306  /// retention time window upper offset: The extent of the retention time window in time units above the target retention time. The lower and upper offsets may be asymmetric about the target time.
3308 
3309  /// target list: A list of peptides or compounds and their expected m/z coordinates that can be used to cause a mass spectrometry to obtain spectra of those molecules specifically.
3310  MS_target_list = 1000918,
3311 
3312  /// target inclusion exclusion priority: A priority setting specifying whether included or excluded targets have priority over the other.
3314 
3315  /// includes supersede excludes: A priority setting specifying that included targets have priority over the excluded targets if there is a conflict.
3317 
3318  /// excludes supersede includes: A priority setting specifying that excluded targets have priority over the included targets if there is a conflict.
3320 
3321  /// Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the MacCoss lab at the University of Washington.
3322  MS_Skyline = 1000922,
3323 
3324  /// TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring experiments developed and distributed by the Institute for Systems Biology.
3325  MS_TIQAM = 1000923,
3326 
3327  /// MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on observed spectrum libraries developed and distributed by the Institute for Systems Biology.
3329 
3330  /// ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the results of selected reaction monitoring runs developed and distributed by the Institute for Systems Biology.
3331  MS_ATAQS = 1000925,
3332 
3333  /// product interpretation rank: The integer rank given an interpretation of an observed product ion. For example, if y8 is selected as the most likely interpretation of a peak, then it is assigned a rank of 1.
3335 
3336  /// ion injection time: The length of time spent filling an ion trapping device.
3338 
3339  /// calibration spectrum: A spectrum derived from a special calibration source, rather than from the primary injected sample. A calibration spectrum is typically derived from a substance that can be used to correct systematic shift in m/z for spectra of the primary inject sample.
3341 
3342  /// Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInteger end=xsd:nonNegativeInteger.
3344 
3345  /// Shimadzu Biotech database entity: Shimadzu Biotech format.
3347 
3348  /// QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
3349  MS_QTRAP_5500 = 1000931,
3350 
3351  /// TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
3353 
3354  /// protein modifications: Encoding of modifications of the protein sequence from the specified accession, written in PEFF notation.
3356 
3357  /// gene name: Name of the gene from which the protein is translated.
3358  MS_gene_name = 1000934,
3359 
3360  /// spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing the interpretation of spectra.
3362 
3363  /// SEQUEST:CleavesAt:
3365 
3366  /// SEQUEST:ViewCV: SEQUEST View Input Parameters.
3368 
3369  /// SEQUEST:OutputLines: Number of peptide results to show.
3371 
3372  /// SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
3374 
3375  /// de novo search: A de novo sequencing search (without database).
3377 
3378  /// search database details: Details about the database searched.
3380 
3381  /// database source: The organisation, project or laboratory from where the database is obtained (UniProt, NCBI, EBI, other).
3383 
3384  /// database name: The name of the search database (nr, SwissProt or est_human).
3385  MS_database_name = 1001013,
3386 
3387  /// database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search database from the search engine's point of view.
3389 
3390  /// database original uri: URI, from where the search database was originally downloaded.
3392 
3393  /// database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database.
3395 
3396  /// database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search database.
3398 
3399  /// database type: Database containing amino acid or nucleic acid sequences.
3400  MS_database_type = 1001018,
3401 
3402  /// database filtering: Was there filtering used on the database.
3404 
3405  /// DB filter taxonomy: A taxonomy filter was to the database search.
3407 
3408  /// DB filter on accession numbers: Filtering applied specifically by accession number pattern.
3410 
3411  /// DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range or above/below a threshold value.
3412  MS_DB_MW_filter = 1001022,
3413 
3414  /// DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI), specified as either a range or above/below a threshold value.
3415  MS_DB_PI_filter = 1001023,
3416 
3417  /// translation frame: The translated open reading frames from a nucleotide database considered in the search (range: 1-6).
3419 
3420  /// translation table: The translation table used to translate the nucleotides to amino acids.
3422 
3423  /// SEQUEST:NormalizeXCorrValues:
3425 
3426  /// DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern.
3428 
3429  /// SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched.
3431 
3432  /// number of sequences searched: The number of sequences (proteins / nucleotides) from the database search after filtering.
3434 
3435  /// number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum.
3437 
3438  /// spectral library search: A search using a library of spectra.
3440 
3441  /// SEQUEST:SequencePartialFilter:
3443 
3444  /// date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actual search run.
3446 
3447  /// search time taken: The time taken to complete the search in seconds.
3449 
3450  /// SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
3452 
3453  /// SEQUEST:Consensus: Specify depth as value of the CVParam.
3455 
3456  /// intermediate analysis format: Type of the source file, the mzIdentML was created from.
3458 
3459  /// SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
3461 
3462  /// SEQUEST:LimitTo: Specify \"number of dtas shown\" as value of the CVParam.
3464 
3465  /// cleavage agent details: Details of cleavage agent (enzyme).
3467 
3468  /// cleavage agent name: The name of the cleavage agent.
3470 
3471  /// SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation score.
3473 
3474  /// SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically calculated and the corresponding experimentally measured molecular mass M.
3476 
3477  /// SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
3479 
3480  /// SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion.
3482 
3483  /// SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability.
3485 
3486  /// multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead. Description of multiple enzyme digestion protocol, if any.
3488 
3489  /// SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino acid.
3491 
3492  /// SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference.
3494 
3495  /// modification parameters: Modification parameters for the search engine run.
3497 
3498  /// modification specificity rule: The specificity rules for the modifications applied by the search engine.
3500 
3501  /// tolerance on types: OBSOLETE: Tolerance on types.
3503 
3504  /// quality estimation by manual validation: The quality estimation was done manually.
3506 
3507  /// SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result 'Sp' of 'Rank/Sp' in the out file (peptide).
3509 
3510  /// quality estimation method details: Method for quality estimation (manually or with decoy database).
3512 
3513  /// neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
3515 
3516  /// Mascot MGF format: Mascot MGF file format.
3518 
3519  /// TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed granularity). TODO: add some child terms.
3521 
3522  /// ions series considered in search: The description of the DEPRECATED ion fragment series (including charges and neutral losses) that are considered by the search engine.
3524 
3525  /// SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
3527 
3528  /// SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
3530 
3531  /// SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
3533 
3534  /// SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
3536 
3537  /// SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result 'Sf'.
3539 
3540  /// database type amino acid: Database contains amino acid sequences.
3542 
3543  /// database type nucleotide: Database contains nucleic acid sequences.
3545 
3546  /// search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
3547  MS_search_type = 1001080,
3548 
3549  /// pmf search: A peptide mass fingerprint search.
3550  MS_pmf_search = 1001081,
3551 
3552  /// tag search: A sequence tag search.
3553  MS_tag_search = 1001082,
3554 
3555  /// ms-ms search: An MS2 search (with fragment ions).
3556  MS_ms_ms_search = 1001083,
3557 
3558  /// database nr: Non-redundant GenBank sequence database.
3559  MS_database_nr = 1001084,
3560 
3561  /// protein-level identification attribute: Protein level information.
3563 
3564  /// SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
3566 
3567  /// SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
3569 
3570  /// protein description: The protein description line from the sequence entry in the source database FASTA file.
3572 
3573  /// molecule taxonomy: The taxonomy of the resultant molecule from the search.
3575 
3576  /// taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated list of options: latin name, NCBI TaxID, common name, Swiss-Prot species ID (ex. RABIT from the full protein ID ALBU_RABIT).
3578 
3579  /// NoEnzyme:
3581 
3582  /// peptide sequence-level identification statistic: Identification confidence metric for a peptide.
3584 
3585  /// sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can be calculated).
3587 
3588  /// SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
3590 
3591  /// SEQUEST:ProcessAll:
3593 
3594  /// SEQUEST:TopPercentMostIntense: Specify \"percentage\" as value of the CVParam.
3596 
3597  /// distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a minimal confidence threshold.
3599 
3600  /// confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of 'confident' must be qualified elsewhere.
3602 
3603  /// confident peptide qualification: The point of this entry is to define what is meant by confident for the term Confident distinct peptide sequence and/or Confident peptides. Example 1 - metric=Paragon:Confidence value=95 sense=greater than Example 2 - metric=Mascot:Eval value=0.05 sense=less than.
3605 
3606  /// confident peptide sequence number: This counts the number of peptide sequences without regard to whether they are distinct. Multiple charges states and multiple modification states DO count as multiple peptides. The definition of 'confident' must be qualified elsewhere.
3608 
3609  /// protein group or subset relationship: Protein group or subset relationships.
3611 
3612  /// SEQUEST:Chromatogram:
3614 
3615  /// SEQUEST:InfoAndLog:
3617 
3618  /// database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
3620 
3621  /// peptide sequence-level identification attribute: Peptide level information.
3623 
3624  /// SEQUEST:TopNumber: Specify \"number\" as value of the CVParam.
3626 
3627  /// data stored in database: Source file for this mzIdentML was a data set in a database.
3629 
3630  /// param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side.
3631  MS_param__a_ion = 1001108,
3632 
3633  /// SEQUEST:CullTo: Specify cull string as value of the CVParam.
3635 
3636  /// SEQUEST:modeCV: SEQUEST Mode Input Parameters.
3638 
3639  /// SEQUEST:Full:
3640  MS_SEQUEST_Full = 1001111,
3641 
3642  /// n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it occurs in the protein. Use 'N-term' to denote if the peptide starts at the N terminus of the protein.
3644 
3645  /// c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it occurs in the protein. Use 'C-term' to denote if the peptide ends at the C terminus of the protein.
3647 
3648  /// retention time(s): Retention time of the spectrum from the source file.
3650 
3651  /// scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
3653 
3654  /// single protein identification statistic: Results specific for one protein as part of a protein ambiguity group (a result not valid for all the other proteins in the protein ambiguity group).
3656 
3657  /// theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modifications).
3659 
3660  /// param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side.
3661  MS_param__b_ion = 1001118,
3662 
3663  /// param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side.
3664  MS_param__c_ion = 1001119,
3665 
3666  /// SEQUEST:FormatAndLinks:
3668 
3669  /// number of matched peaks: The number of peaks that were matched as qualified by the ion series considered field. If a peak matches multiple ions then only 1 would be added the count.
3671 
3672  /// ions series considered: The ion series that were used during the calculation of the count (e.g. a, b, c, d, v, w, x, y, z, a-H2O, a-NH3, b-H2O, b-NH3, y-H2O, y-NH3, b-H20, b+, z-, z+1, z+2, b-H3PO4, y-H3PO4, immonium, internal ya, internal yb).
3674 
3675  /// number of peaks used: The number of peaks from the original peak list that are used to calculate the scores for a particular search engine. All ions that have the opportunity to match or be counted even if they don't.
3677 
3678  /// number of peaks submitted: The number of peaks from the original peaks listed that were submitted to the search engine.
3680 
3681  /// manual validation: Result of quality estimation: decision of a manual validation.
3683 
3684  /// SEQUEST:Fast:
3685  MS_SEQUEST_Fast = 1001126,
3686 
3687  /// peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this peptide.
3689 
3690  /// SEQUEST:selectCV: SEQUEST Select Input Parameters.
3692 
3693  /// quantification information: Quantification information.
3695 
3696  /// peptide raw area: Peptide raw area.
3698 
3699  /// error on peptide area: Error on peptide area.
3701 
3702  /// peptide ratio: Peptide ratio.
3703  MS_peptide_ratio = 1001132,
3704 
3705  /// error on peptide ratio: Error on peptide ratio.
3707 
3708  /// protein ratio: Protein ratio.
3709  MS_protein_ratio = 1001134,
3710 
3711  /// error on protein ratio: Error on protein ratio.
3713 
3714  /// p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
3716 
3717  /// absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample.
3719 
3720  /// error on absolute quantity: Error on absolute quantity.
3722 
3723  /// quantitation software name: Quantitation software name.
3725 
3726  /// quantitation software version: Quantitation software version.
3728 
3729  /// intensity of precursor ion: The intensity of the precursor ion.
3731 
3732  /// database IPI_human: International Protein Index database for Homo sapiens sequences.
3734 
3735  /// PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores.
3737 
3738  /// SEQUEST:SelectDefault:
3740 
3741  /// SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
3743 
3744  /// param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammonia.
3746 
3747  /// protein ambiguity group result details:
3749 
3750  /// param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
3752 
3753  /// param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammonia.
3755 
3756  /// param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
3758 
3759  /// param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammonia.
3761 
3762  /// param: y ion-H2O DEPRECATED:
3764 
3765  /// search engine specific score: Search engine specific scores.
3767 
3768  /// SEQUEST:probability: The SEQUEST result 'Probability'.
3770 
3771  /// SEQUEST:xcorr: The SEQUEST result 'XCorr'.
3772  MS_SEQUEST_xcorr = 1001155,
3773 
3774  /// SEQUEST:deltacn: The SEQUEST result 'DeltaCn'.
3776 
3777  /// SEQUEST:sp: The SEQUEST result 'Sp' (protein).
3778  MS_SEQUEST_sp = 1001157,
3779 
3780  /// SEQUEST:Uniq:
3781  MS_SEQUEST_Uniq = 1001158,
3782 
3783  /// SEQUEST:expectation value: The SEQUEST result 'Expectation value'.
3785 
3786  /// SEQUEST:sf: The SEQUEST result 'Sf'.
3787  MS_SEQUEST_sf = 1001160,
3788 
3789  /// SEQUEST:matched ions: The SEQUEST result 'Matched Ions'.
3791 
3792  /// SEQUEST:total ions: The SEQUEST result 'Total Ions'.
3794 
3795  /// SEQUEST:consensus score: The SEQUEST result 'Consensus Score'.
3797 
3798  /// Paragon:unused protscore: The Paragon result 'Unused ProtScore'.
3800 
3801  /// Paragon:total protscore: The Paragon result 'Total ProtScore'.
3803 
3804  /// Paragon:score: The Paragon result 'Score'.
3805  MS_Paragon_score = 1001166,
3806 
3807  /// Paragon:confidence: The Paragon result 'Confidence'.
3809 
3810  /// Paragon:expression error factor: The Paragon result 'Expression Error Factor'.
3812 
3813  /// Paragon:expression change p-value: The Paragon result 'Expression change P-value'.
3815 
3816  /// Paragon:contrib: The Paragon result 'Contrib'.
3818 
3819  /// Mascot:score: The Mascot result 'Score'.
3820  MS_Mascot_score = 1001171,
3821 
3822  /// Mascot:expectation value: The Mascot result 'expectation value'.
3824 
3825  /// Mascot:matched ions: The Mascot result 'Matched ions'.
3827 
3828  /// Mascot:total ions: The Mascot result 'Total ions'.
3830 
3831  /// peptide shared in multiple proteins: A peptide matching multiple proteins.
3833 
3834  /// (?<=[KR])(?!P): Regular expression for Trypsin.
3836 
3837  /// number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the number of molecules (e.g. peptides for proteomics) considered for a particular search.
3839 
3840  /// database EST: Expressed sequence tag nucleotide sequence database.
3841  MS_database_EST = 1001178,
3842 
3843  /// Cleavage agent regular expression: Regular expressions for cleavage enzymes.
3845 
3846  /// search statistics: The details of the actual run of the search.
3848 
3849  /// modification specificity peptide N-term: As parameter for search engine: apply the modification only at the N-terminus of a peptide.
3851 
3852  /// modification specificity peptide C-term: As parameter for search engine: apply the modification only at the C-terminus of a peptide.
3854 
3855  /// p-value: Quality estimation by p-value.
3857 
3858  /// Expect value: Result of quality estimation: Expect value.
3859  MS_Expect_value = 1001192,
3860 
3861  /// confidence score: Result of quality estimation: confidence score.
3863 
3864  /// quality estimation with decoy database: Quality estimation by decoy database.
3866 
3867  /// decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order.
3869 
3870  /// decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the original protein mass).
3872 
3873  /// DB composition target+decoy: Decoy database composition: database contains original (target) and decoy entries.
3875 
3876  /// protein identification confidence metric: Identification confidence metric for a protein.
3878 
3879  /// Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
3881 
3882  /// SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
3884 
3885  /// DB MW filter maximum: Maximum value of molecular weight filter.
3887 
3888  /// DB MW filter minimum: Minimum value of molecular weight filter.
3890 
3891  /// DB PI filter maximum: Maximum value of isoelectric point filter.
3893 
3894  /// DB PI filter minimum: Minimum value of isoelectric point filter.
3896 
3897  /// Mascot: The name of the Mascot search engine.
3898  MS_Mascot = 1001207,
3899 
3900  /// SEQUEST: The name of the SEQUEST search engine.
3901  MS_SEQUEST = 1001208,
3902 
3903  /// Phenyx: The name of the Phenyx search engine.
3904  MS_Phenyx = 1001209,
3905 
3906  /// mass type settings: The type of mass difference value to be considered by the search engine (monoisotopic or average).
3908 
3909  /// parent mass type mono: Mass type setting for parent mass was monoisotopic.
3911 
3912  /// parent mass type average: Mass type setting for parent mass was average isotopic.
3914 
3915  /// search result details: OBSOLETE: Scores and global result characteristics.
3917 
3918  /// protein-level global FDR: Estimation of the global false discovery rate of proteins.
3920 
3921  /// SEQUEST:PeptideSp: The SEQUEST result 'Sp' in out file (peptide).
3923 
3924  /// SEQUEST:PeptideRankSp: The SEQUEST result 'Sp' of 'Rank/Sp' in out file (peptide). Also called 'rsp'.
3926 
3927  /// SEQUEST:PeptideNumber: The SEQUEST result '#' in out file (peptide).
3929 
3930  /// SEQUEST:PeptideIdnumber: The SEQUEST result 'Id#' in out file (peptide).
3932 
3933  /// frag: y ion: Fragmentation information, type of product: y ion.
3934  MS_frag__y_ion = 1001220,
3935 
3936  /// product ion attribute: Fragmentation information like ion types.
3938 
3939  /// frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
3941 
3942  /// frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
3944 
3945  /// frag: b ion: Fragmentation information, type of product: b ion.
3946  MS_frag__b_ion = 1001224,
3947 
3948  /// product ion m/z: The m/z of the product ion.
3950 
3951  /// fragment ion m/z (product ion m/z): The m/z of the product ion.
3953 
3954  /// product ion intensity: The intensity of a single product ion.
3956 
3957  /// fragment ion intensity (product ion intensity): The intensity of a single product ion.
3959 
3960  /// product ion m/z error: The product ion m/z error.
3962 
3963  /// frag: x ion: Fragmentation information, type of product: x ion.
3964  MS_frag__x_ion = 1001228,
3965 
3966  /// frag: a ion: Fragmentation information, type of product: a ion.
3967  MS_frag__a_ion = 1001229,
3968 
3969  /// frag: z ion: Fragmentation information, type of product: z ion.
3970  MS_frag__z_ion = 1001230,
3971 
3972  /// frag: c ion: Fragmentation information, type of product: c ion.
3973  MS_frag__c_ion = 1001231,
3974 
3975  /// frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia.
3977 
3978  /// frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia.
3980 
3981  /// frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
3983 
3984  /// frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia.
3986 
3987  /// frag: d ion: Fragmentation information, type of product: d ion.
3988  MS_frag__d_ion = 1001236,
3989 
3990  /// frag: v ion: Fragmentation information, type of product: v ion.
3991  MS_frag__v_ion = 1001237,
3992 
3993  /// frag: w ion: Fragmentation information, type of product: w ion.
3994  MS_frag__w_ion = 1001238,
3995 
3996  /// frag: immonium ion: Fragmentation information, type of product: immonium ion.
3998 
3999  /// non-identified ion: Non-identified ion.
4001 
4002  /// co-eluting ion: Co-eluting ion.
4004 
4005  /// SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files.
4007 
4008  /// SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
4010 
4011  /// PerSeptive PKS format: PerSeptive peak list file format.
4013 
4014  /// SCIEX API III format: PE SCIEX peak list file format.
4016 
4017  /// Bruker XML format: Bruker data exchange XML format.
4019 
4020  /// search input details: Details describing the search input.
4022 
4023  /// local FDR: Result of quality estimation: the local FDR at the current position of a sorted list.
4024  MS_local_FDR = 1001250,
4025 
4026  /// Trypsin: Enzyme trypsin.
4027  MS_Trypsin = 1001251,
4028 
4029  /// DB source EBI: Database source EBI.
4030  MS_DB_source_EBI = 1001252,
4031 
4032  /// DB source NCBI: Database source NCBI.
4034 
4035  /// DB source UniProt: Database source UniProt.
4037 
4038  /// fragment mass type average: Mass type setting for fragment mass was average isotopic.
4040 
4041  /// fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
4043 
4044  /// param: v ion: Parameter information, type of product: side chain loss v ion.
4045  MS_param__v_ion = 1001257,
4046 
4047  /// param: d ion: Parameter information, type of product: side chain loss d ion.
4048  MS_param__d_ion = 1001258,
4049 
4050  /// param: immonium ion: Parameter information, type of product: immonium ion.
4052 
4053  /// param: w ion: Parameter information, type of product: side chain loss w ion.
4054  MS_param__w_ion = 1001260,
4055 
4056  /// param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side.
4057  MS_param__x_ion = 1001261,
4058 
4059  /// param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side.
4060  MS_param__y_ion = 1001262,
4061 
4062  /// param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side.
4063  MS_param__z_ion = 1001263,
4064 
4065  /// role type: Role of a Person or Organization.
4066  MS_role_type = 1001266,
4067 
4068  /// software vendor: Software vendor role.
4070 
4071  /// programmer: Programmer role.
4072  MS_programmer = 1001268,
4073 
4074  /// instrument vendor: Instrument vendor role.
4076 
4077  /// lab personnel: Lab personnel role.
4078  MS_lab_personnel = 1001270,
4079 
4080  /// researcher: Researcher role.
4081  MS_researcher = 1001271,
4082 
4083  /// (?<=R)(?!P): Regular expression for Arg-C.
4084  MS_____R____P_ = 1001272,
4085 
4086  /// (?=[BD]): Regular expression for Asp-N.
4087  MS_____BD__ = 1001273,
4088 
4089  /// (?=[DE]): Regular expression for Asp-N-ambic.
4090  MS_____DE__ = 1001274,
4091 
4092  /// ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
4094 
4095  /// ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
4097 
4098  /// decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
4100 
4101  /// decoy DB derived from: The name of the database, the search database was derived from.
4103 
4104  /// database IPI_mouse: International Protein Index database for Mus musculus sequences.
4106 
4107  /// database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
4109 
4110  /// database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
4112 
4113  /// database IPI_chicken: International Protein Index database for Gallus gallus sequences.
4115 
4116  /// database IPI_cow: International Protein Index database for Bos taurus sequences.
4118 
4119  /// database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences.
4121 
4122  /// decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
4124 
4125  /// decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegicus.
4127 
4128  /// decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus.
4130 
4131  /// decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabidopsis thaliana.
4133 
4134  /// decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database.
4136 
4137  /// decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rerio.
4139 
4140  /// decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database.
4142 
4143  /// decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gallus.
4145 
4146  /// decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus.
4148 
4149  /// decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens.
4151 
4152  /// protein rank: The rank of the protein in a list sorted by the search engine.
4153  MS_protein_rank = 1001301,
4154 
4155  /// search engine specific input parameter: Search engine specific input parameters.
4157 
4158  /// Arg-C: Endoproteinase Arg-C.
4159  MS_Arg_C = 1001303,
4160 
4161  /// Clostripain (Arg-C): Endoproteinase Arg-C.
4163 
4164  /// Asp-N: Endoproteinase Asp-N.
4165  MS_Asp_N = 1001304,
4166 
4167  /// Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
4168  MS_Asp_N_ambic = 1001305,
4169 
4170  /// Chymotrypsin: Enzyme chymotrypsin.
4171  MS_Chymotrypsin = 1001306,
4172 
4173  /// CNBr: Cyanogen bromide.
4174  MS_CNBr = 1001307,
4175 
4176  /// Formic_acid: Formic acid.
4177  MS_Formic_acid = 1001308,
4178 
4179  /// Lys-C: Endoproteinase Lys-C.
4180  MS_Lys_C = 1001309,
4181 
4182  /// Lys-C/P: Proteinase Lys-C/P.
4183  MS_Lys_C_P = 1001310,
4184 
4185  /// PepsinA: PepsinA proteinase.
4186  MS_PepsinA = 1001311,
4187 
4188  /// TrypChymo: Cleavage agent TrypChymo.
4189  MS_TrypChymo = 1001312,
4190 
4191  /// Trypsin/P: Cleavage agent Trypsin/P.
4192  MS_Trypsin_P = 1001313,
4193 
4194  /// V8-DE: Cleavage agent V8-DE.
4195  MS_V8_DE = 1001314,
4196 
4197  /// V8-E: Cleavage agent V8-E.
4198  MS_V8_E = 1001315,
4199 
4200  /// Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be considered statistically significant (default 0.05).
4202 
4203  /// Mascot:MaxProteinHits: The number of protein hits to display in the report. If 'Auto', all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
4205 
4206  /// Mascot:ProteinScoringMethod: Mascot protein scoring method; either 'Standard' or 'MudPIT'.
4208 
4209  /// Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1, then peptide matches whose expect value exceeds the thresholds are suppressed; if at least 1, then peptide matches whose ion score is below the threshold are suppressed.
4211 
4212  /// Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins. Otherwise they are suppressed.
4214 
4215  /// Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and subsumable proteins. Otherwise they are suppressed.
4217 
4218  /// Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true, a peptide match must be 'bold red' to be included in the report; bold red means the peptide is a top ranking match in a query and appears for the first time (in linear order) in the list of protein hits.
4220 
4221  /// Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and Unigene clustering is enabled. Otherwise UniGene clustering is not in use.
4223 
4224  /// Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide matches from the second pass are included in search results. Otherwise no error tolerant peptide matches are included.
4226 
4227  /// Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated decoy database and the reported peptide matches and protein hits come from the decoy database. Otherwise peptide matches and protein hits come from the original database.
4229 
4230  /// add_others: OBSOLETE.
4232 
4233  /// OMSSA:evalue: OMSSA E-value.
4234  MS_OMSSA_evalue = 1001328,
4235 
4236  /// OMSSA:pvalue: OMSSA p-value.
4237  MS_OMSSA_pvalue = 1001329,
4238 
4239  /// X!Tandem:expect: The X!Tandem expectation value.
4241 
4242  /// X!Tandem:hyperscore: The X!Tandem hyperscore.
4244 
4245  /// (?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
4247 
4248  /// (?<=M): Regular expression for CNBr.
4249  MS_____M_ = 1001333,
4250 
4251  /// ((?<=D))|((?=D)): Regular expression for formic acid.
4253 
4254  /// (?<=K)(?!P): Regular expression for Lys-C.
4255  MS_____K____P_ = 1001335,
4256 
4257  /// (?<=K): Regular expression for Lys-C/P.
4258  MS_____K_ = 1001336,
4259 
4260  /// (?<=[FL]): Regular expression for PepsinA.
4261  MS______FL__ = 1001337,
4262 
4263  /// (?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
4265 
4266  /// (?<=[KR]): Regular expression for Trypsin/P.
4267  MS______KR__ = 1001339,
4268 
4269  /// (?<=[BDEZ])(?!P): Regular expression for V8-DE.
4271 
4272  /// (?<=[EZ])(?!P): Regular expression for V8-E.
4274 
4275  /// database sequence details: Details about a single database sequence.
4277 
4278  /// NA sequence: The sequence is a nucleic acid sequence.
4279  MS_NA_sequence = 1001343,
4280 
4281  /// AA sequence: The sequence is a amino acid sequence.
4282  MS_AA_sequence = 1001344,
4283 
4284  /// mass table source: Children of this term specify the source of the mass table used.
4286 
4287  /// AAIndex mass table: The masses used in the mass table are taken from AAIndex.
4289 
4290  /// database file formats: The children of this term define file formats of the sequence database used.
4292 
4293  /// FASTA format: The sequence database was stored in the FASTA format.
4294  MS_FASTA_format = 1001348,
4295 
4296  /// ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format.
4297  MS_ASN_1 = 1001349,
4298 
4299  /// NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
4300  MS_NCBI___p_ = 1001350,
4301 
4302  /// clustal aln: ClustalW ALN (multiple alignment) format.
4303  MS_clustal_aln = 1001351,
4304 
4305  /// embl em: EMBL entry format.
4306  MS_embl_em = 1001352,
4307 
4308  /// NBRF PIR: The NBRF PIR was used as format.
4309  MS_NBRF_PIR = 1001353,
4310 
4311  /// mass table options: Root node for options for the mass table used.
4313 
4314  /// peptide descriptions: Descriptions of peptides.
4316 
4317  /// spectrum descriptions: Descriptions of the input spectra.
4319 
4320  /// spectrum quality descriptions: Description of the quality of the input spectrum.
4322 
4323  /// msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
4325 
4326  /// ambiguous residues: Children of this term describe ambiguous residues.
4328 
4329  /// alternate single letter codes: List of standard residue one letter codes which are used to replace a non-standard.
4331 
4332  /// alternate mass: List of masses a non-standard letter code is replaced with.
4334 
4335  /// number of unmatched peaks: The number of unmatched peaks.
4337 
4338  /// peptide unique to one protein: A peptide matching only one.
4340 
4341  /// peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
4343 
4344  /// frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
4346 
4347  /// frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
4349 
4350  /// frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
4351  MS_frag__z_1_ion = 1001367,
4352 
4353  /// frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
4354  MS_frag__z_2_ion = 1001368,
4355 
4356  /// text format: Simple text file format of \"m/z [intensity]\" values for a PMF (or single MS2) search.
4357  MS_text_format = 1001369,
4358 
4359  /// Mascot:homology threshold: The Mascot result 'homology threshold'.
4361 
4362  /// Mascot:identity threshold: The Mascot result 'identity threshold'.
4364 
4365  /// SEQUEST:Sequences:
4367 
4368  /// SEQUEST:TIC: SEQUEST total ion current.
4369  MS_SEQUEST_TIC = 1001373,
4370 
4371  /// SEQUEST:Sum:
4372  MS_SEQUEST_Sum = 1001374,
4373 
4374  /// Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
4376 
4377  /// Phenyx:Scoring Model: The selected scoring model in Phenyx.
4379 
4380  /// Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
4382 
4383  /// Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state is to be considered as correct.
4385 
4386  /// Phenyx:Turbo: The turbo mode parameter in Phenyx.
4387  MS_Phenyx_Turbo = 1001379,
4388 
4389  /// Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of Phenyx.
4391 
4392  /// Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
4394 
4395  /// Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
4397 
4398  /// Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identification in Phenyx.
4400 
4401  /// Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identification in Phenyx.
4403 
4404  /// Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identification in Phenyx.
4406 
4407  /// Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in the list of identified proteins in Phenyx.
4409 
4410  /// Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorithm is to be used.
4412 
4413  /// Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
4414  MS_Phenyx_AC = 1001388,
4415 
4416  /// Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
4417  MS_Phenyx_ID = 1001389,
4418 
4419  /// Phenyx:Score: The protein score of a protein match in Phenyx.
4420  MS_Phenyx_Score = 1001390,
4421 
4422  /// Phenyx:Peptides1: First number of phenyx result \"#Peptides\".
4424 
4425  /// Phenyx:Peptides2: Second number of phenyx result \"#Peptides\".
4427 
4428  /// Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
4429  MS_Phenyx_Auto = 1001393,
4430 
4431  /// Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
4432  MS_Phenyx_User = 1001394,
4433 
4434  /// Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
4436 
4437  /// Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
4439 
4440  /// Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
4442 
4443  /// Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptide sequence in Phenyx.
4444  MS_Phenyx_Modif = 1001398,
4445 
4446  /// OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
4448 
4449  /// OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
4451 
4452  /// X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
4454 
4455  /// spectrum identification result details: This subsection describes terms which can describe details of spectrum identification results.
4457 
4458  /// param: internal yb ion: Parameter information, type of product: internal yb ion.
4460 
4461  /// param: internal ya ion: Parameter information, type of product: internal ya ion.
4463 
4464  /// param: z+1 ion: Parameter information, type of product: z+1 ion.
4466 
4467  /// param: z+2 ion: Parameter information, type of product: z+2 ion.
4469 
4470  /// translation start codons: The translation start codons used to translate the nucleotides to amino acids.
4472 
4473  /// search tolerance specification: Specification of the search tolerance.
4475 
4476  /// search tolerance plus value:
4478 
4479  /// search tolerance minus value:
4481 
4482  /// MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute from an MGF input file.
4484 
4485  /// MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw scans attribute from an MGF input file.
4487 
4488  /// spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from different input file formats, e.g. MGF TITLE.
4490 
4491  /// SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
4492  MS_SpectraST_dot = 1001417,
4493 
4494  /// SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks.
4496 
4497  /// SpectraST:discriminant score F: SpectraST spectrum score.
4499 
4500  /// SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up.
4502 
4503  /// pepXML format: Source file for this mzIdentML was in a pepXML file format.
4504  MS_pepXML_format = 1001421,
4505 
4506  /// protXML format: Source file for this mzIdentML was in protXML file format.
4508 
4509  /// translation table description: A URL that describes the translation table used to translate the nucleotides to amino acids.
4511 
4512  /// ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
4514 
4515  /// ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated.
4517 
4518  /// ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included.
4520 
4521  /// ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider.
4523 
4524  /// ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
4526 
4527  /// ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider.
4529 
4530  /// ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinExtractor meta score.
4532 
4533  /// ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Mascot scoring for calculation of the ProteinExtractor meta score.
4535 
4536  /// ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide above this Mascot score threshold in ProteinExtractor meta score calculation.
4538 
4539  /// ProteinExtractor:MascotUseIdentityScore:
4541 
4542  /// ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4544 
4545  /// ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the ProteinExtractor meta score.
4547 
4548  /// ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in SEQUEST scoring for calculation of the ProteinExtractor meta score.
4550 
4551  /// ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide above this SEQUEST score threshold in ProteinExtractor meta score calculation.
4553 
4554  /// ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4556 
4557  /// ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4559 
4560  /// ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in ProteinSolver scoring for calculation of the ProteinExtractor meta score.
4562 
4563  /// ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one peptide above this ProteinSolver score threshold in ProteinExtractor meta score calculation.
4565 
4566  /// ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4568 
4569  /// ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinExtractor meta score.
4571 
4572  /// ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold are taken into account in Phenyx scoring for calculation of the ProteinExtractor meta score.
4574 
4575  /// ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide above this Phenyx score threshold in ProteinExtractor meta score calculation.
4577 
4578  /// ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the search engine specific protein lists into the global protein list of ProteinExtractor.
4580 
4581  /// prot:FDR threshold: False-discovery rate threshold for proteins.
4583 
4584  /// pep:FDR threshold: False-discovery rate threshold for peptides.
4586 
4587  /// OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
4589 
4590  /// decoy DB details: Details of decoy generation and database structure.
4592 
4593  /// decoy DB generation algorithm: Name of algorithm used for decoy generation.
4595 
4596  /// decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order.
4598 
4599  /// DB composition only decoy: Decoy database composition: database contains only decoy entries.
4601 
4602  /// quality estimation with implicite decoy sequences: Decoy entries are generated during the search, not explicitly stored in a database (like Mascot Decoy).
4604 
4605  /// acquisition software: Acquisition software.
4607 
4608  /// analysis software: Analysis software.
4610 
4611  /// data processing software: Data processing software.
4613 
4614  /// spectrum generation information: Vocabularies describing the spectrum generation information.
4616 
4617  /// file format: Format of data files.
4618  MS_file_format = 1001459,
4619 
4620  /// unknown modification: This term should be given if the modification was unknown.
4622 
4623  /// greylag: Greylag identification software.
4624  MS_greylag = 1001461,
4625 
4626  /// PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format.
4627  MS_PEFF_format = 1001462,
4628 
4629  /// Phenyx XML format: Phenyx open XML file format.
4631 
4632  /// DTASelect format: DTASelect file format.
4634 
4635  /// MS2 format: MS2 file format for MS2 spectral data.
4636  MS_MS2_format = 1001466,
4637 
4638  /// taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens.
4640 
4641  /// taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4643 
4644  /// taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4646 
4647  /// taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
4649 
4650  /// peptide modification details: The children of this term can be used to describe modifications.
4652 
4653  /// selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4655 
4656  /// SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored ion at each time point.
4658 
4659  /// selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4661 
4662  /// SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a selectively monitored reaction at each time point.
4664 
4665  /// consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4667 
4668  /// CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an array of the measurements of a series of monitored reactions at each time point.
4670 
4671  /// OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
4672  MS_OMSSA = 1001475,
4673 
4674  /// X!Tandem: X!Tandem was used to analyze the spectra.
4675  MS_X_Tandem = 1001476,
4676 
4677  /// SpectraST: SpectraST was used to analyze the spectra.
4678  MS_SpectraST = 1001477,
4679 
4680  /// Mascot Parser: Mascot Parser was used to analyze the spectra.
4681  MS_Mascot_Parser = 1001478,
4682 
4683  /// null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a single null (0) byte.
4685 
4686  /// SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:string spectrum=xsd:nonNegativeInteger.
4688 
4689  /// SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database.
4691 
4692  /// 5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
4693  MS_5800_TOF_TOF = 1001482,
4694 
4695  /// SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisition and analysis.
4697 
4698  /// intensity normalization: Normalization of data point intensities.
4700 
4701  /// m/z calibration: Calibration of data point m/z positions.
4703 
4704  /// data filtering: Filtering out part of the data.
4706 
4707  /// ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker's ProteinScape.
4709 
4710  /// Mascot Distiller: Mascot Distiller.
4712 
4713  /// Mascot Integra: Mascot Integra.
4715 
4716  /// Percolator: Percolator.
4717  MS_Percolator = 1001490,
4718 
4719  /// percolator:Q value: Percolator:Q value.
4721 
4722  /// percolator:score: Percolator:score.
4724 
4725  /// percolator:PEP: Posterior error probability.
4727 
4728  /// no threshold: In case no threshold was used.
4729  MS_no_threshold = 1001494,
4730 
4731  /// ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape database.
4733 
4734  /// ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database.
4736 
4737  /// ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
4739 
4740  /// Profound:z value: The Profound z value.
4742 
4743  /// Profound:Cluster: The Profound cluster score.
4745 
4746  /// Profound:ClusterRank: The Profound cluster rank.
4748 
4749  /// MSFit:Mowse score: The MSFit Mowse score.
4751 
4752  /// Sonar:Score: The Sonar score.
4753  MS_Sonar_Score = 1001502,
4754 
4755  /// ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
4757 
4758  /// ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
4760 
4761  /// ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calculated by ProteinScape.
4763 
4764  /// ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SEQUEST scores.
4766 
4767  /// ProteinExtractor:Score: The score calculated by ProteinExtractor.
4769 
4770  /// Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
4772 
4773  /// Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains raw data acquired by an Agilent mass spectrometer.
4775 
4776  /// TSQ Vantage: TSQ Vantage.
4777  MS_TSQ_Vantage = 1001510,
4778 
4779  /// Sequence database filter types: Filter types which are used to filter a sequence database.
4781 
4782  /// Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
4784 
4785  /// DB sequence filter pattern: DB sequence filter pattern.
4787 
4788  /// DB accession filter string: DB accession filter string.
4790 
4791  /// frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
4793 
4794  /// frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
4796 
4797  /// frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
4799 
4800  /// frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
4802 
4803  /// frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
4805 
4806  /// frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
4808 
4809  /// frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water.
4811 
4812  /// frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia.
4814 
4815  /// frag: precursor ion: Fragmentation information, type of product: precursor ion.
4817 
4818  /// fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4820 
4821  /// precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion.
4823 
4824  /// spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
4826 
4827  /// Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
4829 
4830  /// Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
4832 
4833  /// spectra data details: Child-terms contain information to map the results back to spectra.
4835 
4836  /// mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
4838 
4839  /// spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
4841 
4842  /// spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
4844 
4845  /// Bruker Daltonics esquire series: Bruker Daltonics' esquire series.
4847 
4848  /// Bruker Daltonics flex series: Bruker Daltonics' flex series.
4850 
4851  /// Bruker Daltonics BioTOF series: Bruker Daltonics' BioTOF series.
4853 
4854  /// Bruker Daltonics micrOTOF series: Bruker Daltonics' micrOTOF series.
4856 
4857  /// BioTOF: Bruker Daltonics' BioTOF: ESI TOF.
4858  MS_BioTOF = 1001537,
4859 
4860  /// BioTOF III: Bruker Daltonics' BioTOF III: ESI TOF.
4861  MS_BioTOF_III = 1001538,
4862 
4863  /// UltroTOF-Q: Bruker Daltonics' UltroTOF-Q: ESI Q-TOF (MALDI optional).
4864  MS_UltroTOF_Q = 1001539,
4865 
4866  /// micrOTOF II: Bruker Daltonics' micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
4867  MS_micrOTOF_II = 1001540,
4868 
4869  /// maXis: Bruker Daltonics' maXis: ESI Q-TOF, Nanospray, APCI, APPI.
4870  MS_maXis = 1001541,
4871 
4872  /// amaZon ETD: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
4873  MS_amaZon_ETD = 1001542,
4874 
4875  /// microflex LRF: Bruker Daltonics' microflex LRF: MALDI TOF.
4876  MS_microflex_LRF = 1001543,
4877 
4878  /// ultrafleXtreme: Bruker Daltonics' ultrafleXtreme: MALDI TOF.
4880 
4881  /// Bruker Daltonics amaZon series: Bruker Daltonics' amaZon series.
4883 
4884  /// amaZon X: Bruker Daltonics' amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4885  MS_amaZon_X = 1001546,
4886 
4887  /// Bruker Daltonics maXis series: Bruker Daltonics' maXis series.
4889 
4890  /// Bruker Daltonics solarix series: Bruker Daltonics' solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
4892 
4893  /// solariX: Bruker Daltonics' solariX: ESI, MALDI, Qh-FT_ICR.
4894  MS_solariX = 1001549,
4895 
4896  /// microflex II: Bruker Daltonics' microflex II: MALDI TOF.
4897  MS_microflex_II = 1001550,
4898 
4899  /// autoflex II TOF/TOF: Bruker Daltonics' autoflex II TOF/TOF: MALDI TOF.
4901 
4902  /// autoflex III TOF/TOF smartbeam: Bruker Daltonics' autoflex III TOF/TOF smartbeam: MALDI TOF.
4904 
4905  /// autoflex: Bruker Daltonics' autoflex: MALDI TOF.
4906  MS_autoflex = 1001555,
4907 
4908  /// Bruker Daltonics apex series: Bruker Daltonics' apex series.
4910 
4911  /// Shimadzu Corporation software: Shimadzu Corporation software.
4913 
4914  /// MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
4916 
4917  /// SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
4919 
4920  /// SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export format.
4922 
4923  /// Scaffold: Scaffold analysis software.
4924  MS_Scaffold = 1001561,
4925 
4926  /// Scaffold nativeID format: Scaffold native ID format.
4928 
4929  /// SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
4931 
4932  /// Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format.
4934 
4935  /// IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
4937 
4938  /// ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format.
4940 
4941  /// SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format.
4943 
4944  /// Scaffold:Peptide Probability: Scaffold peptide probability score.
4946 
4947  /// IdentityE Score: Waters IdentityE peptide score.
4949 
4950  /// ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
4952 
4953  /// ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
4955 
4956  /// SpectrumMill:Score: Spectrum mill peptide score.
4958 
4959  /// SpectrumMill:SPI: SpectrumMill SPI score (%).
4961 
4962  /// report only spectra assigned to identified proteins: Flag indicating to report only the spectra assigned to identified proteins.
4964 
4965  /// Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted.
4967 
4968  /// Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted.
4970 
4971  /// Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for protein scoring.
4973 
4974  /// minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be accepted.
4976 
4977  /// Scaffold:Protein Probability: Scaffold protein probability score.
4979 
4980  /// SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
4982 
4983  /// FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4985 
4986  /// FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS that compensates for the difference between high and low field mobility of an ion.
4988 
4989  /// XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data.
4990  MS_XCMS = 1001582,
4991 
4992  /// MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass spectrometric data sets. It is specifically aimed at high resolution MS data.
4993  MS_MaxQuant = 1001583,
4994 
4995  /// combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (aka Peptide Fragment Fingerprint - PFF).
4997 
4998  /// MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra.
4999  MS_MyriMatch = 1001585,
5000 
5001  /// DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
5002  MS_DirecTag = 1001586,
5003 
5004  /// TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
5005  MS_TagRecon = 1001587,
5006 
5007  /// Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra.
5008  MS_Pepitome = 1001588,
5009 
5010  /// MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5011  MS_MyriMatch_MVH = 1001589,
5012 
5013  /// Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5015 
5016  /// TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divided into several intensity classes, this score is the negative natural log probability that the predicted peaks matched to experimental peaks by random chance.
5018 
5019  /// MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5021 
5022  /// Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5024 
5025  /// TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks match to experimental peaks by random chance by scoring the m/z delta of the matches in a multinomial distribution.
5027 
5028  /// anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-set proteins.
5030 
5031  /// family member protein: A protein with significant homology to another protein, but some distinguishing peptide matches.
5033 
5034  /// group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relationship OR ortholog protein.
5036 
5037  /// sequence same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to an identical set of peptide sequences.
5039 
5040  /// spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein, having matches to a set of peptide sequences that cannot be distinguished using the evidence in the mass spectra.
5042 
5043  /// sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protein, and no distinguishing peptide matches.
5045 
5046  /// spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein, where the matches cannot be distinguished using the evidence in the mass spectra, and no distinguishing peptide matches.
5048 
5049  /// sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are distributed across two or more proteins.
5051 
5052  /// spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are distributed across two or more proteins.
5054 
5055  /// protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
5057 
5058  /// ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files.
5060 
5061  /// ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format) file.
5063 
5064  /// ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
5066 
5067  /// ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
5069 
5070  /// ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
5072 
5073  /// ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
5075 
5076  /// ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion.
5078 
5079  /// ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion.
5081 
5082  /// ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spectrum that is allowed to pass the filter and to be subjected to further processing in the workflow.
5084 
5085  /// ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
5087 
5088  /// ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
5090 
5091  /// ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for a given MSn scan. This option applies only to higher-order MSn scans (n >= 3).
5093 
5094  /// ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
5096 
5097  /// ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM), Single Reaction Monitoring (SRM)).
5099 
5100  /// ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectra that have a total intensity current(sum of the intensities of all peaks in a spectrum) below the specified value.
5102 
5103  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmentation method to use in the search algorithm if it is not included in the scan header.
5105 
5106  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of the precursor ions, if it is not defined in the scan header.
5108 
5109  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spectrometer to use to produce the spectra, if it is not included in the scan header.
5111 
5112  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order used to produce the product spectra, if it is not included in the scan header.
5114 
5115  /// ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of the ions monitored if it is not included in the scan header.
5117 
5118  /// ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
5120 
5121  /// ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge ratio (m/z) window in daltons used to remove precursors.
5123 
5124  /// ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral loss.
5126 
5127  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge-reduced precursor peaks found in an ETD or ECD spectrum are removed.
5129 
5130  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss peaks are removed from ETD and ECD spectra.
5132 
5133  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks are removed from LTQ FT or LTQ FT Ultra ECD spectra.
5135 
5136  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overtone peaks in the spectrum are removed from the input spectrum.
5138 
5139  /// ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact peaks from the MS2 input spectra are removed.
5141 
5142  /// ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spectrum for scans with the same precursor mass is grouped, regardless of mass analyzer and activation type.
5144 
5145  /// ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from different MS order scans can be grouped together.
5147 
5148  /// ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be grouped must reside to be considered the same species.
5150 
5151  /// ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the given mass and retention-time tolerances into a single spectrum for analysis.
5153 
5154  /// ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution of multiply charged data.
5156 
5157  /// ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5159 
5160  /// ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of multiply charged data.
5162 
5163  /// ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measured spectrum that are considered for Xtract.
5165 
5166  /// ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern, i.e. all isotopes of a mass are removed from the spectrum.
5168 
5169  /// ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlapping multiplet must exceed in order to be processed (deconvoluted).
5171 
5172  /// ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be considered valid.
5174 
5175  /// ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
5177 
5178  /// ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out.
5180 
5181  /// ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out.
5183 
5184  /// ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with scores above the threshold score are retained rather than filtered out.
5186 
5187  /// ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs).
5189 
5190  /// ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid.
5192 
5193  /// ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application searches an additional decoy database.
5195 
5196  /// ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
5198 
5199  /// ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in MByte.
5201 
5202  /// ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server.
5204 
5205  /// ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the Mascot search.
5207 
5208  /// ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search.
5210 
5211  /// ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
5213 
5214  /// ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between attempts to submit a search in seconds.
5216 
5217  /// ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
5219 
5220  /// ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or mmu.
5222 
5223  /// Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
5225 
5226  /// ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider during the digest.
5228 
5229  /// ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptide must exceed in order to be reported.
5231 
5232  /// ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to be the same species.
5234 
5235  /// ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that each protein must exceed in order to be reported.
5237 
5238  /// ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server).
5240 
5241  /// ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a threshold that determines whether a protein appears in the results report.
5243 
5244  /// ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with moderate confidence.
5246 
5247  /// ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR, 0.0 - 1.0) for peptide hits with high confidence.
5249 
5250  /// ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of species.
5252 
5253  /// ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
5255 
5256  /// Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
5258 
5259  /// ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whether peptides in an .srf file are imported.
5261 
5262  /// ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability score for every peptide match.
5264 
5265  /// ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used during the search.
5267 
5268  /// ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that must be found in order for a peptide to be scored and retained.
5270 
5271  /// ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modifications that a single peptide can have.
5273 
5274  /// ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a peptide can have, e.g. because of steric hindrance.
5276 
5277  /// ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched and scored per spectrum.
5279 
5280  /// ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum.
5282 
5283  /// ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single identified peptide can be associated with during protein assembly.
5285 
5286  /// ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used during the search.
5288 
5289  /// ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used during the search.
5291 
5292  /// ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used during the search.
5294 
5295  /// ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score.
5297 
5298  /// ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether the protein that it is a part of is scored and retained in the report.
5300 
5301  /// ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer application searches against a decoy database.
5303 
5304  /// ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments.
5306 
5307  /// ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for spectrum matching.
5309 
5310  /// ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for spectrum matching.
5312 
5313  /// ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for spectrum matching.
5315 
5316  /// ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for spectrum matching.
5318 
5319  /// ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative factor.
5321 
5322  /// ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative factor.
5324 
5325  /// ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative factor.
5327 
5328  /// ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative factor.
5330 
5331  /// ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative factor.
5333 
5334  /// ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative factor.
5336 
5337  /// ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative factor.
5339 
5340  /// ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative factor.
5342 
5343  /// ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative factor.
5345 
5346  /// ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must exceed in order to be reported.
5348 
5349  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more than one peak is found inside the integration window.
5351 
5352  /// ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge window that enables one to look for the reporter peaks.
5354 
5355  /// ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically labeled quantitation.
5357 
5358  /// ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta, mgf or mzData).
5360 
5361  /// ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported data.
5363 
5364  /// ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications search.
5366 
5367  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr parameter for charge = 1.
5369 
5370  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr parameter for charge = 2.
5372 
5373  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr parameter for charge = 3.
5375 
5376  /// ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr parameter for charge >= 4.
5378 
5379  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr parameter for charge = 1.
5381 
5382  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr parameter for charge = 2.
5384 
5385  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr parameter for charge = 3.
5387 
5388  /// ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr parameter for charge >= 4.
5390 
5391  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for charge = 1.
5393 
5394  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for charge = 2.
5396 
5397  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for charge = 3.
5399 
5400  /// ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for charge >= 4.
5402 
5403  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter for charge = 1.
5405 
5406  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter for charge = 2.
5408 
5409  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter for charge = 3.
5411 
5412  /// ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter for charge >= 4.
5414 
5415  /// ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer's 1st dynamic post-translational modification (PTM) input parameter.
5417 
5418  /// ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer's 2nd dynamic post-translational modification (PTM) input parameter.
5420 
5421  /// ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer's 3rd dynamic post-translational modification (PTM) input parameter.
5423 
5424  /// ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer's 4th dynamic post-translational modification (PTM) input parameter.
5426 
5427  /// ProteomeDiscoverer:Static Modification for X: Static Modification for X.
5429 
5430  /// ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contribute to analysis.
5432 
5433  /// ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to protein probability.
5435 
5436  /// ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability.
5438 
5439  /// ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
5441 
5442  /// ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
5444 
5445  /// ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
5447 
5448  /// ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
5450 
5451  /// ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
5453 
5454  /// ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein ids (sum of probabilities).
5456 
5457  /// ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
5459 
5460  /// ProteomeDiscoverer:Reference Database: Full path database name.
5462 
5463  /// ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides.
5465 
5466  /// ProteomeDiscoverer:Source file extension: File type (if not pepXML).
5468 
5469  /// ProteomeDiscoverer:Source Files: Input pepXML files.
5471 
5472  /// ProteomeDiscoverer:Source Files old: Input pepXML files (old).
5474 
5475  /// ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
5477 
5478  /// ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
5480 
5481  /// LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
5483 
5484  /// ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching.
5486 
5487  /// ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching.
5489 
5490  /// ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching.
5492 
5493  /// ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching.
5495 
5496  /// ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching.
5498 
5499  /// ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching.
5501 
5502  /// ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching.
5504 
5505  /// ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching.
5507 
5508  /// ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching.
5510 
5511  /// ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor reevaluation.
5513 
5514  /// ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are removed (in FT mode only).
5516 
5517  /// ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer uses for mascot searches.
5519 
5520  /// contact phone number: Phone number of the contact person or organization.
5522 
5523  /// contact fax number: Fax number for the contact person or organization.
5525 
5526  /// contact toll-free phone number: Toll-free phone number of the contact person or organization.
5528 
5529  /// Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either 'identity' or 'homology').
5531 
5532  /// Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of 'none', 'Occam's razor' or 'family clustering').
5534 
5535  /// Percolator:features: List of Percolator features that were used in processing the peptide matches. Typical Percolator features are 'retentionTime', 'dM', 'mScore', 'lgDScore', 'mrCalc', 'charge' and 'dMppm'.
5537 
5538  /// ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
5539  MS_ACQUITY_UPLC = 1001761,
5540 
5541  /// ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
5543 
5544  /// ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
5546 
5547  /// ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
5549 
5550  /// ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology.
5552 
5553  /// nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
5555 
5556  /// nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology.
5558 
5559  /// nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
5561 
5562  /// TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
5564 
5565  /// GCT Premier: Waters oa-ToF based GCT Premier.
5566  MS_GCT_Premier = 1001770,
5567 
5568  /// MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
5570 
5571  /// MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
5573 
5574  /// MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
5576 
5577  /// MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
5579 
5580  /// MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
5582 
5583  /// MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
5585 
5586  /// Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
5588 
5589  /// Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
5590  MS_Synapt_G2_MS = 1001778,
5591 
5592  /// Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
5594 
5595  /// Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
5597 
5598  /// Synapt HDMS: Waters oa-ToF based Synapt HDMS.
5599  MS_Synapt_HDMS = 1001781,
5600 
5601  /// Synapt MS: Waters oa-ToF based Synapt MS.
5602  MS_Synapt_MS = 1001782,
5603 
5604  /// Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
5605  MS_Xevo_G2_Q_Tof = 1001783,
5606 
5607  /// Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
5608  MS_Xevo_G2_Tof = 1001784,
5609 
5610  /// Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
5611  MS_Xevo_Q_Tof = 1001785,
5612 
5613  /// 3100: Waters quadrupole based 3100.
5614  MS_3100 = 1001786,
5615 
5616  /// Acquity SQD: Waters quadrupole based Acquity SQD.
5617  MS_Acquity_SQD = 1001787,
5618 
5619  /// Acquity TQD: Waters quadrupole based Acquity TQD.
5620  MS_Acquity_TQD = 1001788,
5621 
5622  /// Quattro micro GC: Waters quadrupole based Quattro micro GC.
5624 
5625  /// Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
5626  MS_Xevo_TQ_MS = 1001790,
5627 
5628  /// Xevo TQD: Waters quadrupole based Xevo TQD.
5629  MS_Xevo_TQD = 1001791,
5630 
5631  /// Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
5632  MS_Xevo_TQ_S = 1001792,
5633 
5634  /// Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same set of peptides or when protein entry in database represents multiple sequences.
5636 
5637  /// Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
5638  MS_Empower = 1001795,
5639 
5640  /// Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition.
5641  MS_Unify = 1001796,
5642 
5643  /// travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5645 
5646  /// TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique based on the superimposition of travelling voltage waves on a radially-confining RF voltage in a gas-filled, stacked-ring ion guide.
5648 
5649  /// LECO software: LECO software for data acquisition and analysis.
5650  MS_LECO_software = 1001798,
5651 
5652  /// ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments.
5654 
5655  /// LECO instrument model: LECO instrument model.
5657 
5658  /// Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
5659  MS_Pegasus_HRT = 1001801,
5660 
5661  /// Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
5662  MS_Citius_HRT = 1001802,
5663 
5664  /// Pegasus: LECO GC time-of-flight mass spectrometer.
5665  MS_Pegasus = 1001803,
5666 
5667  /// TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
5668  MS_TruTOF = 1001804,
5669 
5670  /// quantification datatype: The data type of the value reported in a QuantLayer for a feature, peptide, protein, protein group.
5672 
5673  /// quantification object attribute: Attributes describing the details of an object relevant for reporting quantification workflows or values.
5675 
5676  /// study variable attribute: Attribute describing a study variable.
5678 
5679  /// technical replicate: The study variable is 'technical replicate'. The string value denotes the category of technical replicate, e.g. 'run generated from same sample'.
5681 
5682  /// biological replicate: The study variable is 'biological replicate'. This means, the run was generated from another individual or sample.
5684 
5685  /// experimental condition 'case': The experimental condition is 'case' in contrast to 'control'.
5687 
5688  /// experimental condition 'control': The experimental condition is 'control' in contrast to 'case'.
5690 
5691  /// experimental condition 'disease': The experimental condition is 'disease' in contrast to 'healthy'.
5693 
5694  /// experimental condition 'healthy': The experimental condition is 'healthy' in contrast to 'disease'.
5696 
5697  /// generic experimental condition: The experimental condition is given in the value of this term.
5699 
5700  /// time series, time point X: The experimental design followed a time series design. The time point of this run is given in the value of this term.
5702 
5703  /// dilution series, concentration X: The experimental design followed a dilution series design. The concentration of this run is given in the value of this term.
5705 
5706  /// raw file attribute: Attribute describing a raw file.
5708 
5709  /// one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
5711 
5712  /// two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling).
5714 
5715  /// three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
5717 
5718  /// four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
5720 
5721  /// eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
5723 
5724  /// raw files group attribute: Attribute describing, how raw files build a raw file group.
5726 
5727  /// merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group.
5729 
5730  /// feature list attribute: Attribute describing a feature list.
5732 
5733  /// mass trace reporting: rectangles: The mass trace of the features of this feature list specifies rectangles. Each mass trace has the syntax (RT_start,MZ_start,RT_end,MZ_end), i.e. opposite corners are given.
5735 
5736  /// mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygons. Each mass trace has the syntax (RT_1, MZ_1, RT_2, MZ_2, ... , RT_i, MZ_i, ... , RT_n, MZ_n), where the line (RT_n, MZ_n)->(RT_1, MZ_1) is implicit.
5738 
5739  /// feature attribute: Attribute describing a feature.
5741 
5742  /// SRM transition ID: Identifier for an SRM transition in an external document describing additional information about the transition.
5744 
5745  /// Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow.
5747 
5748  /// SILACAnalyzer: Software for SILAC workflow.
5749  MS_SILACAnalyzer = 1001831,
5750 
5751  /// quantitation software comment or customizations: Quantitation software comment or any customizations to the default setup of the software.
5753 
5754  /// quantitation analysis summary: The overall workflow of this quantitation report.
5756 
5757  /// LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
5759 
5760  /// SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
5762 
5763  /// spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra as approximation of peptide / protein quant).
5765 
5766  /// iTRAQ quantitation analysis: Quantification analysis using the SCIEX iTRAQ isobaric labelling workflow, wherein 2-8 reporter ions are measured in MS2 spectra near 114 m/z.
5768 
5769  /// SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fragment mass pair).
5771 
5772  /// metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light versions of peptides, depending on number of nitrogens).
5774 
5775  /// LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
5777 
5778  /// LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
5780 
5781  /// peptide PSM count: The number of MS2 spectra identified for this peptide in spectral counting.
5783 
5784  /// MS1 feature maximum intensity: Maximum intensity of MS1 feature.
5786 
5787  /// MS1 feature area: Area of MS1 feature.
5789 
5790  /// peak area: Area of MS1 peak (e.g. SILAC, 15N).
5792 
5793  /// isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e.g. 15N).
5795 
5796  /// reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
5798 
5799  /// simple ratio of two values: Simple ratio of two values (enumerator and denominator).
5801 
5802  /// sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quantification values.
5804 
5805  /// normalized peptide value: Normalized peptide value.
5807 
5808  /// protein value: sum of peptide values: Protein quantification value calculated as sum of peptide values.
5810 
5811  /// normalized protein value: Normalized protein value.
5813 
5814  /// max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e.g. Progenesis).
5816 
5817  /// ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
5818  MS_ANOVA_p_value = 1001854,
5819 
5820  /// t-test p-value: P-value of t-Test of two groups.
5822 
5823  /// reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
5825 
5826  /// reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq).
5828 
5829  /// XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
5830  MS_XIC_area = 1001858,
5831 
5832  /// normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM).
5834 
5835  /// protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide ratios.
5837 
5838  /// quantification data processing: Terms used to describe types of quantification data processing.
5840 
5841  /// normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum of all protein PSM counts (e.g. spectral counting).
5843 
5844  /// quantile normalization, proteins: Normalization of protein values to approach the same distribution.
5846 
5847  /// quantile normalization, peptides: Normalization of peptide values to approach the same distribution.
5849 
5850  /// Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
5852 
5853  /// Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors.
5855 
5856  /// Progenesis normalization: Normalization as performed by Progenesis LC-MS.
5858 
5859  /// distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs, possibly with different mass modifications, mapping to the same sequence have been collapsed to one entry).
5861 
5862  /// protein-level q-value: Estimation of the q-value for proteins.
5864 
5865  /// peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
5867 
5868  /// protein-level p-value: Estimation of the p-value for proteins.
5870 
5871  /// peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
5873 
5874  /// protein-level e-value: Estimation of the e-value for proteins.
5876 
5877  /// FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engines, such that ordering of result quality is maintained and all FDRScore values are guaranteed to have a value > 0.
5879 
5880  /// modification motif: The regular expression describing the sequence motif for a modification.
5882 
5883  /// modification probability: The a priori probability of a modification.
5885 
5886  /// ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instruments.
5888 
5889  /// MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
5891 
5892  /// offset voltage: The potential difference between two adjacent interface voltages affecting in-source collision induced dissociation.
5894 
5895  /// in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excitation during ion transfer from an atmospheric pressure ion source and the mass spectrometer vacuum.
5897 
5898  /// mz5 format: mz5 file format, modelled after mzML.
5899  MS_mz5_format = 1001881,
5900 
5901  /// transition validation attribute: Attributes of the quality of a transition that affect its selection as appropriate.
5903 
5904  /// coefficient of variation: Variation of a set of signal measurements calculated as the standard deviation relative to the mean.
5906 
5907  /// signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signal relative to the estimated noise level for that signal.
5909 
5910  /// command-line parameters: Parameters string passed to a command-line interface software application, omitting the executable name.
5912 
5913  /// SQID: Software for data analysis of peptides and proteins.
5914  MS_SQID = 1001886,
5915 
5916  /// SQID:score: The SQID result 'Score'.
5917  MS_SQID_score = 1001887,
5918 
5919  /// SQID:deltaScore: The SQID result 'deltaScore'.
5921 
5922  /// SQID:protein score: The SQID result 'protein score'.
5924 
5925  /// Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by Progenesis LC-MS.
5927 
5928  /// Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by Progenesis LC-MS.
5930 
5931  /// Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-MS.
5933 
5934  /// Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-MS.
5936 
5937  /// Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS.
5939 
5940  /// Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
5942 
5943  /// Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS.
5945 
5946  /// MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant.
5948 
5949  /// MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
5951 
5952  /// MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQuant.
5954 
5955  /// MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
5957 
5958  /// MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
5959  MS_MaxQuant_PEP = 1001901,
5960 
5961  /// MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
5963 
5964  /// MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant.
5966 
5967  /// MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
5969 
5970  /// emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
5971  MS_emPAI_value = 1001905,
5972 
5973  /// APEX value: The APEX value of protein abundance, produced from the APEX software.
5974  MS_APEX_value = 1001906,
5975 
5976  /// retention time window width: The full width of a retention time window for a chromatographic peak.
5978 
5979  /// ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
5980  MS_ISQ = 1001908,
5981 
5982  /// Velos Plus: Thermo Scientific second generation Velos.
5983  MS_Velos_Plus = 1001909,
5984 
5985  /// LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
5987 
5988  /// Q Exactive: Thermo Scientific Q Exactive.
5989  MS_Q_Exactive = 1001911,
5990 
5991  /// PinPoint: Thermo Scientific PinPoint SRM analysis software.
5992  MS_PinPoint = 1001912,
5993 
5994  /// S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide in volts.
5996 
5997  /// pymzML: Python module to interface mzML Data.
5998  MS_pymzML = 1001914,
5999 
6000  /// leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
6002 
6003  /// proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
6005 
6006  /// glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6008 
6009  /// staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6011 
6012  /// Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
6014 
6015  /// 2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
6017 
6018  /// ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
6020 
6021  /// ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number.
6023 
6024  /// Digital Object Identifier (DOI): DOI unique identifier of a publication.
6026 
6027  /// doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
6029 
6030  /// external reference keyword: Free text attribute that can enrich the information about an entity.
6032 
6033  /// journal article keyword: Keyword present in a scientific publication.
6035 
6036  /// submitter keyword: Keyword assigned by the data submitter.
6038 
6039  /// curator keyword: Keyword assigned by a data curator.
6041 
6042  /// Tranche file hash: Hash assigned by the Tranche resource to an individual file.
6044 
6045  /// Tranche project hash: Hash assigned by the Tranche resource to a whole project.
6047 
6048  /// PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
6050 
6051  /// PRIDE project URI: URI that allows the access to one project in the PRIDE database.
6053 
6054  /// source interface: The source interface.
6056 
6057  /// source interface model: The source interface model.
6059 
6060  /// source sprayer: The source sprayer.
6062 
6063  /// source sprayer type: The source sprayer type.
6065 
6066  /// source sprayer manufacturer: The source sprayer manufacturer.
6068 
6069  /// source sprayer model: The source sprayer model.
6071 
6072  /// sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
6073  MS_sample_plate = 1001937,
6074 
6075  /// sample plate type: The sample plate type.
6077 
6078  /// stainless steel plate: Stainless steel plate.
6080 
6081  /// coated glass plate: Coated glass plate.
6083 
6084  /// electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
6086 
6087  /// static supply electrospray: The sprayer is loaded with sample once.
6089 
6090  /// fed supply electrospray: The sprayer is continuously fed with sample.
6092 
6093  /// Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6095 
6096  /// CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole instrument in volts.
6098 
6099  /// Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
6100  MS_Pegasus_4D = 1001945,
6101 
6102  /// PEAKS Studio: PEAKS Studio software for data analysis.
6103  MS_PEAKS_Studio = 1001946,
6104 
6105  /// PEAKS Online: PEAKS Online software for high throughput data analysis.
6106  MS_PEAKS_Online = 1001947,
6107 
6108  /// PEAKS Node: PEAKS Node software for high throughput data analysis.
6109  MS_PEAKS_Node = 1001948,
6110 
6111  /// BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
6112  MS_BSI_software = 1001949,
6113 
6114  /// PEAKS:peptideScore: The PEAKS peptide '-10lgP Score'.
6116 
6117  /// PEAKS:proteinScore: The PEAKS protein '-10lgP Score'.
6119 
6120  /// ZCore:probScore: The ZCore probability score.
6122 
6123  /// source interface manufacturer: The source interface manufacturer.
6125 
6126  /// acquisition parameter: Parameters used in the mass spectrometry acquisition.
6128 
6129  /// no cleavage: No cleavage.
6130  MS_no_cleavage = 1001955,
6131 
6132  /// unspecific cleavage: Unspecific cleavage.
6134 
6135  /// (?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
6137 
6138  /// (?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
6140 
6141  /// (?<=[^E]E): Regular expression for glutamyl endopeptidase.
6142  MS_______E_E_ = 1001959,
6143 
6144  /// (?<=W): Regular expression for 2-iodobenzoate.
6145  MS_____W_ = 1001960,
6146 
6147  /// peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a peptide ion.
6149 
6150  /// Mascot:C13 counts: C13 peaks to use in peak detection.
6152 
6153  /// ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
6155 
6156  /// ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
6158 
6159  /// ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
6161 
6162  /// product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectrometry.
6164 
6165  /// product ion drift time: The ion drift time of an MS2 product ion.
6167 
6168  /// PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence at the PSM-level.
6170 
6171  /// phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
6173 
6174  /// phosphoRS sequence probability: Probability that the respective isoform is correct.
6176 
6177  /// phosphoRS site probability: Estimate of the probability that the respective site is truly phosphorylated.
6179 
6180  /// PTM scoring algorithm version: Version of the post-translational modification scoring algorithm.
6182 
6183  /// DeBunker: DeBunker software.
6184  MS_DeBunker = 1001973,
6185 
6186  /// DeBunker:score: Score specific to DeBunker.
6188 
6189  /// delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6190  MS_delta_m_z = 1001975,
6191 
6192  /// m/z difference (delta m/z): The difference between a theoretically calculated m/z and the corresponding experimentally measured m/z. It can be expressed as absolute or relative value.
6194 
6195  /// delta M: The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6196  MS_delta_M = 1001976,
6197 
6198  /// mass difference (delta M): The difference between a theoretically calculated molecular mass M and the corresponding experimentally measured M. It can be expressed as absolute or relative value.
6200 
6201  /// MSQuant: MSQuant software.
6202  MS_MSQuant = 1001977,
6203 
6204  /// MSQuant:PTM-score: The PTM score from MSQuant software.
6206 
6207  /// MaxQuant:PTM Score: The PTM score from MaxQuant software.
6209 
6210  /// MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software.
6212 
6213  /// MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
6215 
6216  /// MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant software.
6218 
6219  /// MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highest scoring site and second highest).
6221 
6222  /// Ascore software: Ascore software.
6224 
6225  /// Ascore: A-score for PTM site location at the PSM-level.
6226  MS_Ascore = 1001985,
6227 
6228  /// H-Score: H-Score for peptide phosphorylation site location.
6229  MS_H_Score = 1001986,
6230 
6231  /// vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method.
6233 
6234  /// crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method.
6236 
6237  /// fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method.
6239 
6240  /// overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method and the fast-evaporation method.
6242 
6243  /// sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
6245 
6246  /// spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
6248 
6249  /// quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix handling from sample handling.
6251 
6252  /// top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations 'erosion' and 'dilatation'.
6254 
6255  /// convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum starting with the large scale structures.
6257 
6258  /// median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of segments.
6260 
6261  /// wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transform.
6263 
6264  /// sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum.
6266 
6267  /// SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured spectrum.
6269 
6270  /// area normalization: Normalization of areas below the curves.
6272 
6273  /// LIFT: A Bruker's proprietary technique where molecular ions are initially accelerated at lower energy, then collide with inert gas in a collision cell that is then 'lifted' to high potential. The use of inert gas is optional, as it could lift also fragments provided by LID.
6274  MS_LIFT = 1002000,
6275 
6276  /// MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
6278 
6279  /// MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
6281 
6282  /// MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
6284 
6285  /// MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation.
6287 
6288  /// iRT retention time normalization standard: A de facto standard providing the retention times at which a specific set of 10 reference peptides exit the reference chromatographic column. The kit may be obtain from Biognosys.
6290 
6291  /// SRM transition type: The type of the transitions, e.g. target or decoy.
6293 
6294  /// MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy.
6296 
6297  /// target SRM transition: A transition used to target a specific compound that may be in the sample.
6299 
6300  /// target MRM transition (target SRM transition): A transition used to target a specific compound that may be in the sample.
6302 
6303  /// decoy SRM transition: A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6305 
6306  /// decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample and used to calculate statistical confidence of target transition detections in some workflows.
6308 
6309  /// isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow.
6311 
6312  /// TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labelling workflow.
6314 
6315  /// desorption electrospray ionization: Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6317 
6318  /// DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization method that ionizes gases, liquids and solids in open air under atmospheric pressure.
6320 
6321  /// Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct, derived from the Mascot score difference between matches to the same spectrum (Mascot Delta Score).
6323 
6324  /// collision energy ramp start: Collision energy at the start of the collision energy ramp.
6326 
6327  /// collision energy ramp end: Collision energy at the end of the collision energy ramp.
6329 
6330  /// spectral count peptide level quantitation: Spectral count peptide level quantitation.
6332 
6333  /// spectral count protein level quantitation: Spectral count protein level quantitation.
6335 
6336  /// spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation.
6338 
6339  /// MS1 label-based analysis: MS1 label-based analysis.
6341 
6342  /// label-free raw feature quantitation: Label-free raw feature quantitation.
6344 
6345  /// label-free peptide level quantitation: Label-free peptide level quantitation.
6347 
6348  /// label-free protein level quantitation: Label-free protein level quantitation.
6350 
6351  /// label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
6353 
6354  /// MS2 tag-based analysis: MS2 tag-based analysis.
6356 
6357  /// MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
6359 
6360  /// MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
6362 
6363  /// MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
6365 
6366  /// MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
6368 
6369  /// nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion).
6371 
6372  /// original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
6374 
6375  /// modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
6377 
6378  /// PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas SRM Experiment Library) experiment.
6380 
6381  /// PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
6383 
6384  /// contact role: Role of the contact person.
6385  MS_contact_role = 1002033,
6386 
6387  /// first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
6388  MS_first_author = 1002034,
6389 
6390  /// senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
6391  MS_senior_author = 1002035,
6392 
6393  /// co-author: One of a set of authors associated with a publication or release.
6394  MS_co_author = 1002036,
6395 
6396  /// dataset submitter: A person who submits a dataset to a repository.
6398 
6399  /// unlabeled sample: A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6401 
6402  /// light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as \"light\" to distinguish from \"heavy\".
6404 
6405  /// inlet attribute: Inlet properties that are associated with a value.
6407 
6408  /// inlet temperature: The temperature of the inlet of a mass spectrometer.
6410 
6411  /// source temperature: The temperature of the source of a mass spectrometer.
6413 
6414  /// modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional separation system, equals the length of a second dimension chromatogram, i.e., the time between two successive injections into the second column.
6416 
6417  /// ProteinProspector: ProteinProspector software for data acquisition and analysis.
6419 
6420  /// ProteinProspector:score: The ProteinProspector result 'Score'.
6422 
6423  /// ProteinProspector:expectation value: The ProteinProspector result 'Expectation value'.
6425 
6426  /// native source path: The original source path used for directory-based sources.
6428 
6429  /// MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
6430  MS_MS_GF = 1002047,
6431 
6432  /// MS-GF+: MS-GF+ software used to analyze the spectra.
6433  MS_MS_GF_ = 1002048,
6434 
6435  /// MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
6437 
6438  /// MS-GF:RawScore: MS-GF raw score.
6440 
6441  /// MS-GF:DeNovoScore: MS-GF de novo score.
6443 
6444  /// MS-GF:Energy: MS-GF energy score.
6445  MS_MS_GF_Energy = 1002051,
6446 
6447  /// MS-GF:SpecEValue: MS-GF spectral E-value.
6449 
6450  /// MS-GF:EValue: MS-GF E-value.
6451  MS_MS_GF_EValue = 1002053,
6452 
6453  /// MS-GF:QValue: MS-GF Q-value.
6454  MS_MS_GF_QValue = 1002054,
6455 
6456  /// MS-GF:PepQValue: MS-GF peptide-level Q-value.
6458 
6459  /// MS-GF:PEP: MS-GF posterior error probability.
6460  MS_MS_GF_PEP = 1002056,
6461 
6462  /// modification specificity protein N-term: As parameter for search engine: apply the modification only at the N-terminus of a protein.
6464 
6465  /// modification specificity protein C-term: As parameter for search engine: apply the modification only at the C-terminus of a protein.
6467 
6468  /// Microsoft Excel: Microsoft Excel (can be used for spectral counting).
6470 
6471  /// database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
6473 
6474  /// decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
6476 
6477  /// metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N).
6479 
6480  /// FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
6481  MS_FindPairs = 1002063,
6482 
6483  /// peptide consensus RT: Peptide consensus retention time.
6485 
6486  /// peptide consensus m/z: Peptide consensus mass/charge ratio.
6488 
6489  /// ratio calculation method: Method used to calculate the ratio.
6491 
6492  /// protein value: median of peptide ratios: Protein quantification value calculated as median of peptide ratios.
6494 
6495  /// metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
6497 
6498  /// metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity of feeding material (e.g. 95%), or the inclusion rate derived from isotopic peak pattern shape.
6500 
6501  /// t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
6502  MS_t_test = 1002070,
6503 
6504  /// ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
6505  MS_ANOVA_test = 1002071,
6506 
6507  /// p-value: P-value as result of one of the processing steps described. Specify in the description, which processing step it was.
6508  MS_p_value = 1002072,
6509 
6510  /// mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI. File extension '.mzid'.
6512 
6513  /// quantification file format: File format containing quantification results.
6515 
6516  /// mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension '.mzq'.
6518 
6519  /// PAnalyzer: PAnalyzer software for getting protein evidence categories.
6520  MS_PAnalyzer = 1002076,
6521 
6522  /// impact: Bruker Daltonics' impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
6523  MS_impact = 1002077,
6524 
6525  /// ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer's 1st static post-translational modification (PTM) input parameter.
6527 
6528  /// ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer's 2nd static post-translational modification (PTM) input parameter.
6530 
6531  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before.
6533 
6534  /// ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after.
6536 
6537  /// first column elution time: The time of elution from the first chromatographic column in the chromatographic separation step, relative to the start of chromatography on the first column.
6539 
6540  /// second column elution time: The time of elution from the second chromatographic column in the chromatographic separation step, relative to the start of the chromatography on the second column.
6542 
6543  /// multidimensional chromatography modulation description: Multidimensional chromatography modulation description.
6545 
6546  /// two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography where a single modulation time is used throughout the acquisition.
6548 
6549  /// two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatography where the acquisition is divided into steps, each with a different modulation time.
6551 
6552  /// two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatography where a single modulation time is used throughout the acquisition.
6554 
6555  /// two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chromatography where the acquisition is divided into steps, each with a different modulation time.
6557 
6558  /// ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that do not belong to a protein.
6560 
6561  /// Calculate Probability Scores: Flag indicating that a probability score for the assessment that a reported peptide match is a random occurrence is calculated.
6563 
6564  /// ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM's.
6566 
6567  /// Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validation score using Percolator.
6569 
6570  /// search engine input parameter: Search engine input parameter.
6572 
6573  /// common search engine input parameter: Search engine input parameter that is shared by more than one search engine.
6575 
6576  /// Mascot input parameter: Search engine input parameters specific to Mascot.
6578 
6579  /// SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
6581 
6582  /// Phenyx input parameter: Search engine input parameters specific to Phenyx.
6584 
6585  /// ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
6587 
6588  /// OMSSA input parameter: Search engine input parameters specific to OMSSA.
6590 
6591  /// ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
6593 
6594  /// ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
6596 
6597  /// software input parameter: Software input parameters.
6599 
6600  /// common software input parameter: Software input parameter that is shared by more than one software.
6602 
6603  /// software specific input parameter: Software specific input parameter.
6605 
6606  /// Scaffold input parameter: Search engine input parameters specific to Scaffold.
6608 
6609  /// Percolator input parameter: Search engine input parameters specific to Percolator.
6611 
6612  /// higher score better: Indicates that a higher score is better.
6614 
6615  /// lower score better: Indicates that a lower score is better.
6617 
6618  /// assay attribute: Attribute describing an assay.
6620 
6621  /// assay label attribute: Attribute describing an assay label.
6623 
6624  /// protein group list attribute: Attribute describing a protein group list.
6626 
6627  /// protein group attribute: Attribute describing a protein group.
6629 
6630  /// protein list attribute: Attribute describing a protein list.
6632 
6633  /// peptide consensus list attribute: Attribute describing a peptide consensus list.
6635 
6636  /// peptide consensus attribute: Attribute describing a peptide consensus.
6638 
6639  /// small molecule list attribute: Attribute describing a small molecule list.
6641 
6642  /// small molecule attribute: Attribute describing a small molecule.
6644 
6645  /// small molecule modification attribute: Attribute describing a small molecule modification.
6647 
6648  /// experiment name: The name for identifying an experiment.
6650 
6651  /// spectral count feature: Dummy decribing a spectral count feature.
6653 
6654  /// counts reporting: FeatureList of spectral counts.
6656 
6657  /// x-Tracker: X-Tracker generic tool for quantitative proteomics.
6658  MS_x_Tracker = 1002123,
6659 
6660  /// ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
6661  MS_ProteoSuite = 1002124,
6662 
6663  /// combined FDRScore: FDRScore values specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
6665 
6666  /// database UniProtKB: The name of the UniProtKB knowledgebase.
6668 
6669  /// identification file attribute: Attribute describing an identification file.
6671 
6672  /// method file format: Attribute describing a method file format.
6674 
6675  /// ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS experiment.
6676  MS_ITRAQAnalyzer = 1002129,
6677 
6678  /// identification file format: Attribute describing an identification file format.
6680 
6681  /// TOPP noise filter: Noise filter component of the TOPP software.
6683 
6684  /// TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
6686 
6687  /// TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing.
6689 
6690  /// TOPP peak picker: Peak picker component of the TOPP software.
6692 
6693  /// TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra.
6695 
6696  /// TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted profile mass spectra.
6698 
6699  /// TOPP spectra filter: Spectra filter component of the TOPP software.
6701 
6702  /// TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
6704 
6705  /// TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks.
6707 
6708  /// TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
6710 
6711  /// TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra.
6713 
6714  /// TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra.
6716 
6717  /// TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank.
6719 
6720  /// TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square root.
6722 
6723  /// TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra.
6725 
6726  /// TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak spectrum.
6728 
6729  /// TOPP map aligner: Map aligner component of the TOPP software.
6731 
6732  /// TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common peptide identifications.
6734 
6735  /// TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clustering approach.
6737 
6738  /// TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment.
6740 
6741  /// numerator data type attribute: Attribute describing the data type of the numerator of a ratio.
6743 
6744  /// denominator data type attribute: Attribute describing the data type of the denominator of a ratio.
6746 
6747  /// protein level PSM counts: The number of spectra identified for this protein in spectral counting.
6749 
6750  /// TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
6752 
6753  /// TOPP IDMerger: Merges several protein/peptide identification files into one file.
6754  MS_TOPP_IDMerger = 1002155,
6755 
6756  /// TOPP IDFileConverter: Converts identification engine file formats.
6758 
6759  /// TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks.
6761 
6762  /// TOPP MzTabExporter: Exports various XML formats to an mzTab file.
6764 
6765  /// TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
6767 
6768  /// TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
6770 
6771  /// TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution data.
6773 
6774  /// TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples.
6776 
6777  /// TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity.
6779 
6780  /// TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps.
6782 
6783  /// TOPP feature finder: Feature finder component of the TOPP software.
6785 
6786  /// TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data.
6788 
6789  /// TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
6791 
6792  /// TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a wavelet algorithm.
6794 
6795  /// TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites.
6797 
6798  /// TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
6800 
6801  /// TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps.
6803 
6804  /// TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
6806 
6807  /// TOPP MapRTTransformer: Applies retention time transformations to maps.
6809 
6810  /// TOPP feature linker: Feature linker component of the TOPP software.
6812 
6813  /// TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map.
6815 
6816  /// TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
6818 
6819  /// TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality threshold clustering approach.
6821 
6822  /// TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
6823  MS_TOPP_CompNovo = 1002178,
6824 
6825  /// TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-induced dissociation (CID) mode.
6827 
6828  /// TOPP software adaptor: Software adaptor to an external program in the TOPP software.
6830 
6831  /// TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
6833 
6834  /// TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
6836 
6837  /// TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mascot.
6839 
6840  /// TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
6842 
6843  /// TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
6845 
6846  /// TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
6848 
6849  /// TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral library.
6851 
6852  /// TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identification engines.
6854 
6855  /// TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
6857 
6858  /// TOPP IDFilter: Filters results from protein or peptide identification engines based on different criteria.
6859  MS_TOPP_IDFilter = 1002190,
6860 
6861  /// TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
6862  MS_TOPP_IDMapper = 1002191,
6863 
6864  /// TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model.
6866 
6867  /// TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
6869 
6870  /// TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
6872 
6873  /// TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results.
6875 
6876  /// TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML).
6878 
6879  /// TOPP OpenSwath component: OpenSwath component of the TOPP software.
6881 
6882  /// TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
6884 
6885  /// TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
6887 
6888  /// TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML.
6890 
6891  /// TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values).
6893 
6894  /// TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized space.
6896 
6897  /// TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
6899 
6900  /// TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy searches.
6902 
6903  /// ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats.
6905 
6906  /// ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics experiments.
6908 
6909  /// ProteoWizard chainsaw: Filters and processes protein sequence databases.
6911 
6912  /// ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways.
6914 
6915  /// ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a variety of formats.
6917 
6918  /// IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data.
6919  MS_IsobariQ = 1002210,
6920 
6921  /// Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
6923 
6924  /// IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide termini are labelled so that the peptides from different labelling schema are isobaric.
6926 
6927  /// PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6929 
6930  /// PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are exclusive to the group (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6932 
6933  /// PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6935 
6936  /// PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclusive or indistinguishable proteins (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
6938 
6939  /// decoy peptide: A putative identified peptide issued from a decoy sequence database.
6940  MS_decoy_peptide = 1002217,
6941 
6942  /// percent collision energy ramp start: Collision energy at the start of the collision energy ramp in percent, normalized to the mass of the ion.
6944 
6945  /// percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percent, normalized to the mass of the ion.
6947 
6948  /// MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of identified peptide spectra held in the EBI's PRIDE database.
6949  MS_MRMaid = 1002220,
6950 
6951  /// MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM.
6953 
6954  /// SRM transition attribute: Attribute associated with a SRM transition.
6956 
6957  /// precursor ion detection probability: Probability of detecting precursor when parent protein is present.
6959 
6960  /// product ion detection probability: Probability of detecting product ion when precursor ion is present.
6962 
6963  /// average product ion intensity: Average value of product ion intensity in a collection of identified spectra.
6965 
6966  /// product ion intensity standard deviation: Standard deviation of product ion intensity in a collection of identified spectra.
6968 
6969  /// number of product ion observations: The number of times the specific product ion has been observed in a series of SRM experiments.
6971 
6972  /// number of precursor ion observations: The number of times the specific precursor ion has been observed in a series of SRM experiments.
6974 
6975  /// ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a decoy search for high-confidence peptides.
6977 
6978  /// ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy search for medium-confidence peptides.
6980 
6981  /// regular expressions for a GUID: ([A-Fa-f0-9]\{8\}-([A-Fa-f0-9]\{4\}-)\{3\}[A-Fa-f0-9]\{12\}).
6983 
6984  /// ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (GUID).
6986 
6987  /// ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectra are taken into consideration.
6989 
6990  /// selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
6992 
6993  /// ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetectionHypothesis in mzIdentML), based on summed peptide level scores.
6995 
6996  /// ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mzIdentML), based on all summed peptide level scores that have been assigned to the group as unique or razor peptides.
6998 
6999  /// mzidLib: A library of Java routines for manipulating mzIdentML files.
7000  MS_mzidLib = 1002237,
7001 
7002  /// mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
7004 
7005  /// mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
7007 
7008  /// mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
7010 
7011  /// mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files.
7013 
7014  /// mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting passThreshold to true or false for SpectrumIdentificationItem or ProteinDetectionHypothesis in mzIdentML files.
7016 
7017  /// mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file.
7019 
7020  /// mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML files, based on a decoy search.
7022 
7023  /// mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
7025 
7026  /// mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three search engines into a single mzIdentML file.
7028 
7029  /// mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequence entries (sequence and description) in mzIdentML files.
7031 
7032  /// SEQUEST:spscore: The SEQUEST result 'SpScore'.
7034 
7035  /// SEQUEST:sprank: The SEQUEST result 'SpRank'.
7037 
7038  /// SEQUEST:deltacnstar: The SEQUEST result 'DeltaCnStar'.
7040 
7041  /// Comet: Comet open-source sequence search engine developed at the University of Washington.
7042  MS_Comet = 1002251,
7043 
7044  /// Comet:xcorr: The Comet result 'XCorr'.
7045  MS_Comet_xcorr = 1002252,
7046 
7047  /// Comet:deltacn: The Comet result 'DeltaCn'.
7048  MS_Comet_deltacn = 1002253,
7049 
7050  /// Comet:deltacnstar: The Comet result 'DeltaCnStar'.
7052 
7053  /// Comet:spscore: The Comet result 'SpScore'.
7054  MS_Comet_spscore = 1002255,
7055 
7056  /// Comet:sprank: The Comet result 'SpRank'.
7057  MS_Comet_sprank = 1002256,
7058 
7059  /// Comet:expectation value: The Comet result 'Expectation value'.
7061 
7062  /// Comet:matched ions: The Comet result 'Matched Ions'.
7064 
7065  /// Comet:total ions: The Comet result 'Total Ions'.
7067 
7068  /// PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
7070 
7071  /// Byonic: Byonic search engine from Protein Metrics.
7072  MS_Byonic = 1002261,
7073 
7074  /// Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects the absolute quality of the peptide-spectrum match, not the relative quality compared to other candidate peptides. Byonic scores range from 0 to about 1000, with 300 a good score, 400 a very good score, and PSMs with scores over 500 almost sure to be correct.
7075  MS_Byonic_Score = 1002262,
7076 
7077  /// Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with distinct sequence. In this computation, the same peptide with different modifications is not considered distinct.
7079 
7080  /// Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide different in any way, including placement of modifications. DeltaMod gives an indication of whether modifications are confidently localized; DeltaMod over 10.0 means that there is high likelihood that all modification placements are correct.
7082 
7083  /// Byonic:PEP: Byonic posterior error probability.
7084  MS_Byonic_PEP = 1002265,
7085 
7086  /// Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM with such a score and delta would arise by chance in a search of this size (the size of the protein database, as expanded by the modification rules). A log p-value of -3.0 should happen by chance on only one of a thousand spectra. Caveat: it is very hard to compute a p-value that works for all searches and all spectra, so read Byonic p-values with a certain amount of skepticism.
7088 
7089  /// Byonic:Protein LogProb: The log p-value of the protein.
7091 
7092  /// Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
7094 
7095  /// Byonic:Best Score: Best (largest) Byonic score of a PSM.
7097 
7098  /// chromatography separation: A technique by which molecules are separated by chemical and physical properties such as hydrophobicity or vapour pressure.
7100 
7101  /// liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the mobile phase is a liquid.
7103 
7104  /// gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile phase is a gas.
7106 
7107  /// detector potential: Detector potential difference in volts.
7109 
7110  /// SQ Detector 2: Waters quadrupole based SQ Detector 2.
7111  MS_SQ_Detector_2 = 1002274,
7112 
7113  /// Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
7114  MS_Xevo_G2_S_Tof = 1002275,
7115 
7116  /// Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
7118 
7119  /// AutoSpec Premier: Waters AutoSpec Premier.
7121 
7122  /// Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
7123  MS_Pegasus_III = 1002278,
7124 
7125  /// maXis 4G: Bruker Daltonics' maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7126  MS_maXis_4G = 1002279,
7127 
7128  /// compact: Bruker Daltonics' compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7129  MS_compact = 1002280,
7130 
7131  /// SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
7133 
7134  /// SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
7136 
7137  /// SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
7139 
7140  /// SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation.
7142 
7143  /// Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7145 
7146  /// TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics data developed by the Seattle Proteome Center at the Institute for Systems Biology.
7148 
7149  /// Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipeline.
7151 
7152  /// PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data searched with any of the supported sequence or spectral library search engines via the pepXML format.
7154 
7155  /// iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines of corroborating evidence including search results from multiple search engines via the pepXML format.
7156  MS_iProphet = 1002288,
7157 
7158  /// ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM or peptide-level probabilities from PeptideProphet or iProphet. The output is written in the protXML format.
7160 
7161  /// XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
7162  MS_XPRESS = 1002290,
7163 
7164  /// Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-channel isobaric label peptide data such as iTRAQ, TMT, etc.
7165  MS_Libra = 1002291,
7166 
7167  /// PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the peaks that are available to distinguish between possible modification sites.
7168  MS_PTMProphet = 1002292,
7169 
7170  /// Bruker Daltonics SCION series: Bruker Daltonics' SCION series.
7172 
7173  /// Bruker Daltonics EVOQ series: Bruker Daltonics' EVOQ series.
7175 
7176  /// SCION SQ: Bruker Daltonics' SCION SQ: GC-single quadrupole.
7177  MS_SCION_SQ = 1002295,
7178 
7179  /// SCION TQ: Bruker Daltonics' SCION TQ: GC-triple quadrupole.
7180  MS_SCION_TQ = 1002296,
7181 
7182  /// EVOQ Elite: Bruker Daltonics' EVOQ Elite: LC-triple quadrupole.
7183  MS_EVOQ_Elite = 1002297,
7184 
7185  /// EVOQ Qube: Bruker Daltonics' EVOQ Qube: LC-triple quadrupole.
7186  MS_EVOQ_Qube = 1002298,
7187 
7188  /// micrOTOF-Q III: Bruker Daltonics' micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7190 
7191  /// amaZon Speed ETD: Bruker Daltonics' amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
7193 
7194  /// amaZon Speed: Bruker Daltonics' amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
7195  MS_amaZon_Speed = 1002301,
7196 
7197  /// Bruker Container format: Bruker Container raw file format.
7199 
7200  /// Bruker Container nativeID format: Native identifier (UUID).
7202 
7203  /// domain range: Domain range of a numerical value.
7204  MS_domain_range = 1002304,
7205 
7206  /// value between 0 and 1 inclusive: Value range for probabilities.
7208 
7209  /// value greater than zero: Positive value range.
7211 
7212  /// fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a c ion.
7214 
7215  /// fluorescence detector: A detector using a fluorescent signal after excitation with light.
7217 
7218  /// Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the PSM.
7220 
7221  /// Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probability (PEP) of the protein.
7223 
7224  /// Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior error probability (PEP) of the PSM. The two-dimensional PEP takes into account protein ranking information as well as PSM information.
7226 
7227  /// MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compression.
7229 
7230  /// MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression.
7232 
7233  /// MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compression.
7235 
7236  /// consensus result: Indicates a consensus result from several search engine runs.
7238 
7239  /// ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score.
7241 
7242  /// ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score.
7244 
7245  /// ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level.
7247 
7248  /// Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
7250 
7251  /// ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM.
7253 
7254  /// ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
7256 
7257  /// ProteomeDiscoverer:min peptide length: Minimum peptide length.
7259 
7260  /// ProteomeDiscoverer:max peptide length: Maximum peptide length.
7262 
7263  /// ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
7265 
7266  /// ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifications.
7268 
7269  /// ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
7271 
7272  /// ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per PSM.
7274 
7275  /// ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed.
7277 
7278  /// ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated.
7280 
7281  /// ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer's 3rd static post-translational modification (PTM) input parameter.
7283 
7284  /// ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer's 5th dynamic post-translational modification (PTM) input parameter.
7286 
7287  /// lab head: The scientist responsible for personnel, grants, and instrumentation in a functional laboratory group.
7288  MS_lab_head = 1002332,
7289 
7290  /// conversion software: Computer software primarily designed to convert data represented in one format to another format, sometimes with minor data alterations in the process.
7292 
7293  /// ProCon: Java software designed to convert one of several proteomics identification results formats into mzIdentML or PRIDE XML.
7294  MS_ProCon = 1002334,
7295 
7296  /// PRIDE Converter2: Java software designed to convert one of several proteomics identification results formats into PRIDE XML.
7298 
7299  /// Amanda: Amanda scoring system for PSM identification.
7300  MS_Amanda = 1002336,
7301 
7302  /// Andromeda: Andromeda is a peptide search engine.
7303  MS_Andromeda = 1002337,
7304 
7305  /// Andromeda:score: The probability based score of the Andromeda search engine.
7307 
7308  /// site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modification.
7310 
7311  /// ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the grouping of datasets. One tag can be used for indicating that a given dataset is part of a bigger project, like e.g. the Human Proteome Project.
7313 
7314  /// second-pass peptide identification: A putative identified peptide found in a second-pass search of protein sequences selected from a first-pass search.
7316 
7317  /// MZmine: A framework for differential analysis of mass spectrometry data.
7318  MS_MZmine = 1002342,
7319 
7320  /// ion stability type: Stability type of the ion.
7322 
7323  /// Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework mainly for developers.
7324  MS_Maltcms = 1002344,
7325 
7326  /// PSM-level attribute: Attribute of a single peptide-spectrum match.
7328 
7329  /// protein group-level identification attribute: Protein group level information.
7331 
7332  /// PSM-level identification statistic: Identification confidence metric for a peptide spectrum match.
7334 
7335  /// protein group-level identification statistic: Identification confidence metric for a protein group.
7337 
7338  /// value greater than zero but less than or equal to one: Positive value range less than or equal to 1.
7340 
7341  /// PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches.
7343 
7344  /// PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches.
7346 
7347  /// PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
7349 
7350  /// PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
7352 
7353  /// PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
7355 
7356  /// PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
7358 
7359  /// PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7361 
7362  /// PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all of the components of the specified mass spectrum.
7364 
7365  /// search engine specific peptide sequence-level identification statistic: Search engine specific distinct peptide score.
7367 
7368  /// peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7370 
7371  /// distinct peptide-level FDRScore: mzidLibrary FDRScore for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7373 
7374  /// distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry) specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given peptide, used for integrating results from these distinct pools.
7376 
7377  /// peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespective of mass modifications) has been correctly identified via the referenced PSMs.
7379 
7380  /// search engine specific score for proteins: Search engine specific protein scores.
7382 
7383  /// protein-level local FDR: Estimation of the local false discovery rate of proteins.
7385 
7386  /// FDRScore for proteins: mzidLibrary FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7388 
7389  /// combined FDRScore for proteins: mzidLibrary Combined FDRScore for proteins.
7391 
7392  /// probability for proteins: Probability that a specific protein sequence has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7394 
7395  /// search engine specific score for protein groups: Search engine specific protein group scores.
7397 
7398  /// protein group-level global FDR: Estimation of the global false discovery rate of protein groups.
7400 
7401  /// protein group-level local FDR: Estimation of the local false discovery rate of protein groups.
7403 
7404  /// protein group-level p-value: Estimation of the p-value for protein groups.
7406 
7407  /// protein group-level e-value: Estimation of the e-value for protein groups.
7409 
7410  /// protein group-level q-value: Estimation of the q-value for protein groups.
7412 
7413  /// protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
7415 
7416  /// protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtained for distinct combinations of single, pairs or triplets of search engines making a given PSM, used for integrating results from these distinct pools.
7418 
7419  /// protein group-level probability: Probability that at least one of the members of a group of protein sequences has been correctly identified from the PSM and distinct peptide evidence, and based on the available protein sequences presented to the analysis software.
7421 
7422  /// ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring.
7424 
7425  /// ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring.
7427 
7428  /// ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do not belong to a protein.
7430 
7431  /// false localization rate: Estimation of the false localization rate for modification site assignment.
7433 
7434  /// MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting.
7436 
7437  /// Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
7439 
7440  /// SCiLS software: SCiLS software for data acquisition and analysis.
7442 
7443  /// SCiLS Lab: SCiLS Lab software.
7444  MS_SCiLS_Lab = 1002384,
7445 
7446  /// SCiLS Lab format: SCiLS Lab file format.
7448 
7449  /// preprocessing software: Preprocessing software.
7451 
7452  /// PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis.
7453  MS_PIA = 1002387,
7454 
7455  /// PIA XML format: A compilation of search engine results in the PIA XML format.
7457 
7458  /// PIA workflow parameter: A parameter set for a single PIA analysis.
7460 
7461  /// PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file.
7463 
7464  /// PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA compilation.
7466 
7467  /// PIA:PSM sets created: Indicates whether PSM sets were created.
7469 
7470  /// PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR calculation, 0 means all.
7472 
7473  /// PIA:protein score: The score given to a protein by any protein inference.
7475 
7476  /// PIA:protein inference: The used algorithm for the protein inference using PIA.
7478 
7479  /// PIA:protein inference filter: A filter used by PIA for the protein inference.
7481 
7482  /// PIA:protein inference scoring: The used scoring method for the protein inference using PIA.
7484 
7485  /// PIA:protein inference used score: The used base score for the protein inference using PIA.
7487 
7488  /// PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inference.
7490 
7491  /// PIA:filter: A filter used for the report generation.
7492  MS_PIA_filter = 1002400,
7493 
7494  /// leading protein: At least one protein within each group should be annotated as a leading protein to indicate it has the strongest evidence, or approximately equal evidence as other group members.
7496 
7497  /// non-leading protein: Zero to many proteins within each group should be annotated as non-leading to indicate that other proteins have stronger evidence.
7499 
7500  /// group representative: An arbitrary and optional flag applied to exactly one protein per group to indicate it can serve as the representative of the group, amongst leading proteins, in effect serving as a tiebreaker for approaches that require exactly one group representative.
7502 
7503  /// count of identified proteins: The number of proteins that have been identified, which must match the number of groups that pass the threshold in the file.
7505 
7506  /// protein group-level result list attribute: Details describing a protein cluster.
7508 
7509  /// count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7511 
7512  /// cluster identifier: An identifier applied to protein groups to indicate that they are linked by shared peptides.
7514 
7515  /// number of distinct protein sequences: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
7517 
7518  /// marginally distinguished protein: Assigned to a non-leading protein that has some independent evidence to support its presence relative to the leading protein(s), e.g. the protein may have a unique peptide but not sufficient to be promoted as a leading protein of another group.
7520 
7521  /// Anubis: Anubis software for selected reaction monitoring data.
7522  MS_Anubis = 1002410,
7523 
7524  /// TraML format: The TraML format for transitions in SRM from the PSI. File extension '.TraML'.
7525  MS_TraML_format = 1002411,
7526 
7527  /// total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e.g. of all the transitions in SRM).
7529 
7530  /// product background: The background area for the quantified transition.
7532 
7533  /// postprocessing software: Postprocessing software.
7535 
7536  /// protein group passes threshold: A Boolean attribute to determine whether the protein group has passed the threshold indicated in the file.
7538 
7539  /// Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
7541 
7542  /// Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
7544 
7545  /// TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
7546  MS_TSQ_Quantiva = 1002418,
7547 
7548  /// TSQ Endura: Thermo Scientific TSQ Endura MS.
7549  MS_TSQ_Endura = 1002419,
7550 
7551  /// PASSEL experiment URI: URI that allows access to a PASSEL experiment.
7553 
7554  /// Paragon input parameter: Search engine input parameters specific to Paragon.
7556 
7557  /// Paragon: sample type: The Paragon method setting indicating the type of sample at the high level, generally meaning the type of quantitation labelling or lack thereof. 'Identification' is indicated for samples without any labels for quantitation.
7559 
7560  /// Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation agent; 'None' is indicated if there was no cysteine alkylation.
7562 
7563  /// Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level settings) indicating the instrument used or a category of instrument.
7565 
7566  /// Paragon: search effort: The Paragon method setting that controls the two major modes of search effort of the Paragon algorithm: the Rapid mode uses a conventional database search, while the Thorough mode uses a hybrid search, starting with the same approach as the Rapid mode but then follows it with a separate tag-based approach enabling a more extensive search.
7568 
7569  /// Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such as biological modification or substitutions.
7571 
7572  /// Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted.
7574 
7575  /// Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is conducted.
7577 
7578  /// Paragon: background correction: The Paragon method setting that controls whether the 'Background Correction' analysis is conducted; this processing estimates a correction to the attenuation in extremity ratios that can occur in isobaric quantatitation workflows on complex samples.
7580 
7581  /// Paragon: bias correction: The Paragon method setting that controls whether 'Bias Correction' is invoked in quantitation analysis; this correction is a normalization to set the central tendency of protein ratios to unity.
7583 
7584  /// Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which label channel is used as the denominator in calculating relative expression ratios.
7586 
7587  /// search engine specific input metadata: Search engine specific metadata that are not user-controlled settings.
7589 
7590  /// Paragon: modified data dictionary or parameter translation: This metric detects if any changes have been made to the originally installed key control files for the software; if no changes have been made, then the software version and settings are sufficient to enable exact reproduction; if changes have been made, then the modified ParameterTranslation- and ProteinPilot DataDictionary-XML files much also be provided in order to exactly reproduce a result.
7592 
7593  /// number of spectra searched: Number of spectra in a search.
7595 
7596  /// data processing start time: The time that a data processing action was started.
7598 
7599  /// Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other search tools, this setting does not include options that control partial specificity like 'semitrypsin'; if trypsin is used, trypsin is set, and partially conforming peptides are found in the Thorough mode of search; 'None' should be indicated only if there was really no digestion done.
7601 
7602  /// number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach is used.
7604 
7605  /// spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificationList).
7607 
7608  /// final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the final set of identifications to be interpreted by consuming software. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum must not be referenced from more than one SpectrumIdentificationResult.
7610 
7611  /// intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is not the final set of identifications to be interpreted by consuming software. This term should be used when results are provided from multiple search engines for the results from each search engine before they are combined to give consensus identifications. Amongst the set of SpectrumIdentificationList(s) that are flagged with the term, each spectrum may be referenced from more than one SpectrumIdentificationResult.
7613 
7614  /// Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data.
7616 
7617  /// chromatograph file format: The format of the chromatography file being used. This could be a instrument or vendor specific proprietary file format or a converted open file format.
7619 
7620  /// Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data.
7622 
7623  /// 6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer.
7625 
7626  /// 6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds Agilent Jet Stream (AJS) technology to increase sensitivity.
7628 
7629  /// 6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography instrument combined with a Agilent triple quadrupole mass spectrometer. It is similar to the 6420 but adds the Agilent iFunnel technology to increase sensitivity.
7631 
7632  /// Paragon:special factor: The Paragon method setting indicating a list of one or more 'special factors', which generally capture secondary effects (relative to other settings) as a set of probabilities of modification features that override the assumed levels. For example the 'gel-based ID' special factor causes an increase probability of oxidation on several resides because of the air exposure impact on a gel, in addition to other effects.
7634 
7635  /// PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
7637 
7638  /// PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
7640 
7641  /// param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
7643 
7644  /// param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
7646 
7647  /// Maui: The Maltcms Graphical User Interface.
7648  MS_Maui = 1002452,
7649 
7650  /// No fixed modifications searched: No fixed modifications are included as a parameter for the search, and therefore they are not reported.
7652 
7653  /// No variable modifications searched: No variable modifications are included as a parameter for the search, and therefore they are not reported.
7655 
7656  /// H2O neutral loss: Neutral loss of water.
7658 
7659  /// NH3 neutral loss: Neutral loss of ammonia.
7661 
7662  /// H3PO4 neutral loss: Neutral loss of phosphoric acid.
7664 
7665  /// PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification results.
7666  MS_PeptideShaker = 1002458,
7667 
7668  /// MS Amanda csv format: MS Amanda csv output format.
7670 
7671  /// protein group-level global FNR: Estimation of the global false negative rate of protein groups.
7673 
7674  /// protein group-level confidence: Estimation of the global confidence of protein groups.
7676 
7677  /// peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7679 
7680  /// peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides once redundant identifications of the same peptide have been removed (id est multiple PSMs have been collapsed to one entry).
7682 
7683  /// PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches.
7685 
7686  /// PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches.
7688 
7689  /// PeptideShaker PSM score: The probability based PeptideShaker PSM score.
7691 
7692  /// PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence.
7694 
7695  /// PeptideShaker peptide score: The probability based PeptideShaker peptide score.
7697 
7698  /// PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
7700 
7701  /// PeptideShaker protein group score: The probability based PeptideShaker protein group score.
7703 
7704  /// PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence.
7706 
7707  /// trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a trap-type collision cell.
7709 
7710  /// ion series considered in search: The description of the ion fragment series (including charges and neutral losses) that are considered by the search engine.
7712 
7713  /// ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped only to non-canonical gene models within the group.
7715 
7716  /// ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to non-canonical gene models only within the group.
7718 
7719  /// ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass spectrometer. This time might refer to the central value of a bin into which all ions within a narrow range of drift time have been aggregated.
7721 
7722  /// mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time values, corresponding to spectrum of individual peaks encoded with an m/z array.
7724 
7725  /// mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean of the charges of individual peaks that are aggregated into a processed spectrum.
7727 
7728  /// regular expression: Regular expression.
7730 
7731  /// regular expression for a digital object identifier (DOI): (10[.][0-9]\{4,\}(?:[.][0-9]+)*/(?:(?![\"&\'<>])[^ \t\\r\n\\v\\f])+)
7733 
7734  /// higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
7736 
7737  /// statistical threshold: Estimated statistical threshold.
7739 
7740  /// PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
7742 
7743  /// peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
7745 
7746  /// protein-level statistical threshold: Estimated statistical threshold at protein-level.
7748 
7749  /// protein group-level statistical threshold: Estimated statistical threshold at protein group-level.
7751 
7752  /// MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7754 
7755  /// MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
7757 
7758  /// special processing: Details describing a special processing.
7760 
7761  /// peptide-level scoring: Peptide-level scoring performed.
7763 
7764  /// modification localization scoring: Modification localization scoring performed.
7766 
7767  /// consensus scoring: Consensus multiple search engine approach performed.
7769 
7770  /// sample pre-fractionation: Sample pre-fractionation performed.
7772 
7773  /// cross-linking search: Cross-linking search performed.
7775 
7776  /// no special processing: No special processing performed.
7778 
7779  /// group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
7781 
7782  /// group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifications into account.
7784 
7785  /// group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with taking modifications and charge into account.
7787 
7788  /// peptide level score: Peptide level score.
7790 
7791  /// peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the threshold indicated in the file.
7793 
7794  /// no PSM threshold: Indicating that no PSM threshold was used.
7796 
7797  /// no peptide-level threshold: Indicating that no peptide-level threshold was used.
7799 
7800  /// PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring.
7802 
7803  /// modification index: The order of modifications to be referenced elsewhere in the document.
7805 
7806  /// regular expression for modification localization scoring: ([:digit:]+:[0|1]\{1\}.[:digit:]+[Ee]{0,1}[+-]{0,1}[:digit:]*:[:digit:]+[|]\{1\}[:digit:]+:(true|false)\{1\})
7808 
7809  /// modification position score: Modification position score.
7811 
7812  /// modification rescoring:false localization rate: Mod position score: false localization rate.
7814 
7815  /// cross-linking attribute: Cross-linking attribute.
7817 
7818  /// cross-link donor: The Cross-linking donor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7820 
7821  /// cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export software SHOULD use the following rules to choose the cross-link donor as the: longer peptide, then higher peptide neutral mass, then alphabetical order.
7823 
7824  /// cross-link spectrum identification item: Cross-linked spectrum identification item.
7826 
7827  /// cross-linking score: Cross-linking scoring value.
7829 
7830  /// molecules per cell: The absolute abundance of protein in a cell.
7832 
7833  /// absolute quantitation analysis: Absolute quantitation analysis.
7835 
7836  /// internal peptide reference used: States whether an internal peptide reference is used or not in absolute quantitation analysis.
7838 
7839  /// internal protein reference used: States whether an internal protein reference is used or not in absolute quantitation analysis.
7841 
7842  /// internal reference abundance: The absolute abundance of the spiked in reference peptide or protein used for absolute quantitation analysis.
7844 
7845  /// Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups produced by Progenesis LC-MS.
7847 
7848  /// Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Progenesis LC-MS.
7850 
7851  /// peptide group ID: Peptide group identifier for peptide-level stats.
7853 
7854  /// mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved manner. This is typically achieved by scanning a laser or primary ion beam over a sample and acquiring a mass spectrum at each position.
7856 
7857  /// ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational modifications (PTMs).
7859 
7860  /// Q Exactive HF: Thermo Scientific Q Exactive.
7861  MS_Q_Exactive_HF = 1002523,
7862 
7863  /// PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
7864  MS_PepFinder = 1002524,
7865 
7866  /// TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
7867  MS_TSQ_8000_Evo = 1002525,
7868 
7869  /// Exactive Plus: Thermo Scientific Exactive Plus MS.
7870  MS_Exactive_Plus = 1002526,
7871 
7872  /// instrument specific scan attribute: Instrument specific scan properties that are associated with a value.
7874 
7875  /// synchronous prefilter selection: Synchronous prefilter selection.
7877 
7878  /// SPS (synchronous prefilter selection): Synchronous prefilter selection.
7880 
7881  /// resolution array: A data array of resolution values.
7883 
7884  /// baseline array: A data array of signal baseline values (the signal in the absence of analytes).
7886 
7887  /// UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an intermediate analysis of ion-mobility mass spectrometry data.
7888  MS_UIMF_format = 1002531,
7889 
7890  /// UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteger frameType=xsd:nonNegativeInteger.
7892 
7893  /// TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer.
7895 
7896  /// ProLuCID:xcorr: The ProLuCID result 'XCorr'.
7898 
7899  /// ProLuCID:deltacn: The ProLuCID result 'DeltaCn'.
7901 
7902  /// D-Score: D-Score for PTM site location at the PSM-level.
7903  MS_D_Score = 1002536,
7904 
7905  /// MD-Score: MD-Score for PTM site location at the PSM-level.
7906  MS_MD_Score = 1002537,
7907 
7908  /// PTM localization confidence metric: Localization confidence metric for a post translational modification (PTM).
7910 
7911  /// PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizations.
7913 
7914  /// PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM's.
7916 
7917  /// PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide identifications.
7919 
7920  /// PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein identifications.
7922 
7923  /// xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
7924  MS_xiFDR = 1002543,
7925 
7926  /// xi: Search engine for cross-linked peptides.
7927  MS_xi = 1002544,
7928 
7929  /// xi:score: The xi result 'Score'.
7930  MS_xi_score = 1002545,
7931 
7932  /// Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
7934 
7935  /// normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
7937 
7938  /// distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor (dNSAF.
7940 
7941  /// PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localization of an amino acid modification on a peptide sequence.
7943 
7944  /// peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
7946 
7947  /// peptide:Ascore: A-score for PTM site location at the peptide-level.
7949 
7950  /// peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
7952 
7953  /// peptide:D-Score: D-Score for PTM site location at the peptide-level.
7955 
7956  /// peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
7958 
7959  /// PTM localization score threshold: Threshold for PTM site location score.
7961 
7962  /// Ascore threshold: Threshold for Ascore PTM site location score.
7964 
7965  /// D-Score threshold: Threshold for D-score PTM site location score.
7967 
7968  /// MD-Score threshold: Threshold for MD-score PTM site location score.
7970 
7971  /// H-Score threshold: Threshold for H-score PTM site location score.
7973 
7974  /// DeBunker:score threshold: Threshold for DeBunker PTM site location score.
7976 
7977  /// Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence.
7979 
7980  /// MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
7982 
7983  /// MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
7985 
7986  /// MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probability.
7988 
7989  /// MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
7991 
7992  /// MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities.
7994 
7995  /// phosphoRS score threshold: Threshold for phosphoRS score.
7997 
7998  /// phosphoRS site probability threshold: Threshold for phosphoRS site probability.
8000 
8001  /// ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a ProteomeDiscoverer search.
8003 
8004  /// sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same, or a subset of, the matched peptide sequences for two or more other proteins combined. These other proteins need not all be in the same group.
8006 
8007  /// spectrum multiply subsumable protein: A protein for which the matched spectra are the same, or a subset of, the matched spectra for two or more other proteins combined. These other proteins need not all be in the same group.
8009 
8010  /// protein detection statistical threshold: Estimated statistical threshold used for protein detection.
8012 
8013  /// spectrum identification statistical threshold: Estimated statistical threshold used for spectrum identification.
8015 
8016  /// ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2-channel isotope-labelled data such as ICAT, SILAC, etc.
8017  MS_ASAPRatio = 1002574,
8018 
8019  /// Tide: Tide open-source sequence search program developed at the University of Washington.
8020  MS_Tide = 1002575,
8021 
8022  /// Andromeda result file: Andromeda result file output format.
8024 
8025  /// 2000 QTRAP: SCIEX 2000 QTRAP.
8026  MS_2000_QTRAP = 1002577,
8027 
8028  /// 2500 QTRAP: SCIEX 2500 QTRAP.
8029  MS_2500_QTRAP = 1002578,
8030 
8031  /// 3500 QTRAP: SCIEX 3500 QTRAP.
8032  MS_3500_QTRAP = 1002579,
8033 
8034  /// QTRAP 4500: SCIEX QTRAP 4500.
8035  MS_QTRAP_4500 = 1002580,
8036 
8037  /// QTRAP 6500: SCIEX QTRAP 6500.
8038  MS_QTRAP_6500 = 1002581,
8039 
8040  /// QTRAP 6500+: SCIEX QTRAP 6500+.
8041  MS_QTRAP_6500_ = 1002582,
8042 
8043  /// TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
8045 
8046  /// TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
8048 
8049  /// API 100: Applied Biosystems/MDS SCIEX API 100 MS.
8050  MS_API_100 = 1002585,
8051 
8052  /// API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
8053  MS_API_100LC = 1002586,
8054 
8055  /// API 165: Applied Biosystems/MDS SCIEX API 165 MS.
8056  MS_API_165 = 1002587,
8057 
8058  /// API 300: Applied Biosystems/MDS SCIEX API 300 MS.
8059  MS_API_300 = 1002588,
8060 
8061  /// API 350: Applied Biosystems/MDS SCIEX API 350 MS.
8062  MS_API_350 = 1002589,
8063 
8064  /// API 365: Applied Biosystems/MDS SCIEX API 365 MS.
8065  MS_API_365 = 1002590,
8066 
8067  /// Triple Quad 3500: SCIEX Triple Quad 3500.
8069 
8070  /// Triple Quad 4500: SCIEX Triple Quad 4500.
8072 
8073  /// Triple Quad 5500: SCIEX Triple Quad 5500.
8075 
8076  /// Triple Quad 6500: SCIEX Triple Quad 6500.
8078 
8079  /// Triple Quad 6500+: SCIEX Triple Quad 6500+.
8081 
8082  /// ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps Research Institute.
8083  MS_ProLuCID = 1002596,
8084 
8085  /// MS1 format: MS1 file format for MS1 spectral data.
8086  MS_MS1_format = 1002597,
8087 
8088  /// DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highlight the most significant matches.
8089  MS_DTASelect = 1002598,
8090 
8091  /// splash key: The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier for chemical compounds.
8092  MS_splash_key = 1002599,
8093 
8094  /// PRIDE XML: Internal data and submission format of the PRIDE database.
8095  MS_PRIDE_XML = 1002600,
8096 
8097  /// mzTab: Tabular result format for proteomics and metabolomics experiments.
8098  MS_mzTab = 1002601,
8099 
8100  /// quantification reagent: Reagent used in labeled quantification methods.
8102 
8103  /// ICAT reagent: Isotope coded affinity tag reagent.
8104  MS_ICAT_reagent = 1002603,
8105 
8106  /// ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
8108 
8109  /// ICAT light reagent: The name of the sample labelled with the light ICAT label.
8111 
8112  /// ICPL reagent: Isotope coded protein labeling reagent.
8113  MS_ICPL_reagent = 1002606,
8114 
8115  /// ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
8117 
8118  /// ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
8120 
8121  /// ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
8123 
8124  /// ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
8126 
8127  /// SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
8128  MS_SILAC_reagent = 1002611,
8129 
8130  /// SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
8132 
8133  /// SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
8135 
8136  /// SILAC light reagent: The name of the sample labelled with the light SILAC label.
8138 
8139  /// TMT reagent: Tandem mass tag reagent.
8140  MS_TMT_reagent = 1002615,
8141 
8142  /// TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
8144 
8145  /// TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
8147 
8148  /// TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
8150 
8151  /// TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
8153 
8154  /// TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
8156 
8157  /// TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
8159 
8160  /// iTRAQ reagent: Isobaric tag for relative and absolute quantitation reagent.
8161  MS_iTRAQ_reagent = 1002622,
8162 
8163  /// iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
8165 
8166  /// iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
8168 
8169  /// iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
8171 
8172  /// iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
8174 
8175  /// iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
8177 
8178  /// iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
8180 
8181  /// iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
8183 
8184  /// iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
8186 
8187  /// Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8189 
8190  /// EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combining electron-transfer and higher-energy collision dissociation (EThcD). It combines ETD (reaction time) followed by HCD (activation energy).
8192 
8193  /// jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8195 
8196  /// jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
8198 
8199  /// Q Exactive Plus: Thermo Scientific Q Exactive Plus.
8201 
8202  /// proteogenomics search: Proteogenomics search performed.
8204 
8205  /// proteogenomics attribute: Proteogenomics attribute.
8207 
8208  /// chromosome name: The name or number of the chromosome to which a given peptide has been mapped.
8210 
8211  /// chromosome strand: The strand (+ or -) to which the peptide has been mapped.
8213 
8214  /// peptide start on chromosome: The overall start position on the chromosome to which a peptide has been mapped i.e. the position of the first base of the first codon, using a zero-based counting system.
8216 
8217  /// peptide end on chromosome: The overall end position on the chromosome to which a peptide has been mapped i.e. the position of the third base of the last codon, using a zero-based counting system.
8219 
8220  /// peptide exon count: The number of exons to which the peptide has been mapped.
8222 
8223  /// peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to which a peptide has been mapped. Assuming standard operation of a search engine, the peptide exon sizes should sum to exactly three times the peptide length.
8225 
8226  /// peptide start positions on chromosome: A comma separated list of start positions within exons to which the peptide has been mapped, relative to peptide-chromosome start, assuming a zero-based counting system. The first value MUST match the value in peptide start on chromosome.
8228 
8229  /// genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference.
8231 
8232  /// MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass spectrometry data.
8233  MS_MSDK = 1002645,
8234 
8235  /// native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8237 
8238  /// nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes how the native spectrum identifiers that have been combined prior to searching or interpretation are formated.
8240 
8241  /// Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combined prior to searching or interpretation.
8243 
8244  /// Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combined prior to searching or interpretation.
8246 
8247  /// WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined prior to searching or interpretation.
8249 
8250  /// Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra that have been combined prior to searching or interpretation.
8252 
8253  /// Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have been combined prior to searching or interpretation.
8255 
8256  /// Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have been combined prior to searching or interpretation.
8258 
8259  /// multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8261 
8262  /// single peak list nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8264 
8265  /// scan number only nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8267 
8268  /// spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8270 
8271  /// mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined prior to searching or interpretation.
8273 
8274  /// identification parameter: Identification parameter for the search engine run.
8276 
8277  /// UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
8279 
8280  /// UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
8282 
8283  /// Morpheus: Morpheus search engine.
8284  MS_Morpheus = 1002661,
8285 
8286  /// Morpheus:Morpheus score: Morpheus score for PSMs.
8288 
8289  /// Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
8291 
8292  /// interaction score derived from cross-linking: Parent term for interaction scores derived from cross-linking.
8294 
8295  /// regular expression for interaction scores derived from cross-linking: ([:digit:]+[.][a|b]:([:digit:]+|null):[:digit:]+[.][:digit:]+([Ee][+-][0-9]+)*:(true|false]\{1\}))
8297 
8298  /// impact II: Bruker Daltonics' impact II.
8299  MS_impact_II = 1002666,
8300 
8301  /// impact HD: Bruker Daltonics' impact HD.
8302  MS_impact_HD = 1002667,
8303 
8304  /// frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integer mass of the iTRAQ 4Plex reporter ion, e.g. 114.
8306 
8307  /// frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integer mass of the iTRAQ 8Plex reporter ion, e.g. 113.
8309 
8310  /// frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the TMT reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127N.
8312 
8313  /// frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot holds the integer mass of the TMT ETD reporter ion and can be suffixed with either N or C, indicating whether the mass difference is encoded at a Nitrogen or Carbon atom, e.g. 127C.
8315 
8316  /// no modification threshold: No statistical threshold for accepting or rejecting that a modification position.
8318 
8319  /// OpenXQuest: Cross-Linking MS search engine.
8320  MS_OpenXQuest = 1002673,
8321 
8322  /// X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
8323  MS_X500R_QTOF = 1002674,
8324 
8325  /// cross-linking result details: This subsection describes terms which can describe details of cross-linking results.
8327 
8328  /// protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cross-linking experiments.
8330 
8331  /// residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cross-linking experiments.
8333 
8334  /// supplemental higher energy beam-type collision-induced dissociation: A supplemental collision-induced dissociation process wherein the projectile ion has the translational energy higher than approximately 1000 eV.
8336 
8337  /// supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisional excitation.
8339 
8340  /// supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationary gas particle resulting in dissociation of the ion.
8342 
8343  /// OpenXQuest:combined score: OpenXQuest's combined score for a cross-link spectrum match.
8345 
8346  /// OpenXQuest:xcorr xlink: OpenXQuest's cross-correlation of cross-linked ions subscore.
8348 
8349  /// OpenXQuest:xcorr common: OpenXQuest's cross-correlation of unlinked ions subscore.
8351 
8352  /// OpenXQuest:match-odds: OpenXQuest's match-odds subscore.
8354 
8355  /// OpenXQuest:intsum: OpenXQuest's sum of matched peak intensity subscore.
8357 
8358  /// OpenXQuest:wTIC: OpenXQuest's weighted percent of total ion current subscore.
8360 
8361  /// analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis.
8363 
8364  /// PTM localization attribute: Statistic derived from a post-translational modification localization analysis.
8366 
8367  /// PTM localization single result statistic: Statistic for a single item derived from a post-translational modification localization analysis.
8369 
8370  /// PTM localization result list statistic: Statistic for all items derived from a post-translational modification localization analysis.
8372 
8373  /// global FLR: Global false localization rate for all localizations in a dataset.
8374  MS_global_FLR = 1002691,
8375 
8376  /// local FLR at threshold: Local false localization rate for the bottom item in list of localizations sorted from most to least confident.
8378 
8379  /// identification attribute: Attribute of an identification item in the result of mass spectrometry proteomics data analysis.
8381 
8382  /// single identification result attribute: Attribute of a single identification item (as opposed to a list) in the result of mass spectrometry proteomics data analysis.
8384 
8385  /// frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
8387 
8388  /// secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak. This is used in conjuction with another ion type, such as frag: y ion.
8390 
8391  /// protein cluster identification attribute: An attribute of the protein cluster concept as used in mzIdentML.
8393 
8394  /// result list attribute: General property of an entire result list.
8396 
8397  /// PSM-level result list attribute: General property of the list of all PSMs.
8399 
8400  /// PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
8402 
8403  /// peptide sequence-level result list attribute: General property of all peptide sequences in the list.
8405 
8406  /// peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the list.
8408 
8409  /// protein-level result list attribute: Attribute of an entire protein list.
8411 
8412  /// protein-level result list statistic: A statistical metric of an entire protein list.
8414 
8415  /// protein group-level result list statistic: Attrbiute of an entire list of protein groups.
8417 
8418  /// unimod root node: The root node of the unimod modifications ontology.
8420 
8421  /// Acetyl: Acetylation.
8422  UNIMOD_Acetyl = 100000001,
8423 
8424  /// Amidated: Amidation.
8425  UNIMOD_Amidated = 100000002,
8426 
8427  /// Biotin: Biotinylation.
8428  UNIMOD_Biotin = 100000003,
8429 
8430  /// Carbamidomethyl: Iodoacetamide derivative.
8432 
8433  /// Carbamyl: Carbamylation.
8434  UNIMOD_Carbamyl = 100000005,
8435 
8436  /// Carboxymethyl: Iodoacetic acid derivative.
8438 
8439  /// Deamidated: Deamidation.
8440  UNIMOD_Deamidated = 100000007,
8441 
8442  /// ICAT-G: Gygi ICAT(TM) d0.
8443  UNIMOD_ICAT_G = 100000008,
8444 
8445  /// ICAT-G:2H(8): Gygi ICAT(TM) d8.
8446  UNIMOD_ICAT_G_2H_8_ = 100000009,
8447 
8448  /// Met->Hse: Homoserine.
8449  UNIMOD_Met__Hse = 100000010,
8450 
8451  /// Met->Hsl: Homoserine lactone.
8452  UNIMOD_Met__Hsl = 100000011,
8453 
8454  /// ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
8455  UNIMOD_ICAT_D_2H_8_ = 100000012,
8456 
8457  /// ICAT-D: Applied Biosystems original ICAT(TM) d0.
8458  UNIMOD_ICAT_D = 100000013,
8459 
8460  /// NIPCAM: N-isopropylcarboxamidomethyl.
8461  UNIMOD_NIPCAM = 100000017,
8462 
8463  /// PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
8465 
8466  /// Phospho: Phosphorylation.
8467  UNIMOD_Phospho = 100000021,
8468 
8469  /// Dehydrated: Dehydration.
8470  UNIMOD_Dehydrated = 100000023,
8471 
8472  /// Propionamide: Acrylamide adduct.
8473  UNIMOD_Propionamide = 100000024,
8474 
8475  /// Pyridylacetyl: Pyridylacetyl.
8477 
8478  /// Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
8480 
8481  /// Glu->pyro-Glu: Pyro-glu from E.
8483 
8484  /// Gln->pyro-Glu: Pyro-glu from Q.
8486 
8487  /// SMA: N-Succinimidyl-2-morpholine acetate.
8488  UNIMOD_SMA = 100000029,
8489 
8490  /// Cation:Na: Sodium adduct.
8491  UNIMOD_Cation_Na = 100000030,
8492 
8493  /// Pyridylethyl: S-pyridylethylation.
8494  UNIMOD_Pyridylethyl = 100000031,
8495 
8496  /// Methyl: Methylation.
8497  UNIMOD_Methyl = 100000034,
8498 
8499  /// Oxidation: Oxidation or Hydroxylation.
8500  UNIMOD_Oxidation = 100000035,
8501 
8502  /// Dimethyl: Di-Methylation.
8503  UNIMOD_Dimethyl = 100000036,
8504 
8505  /// Trimethyl: Tri-Methylation.
8506  UNIMOD_Trimethyl = 100000037,
8507 
8508  /// Methylthio: Beta-methylthiolation.
8509  UNIMOD_Methylthio = 100000039,
8510 
8511  /// Sulfo: O-Sulfonation.
8512  UNIMOD_Sulfo = 100000040,
8513 
8514  /// Hex: Hexose.
8515  UNIMOD_Hex = 100000041,
8516 
8517  /// Lipoyl: Lipoyl.
8518  UNIMOD_Lipoyl = 100000042,
8519 
8520  /// HexNAc: N-Acetylhexosamine.
8521  UNIMOD_HexNAc = 100000043,
8522 
8523  /// Farnesyl: Farnesylation.
8524  UNIMOD_Farnesyl = 100000044,
8525 
8526  /// Myristoyl: Myristoylation.
8527  UNIMOD_Myristoyl = 100000045,
8528 
8529  /// PyridoxalPhosphate: Pyridoxal phosphate.
8531 
8532  /// Palmitoyl: Palmitoylation.
8533  UNIMOD_Palmitoyl = 100000047,
8534 
8535  /// GeranylGeranyl: Geranyl-geranyl.
8537 
8538  /// Phosphopantetheine: Phosphopantetheine.
8540 
8541  /// FAD: Flavin adenine dinucleotide.
8542  UNIMOD_FAD = 100000050,
8543 
8544  /// Tripalmitate: N-acyl diglyceride cysteine.
8545  UNIMOD_Tripalmitate = 100000051,
8546 
8547  /// Guanidinyl: Guanidination.
8548  UNIMOD_Guanidinyl = 100000052,
8549 
8550  /// HNE: 4-hydroxynonenal (HNE).
8551  UNIMOD_HNE = 100000053,
8552 
8553  /// Glucuronyl: Hexuronic acid.
8554  UNIMOD_Glucuronyl = 100000054,
8555 
8556  /// Glutathione: Glutathione disulfide.
8557  UNIMOD_Glutathione = 100000055,
8558 
8559  /// Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
8560  UNIMOD_Acetyl_2H_3_ = 100000056,
8561 
8562  /// Propionyl: Propionate labeling reagent light form (N-term & K).
8563  UNIMOD_Propionyl = 100000058,
8564 
8565  /// Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
8567 
8568  /// GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
8569  UNIMOD_GIST_Quat = 100000060,
8570 
8571  /// GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
8573 
8574  /// GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
8576 
8577  /// GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
8579 
8580  /// Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
8581  UNIMOD_Succinyl = 100000064,
8582 
8583  /// Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K.
8585 
8586  /// Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K.
8588 
8589  /// Iminobiotin: Iminobiotinylation.
8590  UNIMOD_Iminobiotin = 100000089,
8591 
8592  /// ESP: ESP-Tag light d0.
8593  UNIMOD_ESP = 100000090,
8594 
8595  /// ESP:2H(10): ESP-Tag heavy d10.
8596  UNIMOD_ESP_2H_10_ = 100000091,
8597 
8598  /// NHS-LC-Biotin: NHS-LC-Biotin.
8600 
8601  /// EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
8603 
8604  /// IMID: IMID d0.
8605  UNIMOD_IMID = 100000094,
8606 
8607  /// IMID:2H(4): IMID d4.
8608  UNIMOD_IMID_2H_4_ = 100000095,
8609 
8610  /// Propionamide:2H(3): Acrylamide d3.
8612 
8613  /// ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
8614  UNIMOD_ICAT_C = 100000105,
8615 
8616  /// ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
8618 
8619  /// FormylMet: Addition of N-formyl met.
8620  UNIMOD_FormylMet = 100000107,
8621 
8622  /// Nethylmaleimide: N-ethylmaleimide on cysteines.
8624 
8625  /// OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
8627 
8628  /// OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
8629  UNIMOD_OxLysBiotin = 100000113,
8630 
8631  /// OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
8633 
8634  /// OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
8635  UNIMOD_OxProBiotin = 100000115,
8636 
8637  /// OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
8638  UNIMOD_OxArgBiotin = 100000116,
8639 
8640  /// OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced.
8642 
8643  /// EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
8645 
8646  /// IBTP: Thio Ether Formation - BTP Adduct.
8647  UNIMOD_IBTP = 100000119,
8648 
8649  /// GG: Ubiquitinylation residue.
8650  UNIMOD_GG = 100000121,
8651 
8652  /// Formyl: Formylation.
8653  UNIMOD_Formyl = 100000122,
8654 
8655  /// ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
8656  UNIMOD_ICAT_H = 100000123,
8657 
8658  /// ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
8660 
8661  /// Thioacyl: 3-sulfanylpropanoyl.
8662  UNIMOD_Thioacyl = 100000126,
8663 
8664  /// Fluoro: Fluorination.
8665  UNIMOD_Fluoro = 100000127,
8666 
8667  /// Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
8668  UNIMOD_Fluorescein = 100000128,
8669 
8670  /// Iodo: Iodination.
8671  UNIMOD_Iodo = 100000129,
8672 
8673  /// Diiodo: Di-Iodination.
8674  UNIMOD_Diiodo = 100000130,
8675 
8676  /// Triiodo: Tri-Iodination.
8677  UNIMOD_Triiodo = 100000131,
8678 
8679  /// Myristoleyl: (cis-delta 5)-tetradecaenoyl.
8680  UNIMOD_Myristoleyl = 100000134,
8681 
8682  /// Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
8684 
8685  /// Benzoyl: Labeling reagent light form (N-term & K).
8686  UNIMOD_Benzoyl = 100000136,
8687 
8688  /// Hex(5)HexNAc(2): N-linked glycan core.
8690 
8691  /// Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
8692  UNIMOD_Dansyl = 100000139,
8693 
8694  /// a-type-ion: ISD a-series (C-Term).
8695  UNIMOD_a_type_ion = 100000140,
8696 
8697  /// Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
8698  UNIMOD_Amidine = 100000141,
8699 
8700  /// HexNAc(1)dHex(1): HexNAc1dHex1.
8702 
8703  /// HexNAc(2): HexNAc2.
8704  UNIMOD_HexNAc_2_ = 100000143,
8705 
8706  /// Hex(3): Hex3.
8707  UNIMOD_Hex_3_ = 100000144,
8708 
8709  /// HexNAc(1)dHex(2): HexNAc1dHex2.
8711 
8712  /// Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
8714 
8715  /// HexNAc(2)dHex(1): HexNAc2dHex1.
8717 
8718  /// Hex(1)HexNAc(2): Hex1HexNAc2.
8720 
8721  /// Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
8723 
8724  /// HexNAc(2)dHex(2): HexNAc2dHex2.
8726 
8727  /// Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
8729 
8730  /// Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
8732 
8733  /// Hex(2)HexNAc(2): Hex2HexNAc2.
8735 
8736  /// Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
8738 
8739  /// Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
8741 
8742  /// Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
8744 
8745  /// Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
8747 
8748  /// Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
8750 
8751  /// Hex(3)HexNAc(2): Hex3HexNAc2.
8753 
8754  /// Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
8756 
8757  /// Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
8759 
8760  /// Delta:S(-1)Se(1): Selenium replaces sulfur.
8762 
8763  /// Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
8765 
8766  /// NBS:13C(6): Shimadzu NBS-13C.
8767  UNIMOD_NBS_13C_6_ = 100000171,
8768 
8769  /// NBS: Shimadzu NBS-12C.
8770  UNIMOD_NBS = 100000172,
8771 
8772  /// BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
8773  UNIMOD_BHT = 100000176,
8774 
8775  /// DAET: Phosphorylation to amine thiol.
8776  UNIMOD_DAET = 100000178,
8777 
8778  /// Label:13C(9): 13C(9) Silac label.
8779  UNIMOD_Label_13C_9_ = 100000184,
8780 
8781  /// Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
8783 
8784  /// HPG: Hydroxyphenylglyoxal arginine.
8785  UNIMOD_HPG = 100000186,
8786 
8787  /// 2HPG: Bis(hydroxphenylglyoxal) arginine.
8788  UNIMOD_2HPG = 100000187,
8789 
8790  /// Label:13C(6): 13C(6) Silac label.
8791  UNIMOD_Label_13C_6_ = 100000188,
8792 
8793  /// Label:18O(2): O18 label at both C-terminal oxygens.
8794  UNIMOD_Label_18O_2_ = 100000193,
8795 
8796  /// AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
8797  UNIMOD_AccQTag = 100000194,
8798 
8799  /// QAT: APTA-d0.
8800  UNIMOD_QAT = 100000195,
8801 
8802  /// QAT:2H(3): APTA d3.
8803  UNIMOD_QAT_2H_3_ = 100000196,
8804 
8805  /// EQAT: EAPTA d0.
8806  UNIMOD_EQAT = 100000197,
8807 
8808  /// EQAT:2H(5): EAPTA d5.
8809  UNIMOD_EQAT_2H_5_ = 100000198,
8810 
8811  /// Dimethyl:2H(4): DiMethyl-CHD2.
8813 
8814  /// Ethanedithiol: EDT.
8816 
8817  /// Delta:H(6)C(6)O(1): Acrolein addition +94.
8819 
8820  /// Delta:H(4)C(3)O(1): Acrolein addition +56.
8822 
8823  /// Delta:H(2)C(3): Acrolein addition +38.
8825 
8826  /// Delta:H(4)C(6): Acrolein addition +76.
8828 
8829  /// Delta:H(8)C(6)O(2): Acrolein addition +112.
8831 
8832  /// NEIAA: N-ethyl iodoacetamide-d0.
8833  UNIMOD_NEIAA = 100000211,
8834 
8835  /// NEIAA:2H(5): N-ethyl iodoacetamide-d5.
8836  UNIMOD_NEIAA_2H_5_ = 100000212,
8837 
8838  /// ADP-Ribosyl: ADP Ribose addition.
8839  UNIMOD_ADP_Ribosyl = 100000213,
8840 
8841  /// iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
8842  UNIMOD_iTRAQ4plex = 100000214,
8843 
8844  /// IGBP: Light IDBEST tag for quantitation.
8845  UNIMOD_IGBP = 100000243,
8846 
8847  /// Crotonaldehyde: Crotonaldehyde.
8849 
8850  /// Delta:H(2)C(2): Acetaldehyde +26.
8852 
8853  /// Delta:H(4)C(2): Acetaldehyde +28.
8855 
8856  /// Delta:H(4)C(3): Propionaldehyde +40.
8858 
8859  /// Label:18O(1): O18 Labeling.
8860  UNIMOD_Label_18O_1_ = 100000258,
8861 
8862  /// Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
8864 
8865  /// Thiophospho: Thiophosphorylation.
8866  UNIMOD_Thiophospho = 100000260,
8867 
8868  /// SPITC: 4-sulfophenyl isothiocyanate.
8869  UNIMOD_SPITC = 100000261,
8870 
8871  /// Label:2H(3): Trideuteration.
8872  UNIMOD_Label_2H_3_ = 100000262,
8873 
8874  /// PET: Phosphorylation to pyridyl thiol.
8875  UNIMOD_PET = 100000264,
8876 
8877  /// Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
8879 
8880  /// Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
8882 
8883  /// Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
8885 
8886  /// Cytopiloyne: Nucleophilic addtion to cytopiloyne.
8887  UNIMOD_Cytopiloyne = 100000270,
8888 
8889  /// Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
8891 
8892  /// CAF: Sulfonation of N-terminus.
8893  UNIMOD_CAF = 100000272,
8894 
8895  /// Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
8896  UNIMOD_Xlink_SSD = 100000273,
8897 
8898  /// Nitrosyl: S-nitrosylation.
8899  UNIMOD_Nitrosyl = 100000275,
8900 
8901  /// AEBS: Aminoethylbenzenesulfonylation.
8902  UNIMOD_AEBS = 100000276,
8903 
8904  /// Ethanolyl: Ethanolation.
8905  UNIMOD_Ethanolyl = 100000278,
8906 
8907  /// Ethyl: Ethylation.
8908  UNIMOD_Ethyl = 100000280,
8909 
8910  /// CoenzymeA: Cysteine modified Coenzyme A.
8911  UNIMOD_CoenzymeA = 100000281,
8912 
8913  /// Methyl:2H(2): Deuterium Methylation of Lysine.
8914  UNIMOD_Methyl_2H_2_ = 100000284,
8915 
8916  /// SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
8918 
8919  /// SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
8921 
8922  /// Trp->Oxolactone: Tryptophan oxidation to oxolactone.
8924 
8925  /// Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
8927 
8928  /// Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
8929  UNIMOD_Biotin_HPDP = 100000290,
8930 
8931  /// Delta:Hg(1): Mercury Mercaptan.
8932  UNIMOD_Delta_Hg_1_ = 100000291,
8933 
8934  /// IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
8935  UNIMOD_IodoU_AMP = 100000292,
8936 
8937  /// CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
8939 
8940  /// IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
8941  UNIMOD_IED_Biotin = 100000294,
8942 
8943  /// dHex: Fucose.
8944  UNIMOD_dHex = 100000295,
8945 
8946  /// Methyl:2H(3): Deuterated methyl ester.
8947  UNIMOD_Methyl_2H_3_ = 100000298,
8948 
8949  /// Carboxy: Carboxylation.
8950  UNIMOD_Carboxy = 100000299,
8951 
8952  /// Bromobimane: Monobromobimane derivative.
8953  UNIMOD_Bromobimane = 100000301,
8954 
8955  /// Menadione: Menadione quinone derivative.
8956  UNIMOD_Menadione = 100000302,
8957 
8958  /// DeStreak: Cysteine mercaptoethanol.
8959  UNIMOD_DeStreak = 100000303,
8960 
8961  /// dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
8963 
8964  /// dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
8966 
8967  /// dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
8969 
8970  /// Hex(3)HexNAc(4): Biantennary (-2 galactose).
8972 
8973  /// Hex(4)HexNAc(4): Biantennary (-1 galactose).
8975 
8976  /// Hex(5)HexNAc(4): Biantennary.
8978 
8979  /// Cysteinyl: Cysteinylation.
8980  UNIMOD_Cysteinyl = 100000312,
8981 
8982  /// Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
8983  UNIMOD_Lys_loss = 100000313,
8984 
8985  /// Nmethylmaleimide: Nmethylmaleimide.
8987 
8988  /// DimethylpyrroleAdduct: 2,5-dimethypyrrole.
8990 
8991  /// Delta:H(2)C(5): MDA adduct +62.
8993 
8994  /// Delta:H(2)C(3)O(1): MDA adduct +54.
8996 
8997  /// Nethylmaleimide+water: Nethylmaleimidehydrolysis.
8999 
9000  /// Xlink:B10621: Bis-N-I-sulfonerahodamine.
9001  UNIMOD_Xlink_B10621 = 100000323,
9002 
9003  /// DTBP: Dimethyl 3,3\'-dithiobispropionimidate.
9004  UNIMOD_DTBP = 100000324,
9005 
9006  /// FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
9007  UNIMOD_FP_Biotin = 100000325,
9008 
9009  /// Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
9011 
9012  /// Methyl:2H(3)13C(1): Monomethylation.
9014 
9015  /// Dimethyl:2H(6)13C(2): Dimethylation.
9017 
9018  /// Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
9020 
9021  /// Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
9023 
9024  /// HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
9026 
9027  /// Methylamine: Michael addition with methylamine.
9028  UNIMOD_Methylamine = 100000337,
9029 
9030  /// Bromo: Bromination.
9031  UNIMOD_Bromo = 100000340,
9032 
9033  /// Amino: Tyrosine oxidation to 2-aminotyrosine.
9034  UNIMOD_Amino = 100000342,
9035 
9036  /// Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
9038 
9039  /// Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
9040  UNIMOD_Arg__GluSA = 100000344,
9041 
9042  /// Trioxidation: Cysteine oxidation to cysteic acid.
9043  UNIMOD_Trioxidation = 100000345,
9044 
9045  /// His->Asn: His->Asn substitution.
9046  UNIMOD_His__Asn = 100000348,
9047 
9048  /// His->Asp: His->Asp substitution.
9049  UNIMOD_His__Asp = 100000349,
9050 
9051  /// Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
9053 
9054  /// Trp->Kynurenin: Tryptophan oxidation to kynurenin.
9056 
9057  /// Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
9059 
9060  /// Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
9062 
9063  /// Nitro: Oxidation to nitro.
9064  UNIMOD_Nitro = 100000354,
9065 
9066  /// probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
9068 
9069  /// Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
9071 
9072  /// Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
9074 
9075  /// Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
9077 
9078  /// Diisopropylphosphate: O-Diisopropylphosphorylation.
9080 
9081  /// Isopropylphospho: O-Isopropylphosphorylation.
9083 
9084  /// ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
9085  UNIMOD_ICPL_13C_6_ = 100000364,
9086 
9087  /// ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
9088  UNIMOD_ICPL = 100000365,
9089 
9090  /// Deamidated:18O(1): Deamidation in presence of O18.
9092 
9093  /// Cys->Dha: Dehydroalanine (from Cysteine).
9094  UNIMOD_Cys__Dha = 100000368,
9095 
9096  /// Pro->Pyrrolidone: Pyrrolidone from Proline.
9098 
9099  /// HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
9100  UNIMOD_HMVK = 100000371,
9101 
9102  /// Arg->Orn: Ornithine from Arginine.
9103  UNIMOD_Arg__Orn = 100000372,
9104 
9105  /// Dehydro: Half of a disulfide bridge.
9106  UNIMOD_Dehydro = 100000374,
9107 
9108  /// Diphthamide: Diphthamide.
9109  UNIMOD_Diphthamide = 100000375,
9110 
9111  /// Hydroxyfarnesyl: Hydroxyfarnesyl.
9113 
9114  /// Diacylglycerol: Diacylglycerol.
9116 
9117  /// Carboxyethyl: Carboxyethyl.
9118  UNIMOD_Carboxyethyl = 100000378,
9119 
9120  /// Hypusine: Hypusine.
9121  UNIMOD_Hypusine = 100000379,
9122 
9123  /// Retinylidene: Retinal.
9124  UNIMOD_Retinylidene = 100000380,
9125 
9126  /// Lys->AminoadipicAcid: Alpha-amino adipic acid.
9128 
9129  /// Cys->PyruvicAcid: Pyruvic acid from N-term cys.
9131 
9132  /// Ammonia-loss: Loss of ammonia.
9133  UNIMOD_Ammonia_loss = 100000385,
9134 
9135  /// Phycocyanobilin: Phycocyanobilin.
9137 
9138  /// Phycoerythrobilin: Phycoerythrobilin.
9140 
9141  /// Phytochromobilin: Phytochromobilin.
9143 
9144  /// Heme: Heme.
9145  UNIMOD_Heme = 100000390,
9146 
9147  /// Molybdopterin: Molybdopterin.
9149 
9150  /// Quinone: Quinone.
9151  UNIMOD_Quinone = 100000392,
9152 
9153  /// Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
9155 
9156  /// GPIanchor: Glycosylphosphatidylinositol.
9157  UNIMOD_GPIanchor = 100000394,
9158 
9159  /// PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
9161 
9162  /// GlycerylPE: Glycerylphosphorylethanolamine.
9163  UNIMOD_GlycerylPE = 100000396,
9164 
9165  /// Triiodothyronine: Triiodo.
9167 
9168  /// Thyroxine: Tetraiodo.
9169  UNIMOD_Thyroxine = 100000398,
9170 
9171  /// Tyr->Dha: Dehydroalanine (from Tyrosine).
9172  UNIMOD_Tyr__Dha = 100000400,
9173 
9174  /// Didehydro: 2-amino-3-oxo-butanoic_acid.
9175  UNIMOD_Didehydro = 100000401,
9176 
9177  /// Cys->Oxoalanine: Oxoalanine.
9179 
9180  /// Ser->LacticAcid: Lactic acid from N-term Ser.
9182 
9183  /// Phosphoadenosine: AMP.
9185 
9186  /// Hydroxycinnamyl: Hydroxycinnamyl.
9188 
9189  /// Glycosyl: Glycosyl-L-hydroxyproline.
9190  UNIMOD_Glycosyl = 100000408,
9191 
9192  /// FMNH: Flavin mononucleotide.
9193  UNIMOD_FMNH = 100000409,
9194 
9195  /// Archaeol: S-diphytanylglycerol diether.
9196  UNIMOD_Archaeol = 100000410,
9197 
9198  /// Phenylisocyanate: Phenyl isocyanate.
9200 
9201  /// Phenylisocyanate:2H(5): D5-phenyl isocyanate.
9203 
9204  /// Phosphoguanosine: Phospho-guanosine.
9206 
9207  /// Hydroxymethyl: Hydroxymethyl.
9209 
9210  /// MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide).
9212 
9213  /// Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
9215 
9216  /// PhosphoUridine: Uridine phosphodiester.
9218 
9219  /// Glycerophospho: Glycerophospho.
9221 
9222  /// Carboxy->Thiocarboxy: Thiocarboxylic acid.
9224 
9225  /// Sulfide: Persulfide.
9226  UNIMOD_Sulfide = 100000421,
9227 
9228  /// PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
9230 
9231  /// Delta:Se(1): Selenyl.
9232  UNIMOD_Delta_Se_1_ = 100000423,
9233 
9234  /// MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
9236 
9237  /// Dioxidation: Dihydroxy.
9238  UNIMOD_Dioxidation = 100000425,
9239 
9240  /// Octanoyl: Octanoyl.
9241  UNIMOD_Octanoyl = 100000426,
9242 
9243  /// PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
9245 
9246  /// PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
9247  UNIMOD_PhosphoHex = 100000429,
9248 
9249  /// Palmitoleyl: Palmitoleyl.
9250  UNIMOD_Palmitoleyl = 100000431,
9251 
9252  /// Cholesterol: Cholesterol ester.
9253  UNIMOD_Cholesterol = 100000432,
9254 
9255  /// Didehydroretinylidene: 3,4-didehydroretinylidene.
9257 
9258  /// CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
9259  UNIMOD_CHDH = 100000434,
9260 
9261  /// Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
9263 
9264  /// Hydroxyheme: Hydroxyheme.
9265  UNIMOD_Hydroxyheme = 100000436,
9266 
9267  /// MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
9268  UNIMOD_MicrocinC7 = 100000437,
9269 
9270  /// Cyano: Cyano.
9271  UNIMOD_Cyano = 100000438,
9272 
9273  /// Diironsubcluster: Hydrogenase diiron subcluster.
9275 
9276  /// Amidino: Amidino.
9277  UNIMOD_Amidino = 100000440,
9278 
9279  /// FMN: O3-(riboflavin phosphoryl).
9280  UNIMOD_FMN = 100000442,
9281 
9282  /// FMNC: S-(4a-FMN).
9283  UNIMOD_FMNC = 100000443,
9284 
9285  /// CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
9286  UNIMOD_CuSMo = 100000444,
9287 
9288  /// Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
9290 
9291  /// Deoxy: Reduction.
9292  UNIMOD_Deoxy = 100000447,
9293 
9294  /// Microcin: Microcin E492 siderophore ester from serine.
9295  UNIMOD_Microcin = 100000448,
9296 
9297  /// Decanoyl: Lipid.
9298  UNIMOD_Decanoyl = 100000449,
9299 
9300  /// Glu: Monoglutamyl.
9301  UNIMOD_Glu = 100000450,
9302 
9303  /// GluGlu: Diglutamyl.
9304  UNIMOD_GluGlu = 100000451,
9305 
9306  /// GluGluGlu: Triglutamyl.
9307  UNIMOD_GluGluGlu = 100000452,
9308 
9309  /// GluGluGluGlu: Tetraglutamyl.
9310  UNIMOD_GluGluGluGlu = 100000453,
9311 
9312  /// HexN: Hexosamine.
9313  UNIMOD_HexN = 100000454,
9314 
9315  /// Xlink:DMP-s: One end of crosslink attached, one end free.
9316  UNIMOD_Xlink_DMP_s = 100000455,
9317 
9318  /// Xlink:DMP: Both ends of crosslink attached to same peptide.
9319  UNIMOD_Xlink_DMP = 100000456,
9320 
9321  /// NDA: Naphthalene-2,3-dicarboxaldehyde.
9322  UNIMOD_NDA = 100000457,
9323 
9324  /// SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
9325  UNIMOD_SPITC_13C_6_ = 100000464,
9326 
9327  /// AEC-MAEC: Aminoethylcysteine.
9328  UNIMOD_AEC_MAEC = 100000472,
9329 
9330  /// TMAB: 4-trimethyllammoniumbutyryl-.
9331  UNIMOD_TMAB = 100000476,
9332 
9333  /// TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
9334  UNIMOD_TMAB_2H_9_ = 100000477,
9335 
9336  /// FTC: Fluorescein-5-thiosemicarbazide.
9337  UNIMOD_FTC = 100000478,
9338 
9339  /// Label:2H(4): 4,4,5,5-D4 Lysine.
9340  UNIMOD_Label_2H_4_ = 100000481,
9341 
9342  /// DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
9343  UNIMOD_DHP = 100000488,
9344 
9345  /// Hep: Heptose.
9346  UNIMOD_Hep = 100000490,
9347 
9348  /// BADGE: Bisphenol A diglycidyl ether derivative.
9349  UNIMOD_BADGE = 100000493,
9350 
9351  /// CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
9352  UNIMOD_CyDye_Cy3 = 100000494,
9353 
9354  /// CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
9355  UNIMOD_CyDye_Cy5 = 100000495,
9356 
9357  /// BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
9358  UNIMOD_BHTOH = 100000498,
9359 
9360  /// IGBP:13C(2): Heavy IDBEST tag for quantitation.
9361  UNIMOD_IGBP_13C_2_ = 100000499,
9362 
9363  /// Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
9365 
9366  /// PyMIC: 3-methyl-2-pyridyl isocyanate.
9367  UNIMOD_PyMIC = 100000501,
9368 
9369  /// LG-lactam-K: Levuglandinyl - lysine lactam adduct.
9370  UNIMOD_LG_lactam_K = 100000503,
9371 
9372  /// LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
9373  UNIMOD_LG_Hlactam_K = 100000504,
9374 
9375  /// LG-lactam-R: Levuglandinyl - arginine lactam adduct.
9376  UNIMOD_LG_lactam_R = 100000505,
9377 
9378  /// LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
9379  UNIMOD_LG_Hlactam_R = 100000506,
9380 
9381  /// Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
9383 
9384  /// Hex(2): Lactosylation.
9385  UNIMOD_Hex_2_ = 100000512,
9386 
9387  /// C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
9388  UNIMOD_C8_QAT = 100000513,
9389 
9390  /// PropylNAGthiazoline: Propyl-1,2-dideoxy-2\'-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\'-thiazoline.
9392 
9393  /// FNEM: Fluorescein-5-maleimide.
9394  UNIMOD_FNEM = 100000515,
9395 
9396  /// Diethyl: Diethylation, analogous to Dimethylation.
9397  UNIMOD_Diethyl = 100000518,
9398 
9399  /// BisANS: 4,4\'-dianilino-1,1\'-binaphthyl-5,5\'-disulfonic acid.
9400  UNIMOD_BisANS = 100000519,
9401 
9402  /// Piperidine: Piperidination.
9403  UNIMOD_Piperidine = 100000520,
9404 
9405  /// Maleimide-PEO2-Biotin: Maleimide-Biotin.
9407 
9408  /// Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
9410 
9411  /// CLIP_TRAQ_2: CLIP_TRAQ_2.
9412  UNIMOD_CLIP_TRAQ_2 = 100000525,
9413 
9414  /// Dethiomethyl: Prompt loss of side chain from oxidised Met.
9415  UNIMOD_Dethiomethyl = 100000526,
9416 
9417  /// Methyl+Deamidated: Deamidation followed by a methylation.
9419 
9420  /// Delta:H(5)C(2): Dimethylation of proline residue.
9422 
9423  /// Cation:K: Replacement of proton by potassium.
9424  UNIMOD_Cation_K = 100000530,
9425 
9426  /// Cation:Cu[I]: Replacement of proton by copper.
9427  UNIMOD_Cation_Cu_I_ = 100000531,
9428 
9429  /// iTRAQ4plex114: Accurate mass for 114.
9431 
9432  /// iTRAQ4plex115: Accurate mass for 115.
9434 
9435  /// Dibromo: Dibromo.
9436  UNIMOD_Dibromo = 100000534,
9437 
9438  /// LRGG: Ubiquitination.
9439  UNIMOD_LRGG = 100000535,
9440 
9441  /// CLIP_TRAQ_3: CLIP_TRAQ_3.
9442  UNIMOD_CLIP_TRAQ_3 = 100000536,
9443 
9444  /// CLIP_TRAQ_4: CLIP_TRAQ_4.
9445  UNIMOD_CLIP_TRAQ_4 = 100000537,
9446 
9447  /// Biotin:Cayman-10141: Was 15dB-biotin.
9449 
9450  /// Biotin:Cayman-10013: Was PGA1-biotin.
9452 
9453  /// Ala->Ser: Ala->Ser substitution.
9454  UNIMOD_Ala__Ser = 100000540,
9455 
9456  /// Ala->Thr: Ala->Thr substitution.
9457  UNIMOD_Ala__Thr = 100000541,
9458 
9459  /// Ala->Asp: Ala->Asp substitution.
9460  UNIMOD_Ala__Asp = 100000542,
9461 
9462  /// Ala->Pro: Ala->Pro substitution.
9463  UNIMOD_Ala__Pro = 100000543,
9464 
9465  /// Ala->Gly: Ala->Gly substitution.
9466  UNIMOD_Ala__Gly = 100000544,
9467 
9468  /// Ala->Glu: Ala->Glu substitution.
9469  UNIMOD_Ala__Glu = 100000545,
9470 
9471  /// Ala->Val: Ala->Val substitution.
9472  UNIMOD_Ala__Val = 100000546,
9473 
9474  /// Cys->Phe: Cys->Phe substitution.
9475  UNIMOD_Cys__Phe = 100000547,
9476 
9477  /// Cys->Ser: Cys->Ser substitution.
9478  UNIMOD_Cys__Ser = 100000548,
9479 
9480  /// Cys->Trp: Cys->Trp substitution.
9481  UNIMOD_Cys__Trp = 100000549,
9482 
9483  /// Cys->Tyr: Cys->Tyr substitution.
9484  UNIMOD_Cys__Tyr = 100000550,
9485 
9486  /// Cys->Arg: Cys->Arg substitution.
9487  UNIMOD_Cys__Arg = 100000551,
9488 
9489  /// Cys->Gly: Cys->Gly substitution.
9490  UNIMOD_Cys__Gly = 100000552,
9491 
9492  /// Asp->Ala: Asp->Ala substitution.
9493  UNIMOD_Asp__Ala = 100000553,
9494 
9495  /// Asp->His: Asp->His substitution.
9496  UNIMOD_Asp__His = 100000554,
9497 
9498  /// Asp->Asn: Asp->Asn substitution.
9499  UNIMOD_Asp__Asn = 100000555,
9500 
9501  /// Asp->Gly: Asp->Gly substitution.
9502  UNIMOD_Asp__Gly = 100000556,
9503 
9504  /// Asp->Tyr: Asp->Tyr substitution.
9505  UNIMOD_Asp__Tyr = 100000557,
9506 
9507  /// Asp->Glu: Asp->Glu substitution.
9508  UNIMOD_Asp__Glu = 100000558,
9509 
9510  /// Asp->Val: Asp->Val substitution.
9511  UNIMOD_Asp__Val = 100000559,
9512 
9513  /// Glu->Ala: Glu->Ala substitution.
9514  UNIMOD_Glu__Ala = 100000560,
9515 
9516  /// Glu->Gln: Glu->Gln substitution.
9517  UNIMOD_Glu__Gln = 100000561,
9518 
9519  /// Glu->Asp: Glu->Asp substitution.
9520  UNIMOD_Glu__Asp = 100000562,
9521 
9522  /// Glu->Lys: Glu->Lys substitution.
9523  UNIMOD_Glu__Lys = 100000563,
9524 
9525  /// Glu->Gly: Glu->Gly substitution.
9526  UNIMOD_Glu__Gly = 100000564,
9527 
9528  /// Glu->Val: Glu->Val substitution.
9529  UNIMOD_Glu__Val = 100000565,
9530 
9531  /// Phe->Ser: Phe->Ser substitution.
9532  UNIMOD_Phe__Ser = 100000566,
9533 
9534  /// Phe->Cys: Phe->Cys substitution.
9535  UNIMOD_Phe__Cys = 100000567,
9536 
9537  /// Phe->Xle: Phe->Leu/Ile substitution.
9538  UNIMOD_Phe__Xle = 100000568,
9539 
9540  /// Phe->Tyr: Phe->Tyr substitution.
9541  UNIMOD_Phe__Tyr = 100000569,
9542 
9543  /// Phe->Val: Phe->Val substitution.
9544  UNIMOD_Phe__Val = 100000570,
9545 
9546  /// Gly->Ala: Gly->Ala substitution.
9547  UNIMOD_Gly__Ala = 100000571,
9548 
9549  /// Gly->Ser: Gly->Ser substitution.
9550  UNIMOD_Gly__Ser = 100000572,
9551 
9552  /// Gly->Trp: Gly->Trp substitution.
9553  UNIMOD_Gly__Trp = 100000573,
9554 
9555  /// Gly->Glu: Gly->Glu substitution.
9556  UNIMOD_Gly__Glu = 100000574,
9557 
9558  /// Gly->Val: Gly->Val substitution.
9559  UNIMOD_Gly__Val = 100000575,
9560 
9561  /// Gly->Asp: Gly->Asp substitution.
9562  UNIMOD_Gly__Asp = 100000576,
9563 
9564  /// Gly->Cys: Gly->Cys substitution.
9565  UNIMOD_Gly__Cys = 100000577,
9566 
9567  /// Gly->Arg: Gly->Arg substitution.
9568  UNIMOD_Gly__Arg = 100000578,
9569 
9570  /// His->Pro: His->Pro substitution.
9571  UNIMOD_His__Pro = 100000580,
9572 
9573  /// His->Tyr: His->Tyr substitution.
9574  UNIMOD_His__Tyr = 100000581,
9575 
9576  /// His->Gln: His->Gln substitution.
9577  UNIMOD_His__Gln = 100000582,
9578 
9579  /// His->Arg: His->Arg substitution.
9580  UNIMOD_His__Arg = 100000584,
9581 
9582  /// His->Xle: His->Leu/Ile substitution.
9583  UNIMOD_His__Xle = 100000585,
9584 
9585  /// Xle->Thr: Leu/Ile->Thr substitution.
9586  UNIMOD_Xle__Thr = 100000588,
9587 
9588  /// Xle->Asn: Leu/Ile->Asn substitution.
9589  UNIMOD_Xle__Asn = 100000589,
9590 
9591  /// Xle->Lys: Leu/Ile->Lys substitution.
9592  UNIMOD_Xle__Lys = 100000590,
9593 
9594  /// Lys->Thr: Lys->Thr substitution.
9595  UNIMOD_Lys__Thr = 100000594,
9596 
9597  /// Lys->Asn: Lys->Asn substitution.
9598  UNIMOD_Lys__Asn = 100000595,
9599 
9600  /// Lys->Glu: Lys->Glu substitution.
9601  UNIMOD_Lys__Glu = 100000596,
9602 
9603  /// Lys->Gln: Lys->Gln substitution.
9604  UNIMOD_Lys__Gln = 100000597,
9605 
9606  /// Lys->Met: Lys->Met substitution.
9607  UNIMOD_Lys__Met = 100000598,
9608 
9609  /// Lys->Arg: Lys->Arg substitution.
9610  UNIMOD_Lys__Arg = 100000599,
9611 
9612  /// Lys->Xle: Lys->Leu/Ile substitution.
9613  UNIMOD_Lys__Xle = 100000600,
9614 
9615  /// Xle->Ser: Leu/Ile->Ser substitution.
9616  UNIMOD_Xle__Ser = 100000601,
9617 
9618  /// Xle->Phe: Leu/Ile->Phe substitution.
9619  UNIMOD_Xle__Phe = 100000602,
9620 
9621  /// Xle->Trp: Leu/Ile->Trp substitution.
9622  UNIMOD_Xle__Trp = 100000603,
9623 
9624  /// Xle->Pro: Leu/Ile->Pro substitution.
9625  UNIMOD_Xle__Pro = 100000604,
9626 
9627  /// Xle->Val: Leu/Ile->Val substitution.
9628  UNIMOD_Xle__Val = 100000605,
9629 
9630  /// Xle->His: Leu/Ile->His substitution.
9631  UNIMOD_Xle__His = 100000606,
9632 
9633  /// Xle->Gln: Leu/Ile->Gln substitution.
9634  UNIMOD_Xle__Gln = 100000607,
9635 
9636  /// Xle->Met: Leu/Ile->Met substitution.
9637  UNIMOD_Xle__Met = 100000608,
9638 
9639  /// Xle->Arg: Leu/Ile->Arg substitution.
9640  UNIMOD_Xle__Arg = 100000609,
9641 
9642  /// Met->Thr: Met->Thr substitution.
9643  UNIMOD_Met__Thr = 100000610,
9644 
9645  /// Met->Arg: Met->Arg substitution.
9646  UNIMOD_Met__Arg = 100000611,
9647 
9648  /// Met->Lys: Met->Lys substitution.
9649  UNIMOD_Met__Lys = 100000613,
9650 
9651  /// Met->Xle: Met->Leu/Ile substitution.
9652  UNIMOD_Met__Xle = 100000614,
9653 
9654  /// Met->Val: Met->Val substitution.
9655  UNIMOD_Met__Val = 100000615,
9656 
9657  /// Asn->Ser: Asn->Ser substitution.
9658  UNIMOD_Asn__Ser = 100000616,
9659 
9660  /// Asn->Thr: Asn->Thr substitution.
9661  UNIMOD_Asn__Thr = 100000617,
9662 
9663  /// Asn->Lys: Asn->Lys substitution.
9664  UNIMOD_Asn__Lys = 100000618,
9665 
9666  /// Asn->Tyr: Asn->Tyr substitution.
9667  UNIMOD_Asn__Tyr = 100000619,
9668 
9669  /// Asn->His: Asn->His substitution.
9670  UNIMOD_Asn__His = 100000620,
9671 
9672  /// Asn->Asp: Asn->Asp substitution.
9673  UNIMOD_Asn__Asp = 100000621,
9674 
9675  /// Asn->Xle: Asn->Leu/Ile substitution.
9676  UNIMOD_Asn__Xle = 100000622,
9677 
9678  /// Pro->Ser: Pro->Ser substitution.
9679  UNIMOD_Pro__Ser = 100000623,
9680 
9681  /// Pro->Ala: Pro->Ala substitution.
9682  UNIMOD_Pro__Ala = 100000624,
9683 
9684  /// Pro->His: Pro->His substitution.
9685  UNIMOD_Pro__His = 100000625,
9686 
9687  /// Pro->Gln: Pro->Gln substitution.
9688  UNIMOD_Pro__Gln = 100000626,
9689 
9690  /// Pro->Thr: Pro->Thr substitution.
9691  UNIMOD_Pro__Thr = 100000627,
9692 
9693  /// Pro->Arg: Pro->Arg substitution.
9694  UNIMOD_Pro__Arg = 100000628,
9695 
9696  /// Pro->Xle: Pro->Leu/Ile substitution.
9697  UNIMOD_Pro__Xle = 100000629,
9698 
9699  /// Gln->Pro: Gln->Pro substitution.
9700  UNIMOD_Gln__Pro = 100000630,
9701 
9702  /// Gln->Lys: Gln->Lys substitution.
9703  UNIMOD_Gln__Lys = 100000631,
9704 
9705  /// Gln->Glu: Gln->Glu substitution.
9706  UNIMOD_Gln__Glu = 100000632,
9707 
9708  /// Gln->His: Gln->His substitution.
9709  UNIMOD_Gln__His = 100000633,
9710 
9711  /// Gln->Arg: Gln->Arg substitution.
9712  UNIMOD_Gln__Arg = 100000634,
9713 
9714  /// Gln->Xle: Gln->Leu/Ile substitution.
9715  UNIMOD_Gln__Xle = 100000635,
9716 
9717  /// Arg->Ser: Arg->Ser substitution.
9718  UNIMOD_Arg__Ser = 100000636,
9719 
9720  /// Arg->Trp: Arg->Trp substitution.
9721  UNIMOD_Arg__Trp = 100000637,
9722 
9723  /// Arg->Thr: Arg->Thr substitution.
9724  UNIMOD_Arg__Thr = 100000638,
9725 
9726  /// Arg->Pro: Arg->Pro substitution.
9727  UNIMOD_Arg__Pro = 100000639,
9728 
9729  /// Arg->Lys: Arg->Lys substitution.
9730  UNIMOD_Arg__Lys = 100000640,
9731 
9732  /// Arg->His: Arg->His substitution.
9733  UNIMOD_Arg__His = 100000641,
9734 
9735  /// Arg->Gln: Arg->Gln substitution.
9736  UNIMOD_Arg__Gln = 100000642,
9737 
9738  /// Arg->Met: Arg->Met substitution.
9739  UNIMOD_Arg__Met = 100000643,
9740 
9741  /// Arg->Cys: Arg->Cys substitution.
9742  UNIMOD_Arg__Cys = 100000644,
9743 
9744  /// Arg->Xle: Arg->Leu/Ile substitution.
9745  UNIMOD_Arg__Xle = 100000645,
9746 
9747  /// Arg->Gly: Arg->Gly substitution.
9748  UNIMOD_Arg__Gly = 100000646,
9749 
9750  /// Ser->Phe: Ser->Phe substitution.
9751  UNIMOD_Ser__Phe = 100000647,
9752 
9753  /// Ser->Ala: Ser->Ala substitution.
9754  UNIMOD_Ser__Ala = 100000648,
9755 
9756  /// Ser->Trp: Ser->Trp substitution.
9757  UNIMOD_Ser__Trp = 100000649,
9758 
9759  /// Ser->Thr: Ser->Thr substitution.
9760  UNIMOD_Ser__Thr = 100000650,
9761 
9762  /// Ser->Asn: Ser->Asn substitution.
9763  UNIMOD_Ser__Asn = 100000651,
9764 
9765  /// Ser->Pro: Ser->Pro substitution.
9766  UNIMOD_Ser__Pro = 100000652,
9767 
9768  /// Ser->Tyr: Ser->Tyr substitution.
9769  UNIMOD_Ser__Tyr = 100000653,
9770 
9771  /// Ser->Cys: Ser->Cys substitution.
9772  UNIMOD_Ser__Cys = 100000654,
9773 
9774  /// Ser->Arg: Ser->Arg substitution.
9775  UNIMOD_Ser__Arg = 100000655,
9776 
9777  /// Ser->Xle: Ser->Leu/Ile substitution.
9778  UNIMOD_Ser__Xle = 100000656,
9779 
9780  /// Ser->Gly: Ser->Gly substitution.
9781  UNIMOD_Ser__Gly = 100000657,
9782 
9783  /// Thr->Ser: Thr->Ser substitution.
9784  UNIMOD_Thr__Ser = 100000658,
9785 
9786  /// Thr->Ala: Thr->Ala substitution.
9787  UNIMOD_Thr__Ala = 100000659,
9788 
9789  /// Thr->Asn: Thr->Asn substitution.
9790  UNIMOD_Thr__Asn = 100000660,
9791 
9792  /// Thr->Lys: Thr->Lys substitution.
9793  UNIMOD_Thr__Lys = 100000661,
9794 
9795  /// Thr->Pro: Thr->Pro substitution.
9796  UNIMOD_Thr__Pro = 100000662,
9797 
9798  /// Thr->Met: Thr->Met substitution.
9799  UNIMOD_Thr__Met = 100000663,
9800 
9801  /// Thr->Xle: Thr->Leu/Ile substitution.
9802  UNIMOD_Thr__Xle = 100000664,
9803 
9804  /// Thr->Arg: Thr->Arg substitution.
9805  UNIMOD_Thr__Arg = 100000665,
9806 
9807  /// Val->Phe: Val->Phe substitution.
9808  UNIMOD_Val__Phe = 100000666,
9809 
9810  /// Val->Ala: Val->Ala substitution.
9811  UNIMOD_Val__Ala = 100000667,
9812 
9813  /// Val->Glu: Val->Glu substitution.
9814  UNIMOD_Val__Glu = 100000668,
9815 
9816  /// Val->Met: Val->Met substitution.
9817  UNIMOD_Val__Met = 100000669,
9818 
9819  /// Val->Asp: Val->Asp substitution.
9820  UNIMOD_Val__Asp = 100000670,
9821 
9822  /// Val->Xle: Val->Leu/Ile substitution.
9823  UNIMOD_Val__Xle = 100000671,
9824 
9825  /// Val->Gly: Val->Gly substitution.
9826  UNIMOD_Val__Gly = 100000672,
9827 
9828  /// Trp->Ser: Trp->Ser substitution.
9829  UNIMOD_Trp__Ser = 100000673,
9830 
9831  /// Trp->Cys: Trp->Cys substitution.
9832  UNIMOD_Trp__Cys = 100000674,
9833 
9834  /// Trp->Arg: Trp->Arg substitution.
9835  UNIMOD_Trp__Arg = 100000675,
9836 
9837  /// Trp->Gly: Trp->Gly substitution.
9838  UNIMOD_Trp__Gly = 100000676,
9839 
9840  /// Trp->Xle: Trp->Leu/Ile substitution.
9841  UNIMOD_Trp__Xle = 100000677,
9842 
9843  /// Tyr->Phe: Tyr->Phe substitution.
9844  UNIMOD_Tyr__Phe = 100000678,
9845 
9846  /// Tyr->Ser: Tyr->Ser substitution.
9847  UNIMOD_Tyr__Ser = 100000679,
9848 
9849  /// Tyr->Asn: Tyr->Asn substitution.
9850  UNIMOD_Tyr__Asn = 100000680,
9851 
9852  /// Tyr->His: Tyr->His substitution.
9853  UNIMOD_Tyr__His = 100000681,
9854 
9855  /// Tyr->Asp: Tyr->Asp substitution.
9856  UNIMOD_Tyr__Asp = 100000682,
9857 
9858  /// Tyr->Cys: Tyr->Cys substitution.
9859  UNIMOD_Tyr__Cys = 100000683,
9860 
9861  /// BDMAPP: Mass Defect Tag on lysine e-amino.
9862  UNIMOD_BDMAPP = 100000684,
9863 
9864  /// NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
9865  UNIMOD_NA_LNO2 = 100000685,
9866 
9867  /// NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
9868  UNIMOD_NA_OA_NO2 = 100000686,
9869 
9870  /// ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
9871  UNIMOD_ICPL_2H_4_ = 100000687,
9872 
9873  /// Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
9875 
9876  /// Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
9878 
9879  /// NIC: Nicotinic Acid.
9880  UNIMOD_NIC = 100000697,
9881 
9882  /// dNIC: Deuterated Nicotinic Acid.
9883  UNIMOD_dNIC = 100000698,
9884 
9885  /// HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
9887 
9888  /// 4-ONE: 4-Oxononenal (ONE).
9889  UNIMOD_4_ONE = 100000721,
9890 
9891  /// O-Dimethylphosphate: O-Dimethylphosphorylation.
9893 
9894  /// O-Methylphosphate: O-Methylphosphorylation.
9896 
9897  /// Diethylphosphate: O-Diethylphosphorylation.
9899 
9900  /// Ethylphosphate: O-Ethylphosphorylation.
9902 
9903  /// O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
9905 
9906  /// Methylphosphonate: Methylphosphonylation.
9908 
9909  /// O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
9911 
9912  /// iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
9913  UNIMOD_iTRAQ8plex = 100000730,
9914 
9915  /// iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
9917 
9918  /// Ethanolamine: Carboxyl modification with ethanolamine.
9919  UNIMOD_Ethanolamine = 100000734,
9920 
9921  /// DTT_ST: Dithiothreitol (DTT).
9922  UNIMOD_DTT_ST = 100000735,
9923 
9924  /// DTT_C: Dithiothreitol (DTT) on Cys.
9925  UNIMOD_DTT_C = 100000736,
9926 
9927  /// TMT6plex: Sixplex Tandem Mass Tag®.
9928  UNIMOD_TMT6plex = 100000737,
9929 
9930  /// TMT2plex: Duplex Tandem Mass Tag®.
9931  UNIMOD_TMT2plex = 100000738,
9932 
9933  /// TMT: Native Tandem Mass Tag®.
9934  UNIMOD_TMT = 100000739,
9935 
9936  /// ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
9937  UNIMOD_ExacTagThiol = 100000740,
9938 
9939  /// ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
9940  UNIMOD_ExacTagAmine = 100000741,
9941 
9942  /// 4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
9944 
9945  /// NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
9946  UNIMOD_NO_SMX_SEMD = 100000744,
9947 
9948  /// NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
9949  UNIMOD_NO_SMX_SMCT = 100000745,
9950 
9951  /// NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
9952  UNIMOD_NO_SMX_SIMD = 100000746,
9953 
9954  /// Malonyl: Malonylation of C and S residues.
9955  UNIMOD_Malonyl = 100000747,
9956 
9957  /// 3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
9958  UNIMOD_3sulfo = 100000748,
9959 
9960  /// trifluoro: Trifluoroleucine replacement of leucine.
9961  UNIMOD_trifluoro = 100000750,
9962 
9963  /// TNBS: Tri nitro benzene.
9964  UNIMOD_TNBS = 100000751,
9965 
9966  /// IDEnT: Isotope Distribution Encoded Tag.
9967  UNIMOD_IDEnT = 100000762,
9968 
9969  /// DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines.
9970  UNIMOD_DTT_ST_2H_6_ = 100000763,
9971 
9972  /// DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines.
9973  UNIMOD_DTT_C_2H_6_ = 100000764,
9974 
9975  /// Met-loss: Removal of initiator methionine from protein N-terminus.
9976  UNIMOD_Met_loss = 100000765,
9977 
9978  /// Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new N-terminus.
9980 
9981  /// Menadione-HQ: Menadione hydroquinone derivative.
9982  UNIMOD_Menadione_HQ = 100000767,
9983 
9984  /// Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
9986 
9987  /// lapachenole: Lapachenole photochemically added to cysteine.
9988  UNIMOD_lapachenole = 100000771,
9989 
9990  /// Label:13C(5): 13C(5) Silac label.
9991  UNIMOD_Label_13C_5_ = 100000772,
9992 
9993  /// maleimide: Maleimide.
9994  UNIMOD_maleimide = 100000773,
9995 
9996  /// Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
9998 
9999  /// Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
10001 
10002  /// NEM:2H(5): D5 N-ethylmaleimide on cysteines.
10003  UNIMOD_NEM_2H_5_ = 100000776,
10004 
10005  /// AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
10007 
10008  /// Hex(1)HexNAc(1): Hex1HexNAc1.
10010 
10011  /// Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
10013 
10014  /// Biotin:Thermo-21345: Was PentylamineBiotin.
10016 
10017  /// Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
10018  UNIMOD_Pentylamine = 100000801,
10019 
10020  /// Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
10022 
10023  /// Cy3b-maleimide: Fluorescent dye that labels cysteines.
10025 
10026  /// Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
10028 
10029  /// BMOE: Addition of BMOE crosslinker.
10030  UNIMOD_BMOE = 100000824,
10031 
10032  /// DFDNB: Addition of DFDNB crosslinker.
10033  UNIMOD_DFDNB = 100000825,
10034 
10035  /// TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative.
10036  UNIMOD_TMPP_Ac = 100000827,
10037 
10038  /// Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
10040 
10041  /// Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
10043 
10044  /// Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
10046 
10047  /// Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
10049 
10050  /// Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
10051  UNIMOD_Arg__Npo = 100000837,
10052 
10053  /// EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
10054  UNIMOD_EQIGG = 100000846,
10055 
10056  /// Arg2PG: Adduct of phenylglyoxal with Arg.
10057  UNIMOD_Arg2PG = 100000848,
10058 
10059  /// cGMP: S-guanylation.
10060  UNIMOD_cGMP = 100000849,
10061 
10062  /// cGMP+RMP-loss: S-guanylation-2.
10064 
10065  /// Label:2H(4)+GG: Ubiquitination 2H4 lysine.
10067 
10068  /// MG-H1: Methylglyoxal-derived hydroimidazolone.
10069  UNIMOD_MG_H1 = 100000859,
10070 
10071  /// G-H1: Glyoxal-derived hydroimiadazolone.
10072  UNIMOD_G_H1 = 100000860,
10073 
10074  /// ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
10075  UNIMOD_ZGB = 100000861,
10076 
10077  /// Label:13C(1)2H(3): SILAC.
10079 
10080  /// Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
10082 
10083  /// ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form.
10085 
10086  /// QEQTGG: SUMOylation by SUMO-1.
10087  UNIMOD_QEQTGG = 100000876,
10088 
10089  /// QQQTGG: SUMOylation by SUMO-2/3.
10090  UNIMOD_QQQTGG = 100000877,
10091 
10092  /// Bodipy: Bodipy modifications onto cysteine.
10093  UNIMOD_Bodipy = 100000878,
10094 
10095  /// Biotin:Thermo-21325: Was ChromoBiotin.
10097 
10098  /// Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
10100 
10101  /// HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
10103 
10104  /// MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
10105  UNIMOD_MDCC = 100000887,
10106 
10107  /// mTRAQ: MTRAQ light.
10108  UNIMOD_mTRAQ = 100000888,
10109 
10110  /// mTRAQ:13C(3)15N(1): MTRAQ medium.
10112 
10113  /// DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
10115 
10116  /// Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
10118 
10119  /// CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
10121 
10122  /// CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
10124 
10125  /// Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
10127 
10128  /// Met->Aha: Methionine replacement by azido homoalanine.
10129  UNIMOD_Met__Aha = 100000896,
10130 
10131  /// Label:15N(4): SILAC 15N(4).
10132  UNIMOD_Label_15N_4_ = 100000897,
10133 
10134  /// pyrophospho: Pyrophosphorylation of Ser/Thr.
10135  UNIMOD_pyrophospho = 100000898,
10136 
10137  /// Met->Hpg: Methionine replacement by homopropargylglycine.
10138  UNIMOD_Met__Hpg = 100000899,
10139 
10140  /// 4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine.
10141  UNIMOD_4AcAllylGal = 100000901,
10142 
10143  /// DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
10145 
10146  /// Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
10147  UNIMOD_Lys__CamCys = 100000903,
10148 
10149  /// Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
10150  UNIMOD_Phe__CamCys = 100000904,
10151 
10152  /// Leu->MetOx: Leu->Met substitution and sulfoxidation.
10153  UNIMOD_Leu__MetOx = 100000905,
10154 
10155  /// Lys->MetOx: Lys->Met substitution and sulfoxidation.
10156  UNIMOD_Lys__MetOx = 100000906,
10157 
10158  /// Galactosyl: Gluconoylation.
10159  UNIMOD_Galactosyl = 100000907,
10160 
10161  /// SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
10163 
10164  /// Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
10166 
10167  /// MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL).
10168  UNIMOD_MTSL = 100000911,
10169 
10170  /// HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
10171  UNIMOD_HNE_BAHAH = 100000912,
10172 
10173  /// Methylmalonylation: Methylmalonylation on Serine.
10175 
10176  /// Ethoxyformyl: Ethoxyformylation.
10177  UNIMOD_Ethoxyformyl = 100000915,
10178 
10179  /// Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
10181 
10182  /// ethylamino: Ethyl amino.
10183  UNIMOD_ethylamino = 100000926,
10184 
10185  /// MercaptoEthanol: 2-OH-ethyl thio-Ser.
10187 
10188  /// Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
10190 
10191  /// VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
10192  UNIMOD_VFQQQTGG = 100000932,
10193 
10194  /// VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
10195  UNIMOD_VIEVYQEQTGG = 100000933,
10196 
10197  /// AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
10198  UNIMOD_AMTzHexNAc2 = 100000934,
10199 
10200  /// Atto495Maleimide: High molecular absorption maleimide label for proteins.
10202 
10203  /// Chlorination: Chlorination of tyrosine residues.
10204  UNIMOD_Chlorination = 100000936,
10205 
10206  /// dichlorination: Dichlorination.
10208 
10209  /// AROD: Cysteine modifier.
10210  UNIMOD_AROD = 100000938,
10211 
10212  /// Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of methylamine.
10214 
10215  /// Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ethylamine.
10217 
10218  /// DNPS: 2,4-Dinitrobenzenesulfenyl.
10219  UNIMOD_DNPS = 100000941,
10220 
10221  /// SulfoGMBS: High molecular absorption label for proteins.
10222  UNIMOD_SulfoGMBS = 100000942,
10223 
10224  /// DimethylamineGMBS: Modified GMBS X linker for proteins.
10226 
10227  /// Label:15N(2)2H(9): SILAC label.
10229 
10230  /// LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
10232 
10233  /// LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
10234  UNIMOD_LG_pyrrole = 100000947,
10235 
10236  /// LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
10238 
10239  /// 3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
10241 
10242  /// Cation:Li: Replacement of proton by lithium.
10243  UNIMOD_Cation_Li = 100000950,
10244 
10245  /// Cation:Ca[II]: Replacement of 2 protons by calcium.
10247 
10248  /// Cation:Fe[II]: Replacement of 2 protons by iron.
10250 
10251  /// Cation:Ni[II]: Replacement of 2 protons by nickel.
10253 
10254  /// Cation:Zn[II]: Replacement of 2 protons by zinc.
10256 
10257  /// Cation:Ag: Replacement of proton by silver.
10258  UNIMOD_Cation_Ag = 100000955,
10259 
10260  /// Cation:Mg[II]: Replacement of 2 protons by magnesium.
10262 
10263  /// 2-succinyl: S-(2-succinyl) cysteine.
10264  UNIMOD_2_succinyl = 100000957,
10265 
10266  /// Propargylamine: Propargylamine.
10268 
10269  /// Phosphopropargyl: Phospho-propargylamine.
10271 
10272  /// SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
10273  UNIMOD_SUMO2135 = 100000960,
10274 
10275  /// SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
10276  UNIMOD_SUMO3549 = 100000961,
10277 
10278  /// thioacylPA: Membrane protein extraction.
10279  UNIMOD_thioacylPA = 100000967,
10280 
10281  /// maleimide3: Maleimide-3-saccharide.
10282  UNIMOD_maleimide3 = 100000971,
10283 
10284  /// maleimide5: Maleimide-5-saccharide.
10285  UNIMOD_maleimide5 = 100000972,
10286 
10287  /// Puromycin: Puromycin.
10288  UNIMOD_Puromycin = 100000973,
10289 
10290  /// Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
10291  UNIMOD_Chlorpyrifos = 100000975,
10292 
10293  /// Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
10294  UNIMOD_Carbofuran = 100000977,
10295 
10296  /// BITC: Benzyl isothiocyanate.
10297  UNIMOD_BITC = 100000978,
10298 
10299  /// PEITC: Phenethyl isothiocyanate.
10300  UNIMOD_PEITC = 100000979,
10301 
10302  /// glucosone: Condensation product of glucosone.
10303  UNIMOD_glucosone = 100000981,
10304 
10305  /// cysTMT: Native cysteine-reactive Tandem Mass Tag®.
10306  UNIMOD_cysTMT = 100000984,
10307 
10308  /// cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
10309  UNIMOD_cysTMT6plex = 100000985,
10310 
10311  /// Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
10313 
10314  /// Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
10316 
10317  /// Ammonium: Replacement of proton with ammonium ion.
10318  UNIMOD_Ammonium = 100000989,
10319 
10320  /// ISD_z+2_ion: ISD (z+2)-series.
10321  UNIMOD_ISD_z_2_ion = 100000991,
10322 
10323  /// Biotin:Sigma-B1267: Was Biotin-maleimide.
10325 
10326  /// Label:15N(1): 15N(1).
10327  UNIMOD_Label_15N_1_ = 100000994,
10328 
10329  /// Label:15N(2): 15N(2).
10330  UNIMOD_Label_15N_2_ = 100000995,
10331 
10332  /// Label:15N(3): 15N(3).
10333  UNIMOD_Label_15N_3_ = 100000996,
10334 
10335  /// sulfo+amino: Aminotyrosine with sulfation.
10336  UNIMOD_sulfo_amino = 100000997,
10337 
10338  /// AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
10339  UNIMOD_AHA_Alkyne = 100001000,
10340 
10341  /// AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
10343 
10344  /// EGCG1: (-)-epigallocatechin-3-gallate.
10345  UNIMOD_EGCG1 = 100001002,
10346 
10347  /// EGCG2: (-)-dehydroepigallocatechin.
10348  UNIMOD_EGCG2 = 100001003,
10349 
10350  /// Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
10352 
10353  /// Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
10355 
10356  /// Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
10358 
10359  /// Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
10361 
10362  /// Cys->CamSec: Sec Iodoacetamide derivative.
10363  UNIMOD_Cys__CamSec = 100001008,
10364 
10365  /// Thiazolidine: Addition of Carbon to cysteine.
10366  UNIMOD_Thiazolidine = 100001009,
10367 
10368  /// DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
10370 
10371  /// Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
10373 
10374  /// glycidamide: Glycidamide adduct.
10375  UNIMOD_glycidamide = 100001014,
10376 
10377  /// Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
10378  UNIMOD_Ahx2_Hsl = 100001015,
10379 
10380  /// DMPO: DMPO spin-trap nitrone adduct.
10381  UNIMOD_DMPO = 100001017,
10382 
10383  /// ICDID: Isotope-Coded Dimedone light form.
10384  UNIMOD_ICDID = 100001018,
10385 
10386  /// ICDID:2H(6): Isotope-Coded Dimedone heavy form.
10387  UNIMOD_ICDID_2H_6_ = 100001019,
10388 
10389  /// Xlink:DSS: Water-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.
10390  UNIMOD_Xlink_DSS = 100001020,
10391 
10392  /// Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
10393  UNIMOD_Xlink_EGS = 100001021,
10394 
10395  /// Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
10396  UNIMOD_Xlink_DST = 100001022,
10397 
10398  /// Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
10399  UNIMOD_Xlink_DTSSP = 100001023,
10400 
10401  /// Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
10402  UNIMOD_Xlink_SMCC = 100001024,
10403 
10404  /// Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
10405  UNIMOD_Xlink_DMP_de = 100001027,
10406 
10407  /// Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
10409 
10410  /// Biotin:Thermo-88310: Desthiobiotin modification of lysine.
10412 
10413  /// 2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
10415 
10416  /// Cys->SecNEM: N-ethylmaleimide on selenocysteines.
10417  UNIMOD_Cys__SecNEM = 100001033,
10418 
10419  /// Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
10421 
10422  /// Thiadiazole: Thiadiazolydation of Cys.
10423  UNIMOD_Thiadiazole = 100001035,
10424 
10425  /// Withaferin: Modification of cystein by withaferin.
10426  UNIMOD_Withaferin = 100001036,
10427 
10428  /// Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
10430 
10431  /// TAMRA-FP: TAMRA fluorophosphonate modification of serine.
10432  UNIMOD_TAMRA_FP = 100001038,
10433 
10434  /// Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
10436 
10437  /// Deoxyhypusine: Deoxyhypusine.
10439 
10440  /// Acetyldeoxyhypusine: Acetyldeoxyhypusine.
10442 
10443  /// Acetylhypusine: Acetylhypusine.
10445 
10446  /// Ala->Cys: Ala->Cys substitution.
10447  UNIMOD_Ala__Cys = 100001044,
10448 
10449  /// Ala->Phe: Ala->Phe substitution.
10450  UNIMOD_Ala__Phe = 100001045,
10451 
10452  /// Ala->His: Ala->His substitution.
10453  UNIMOD_Ala__His = 100001046,
10454 
10455  /// Ala->Xle: Ala->Leu/Ile substitution.
10456  UNIMOD_Ala__Xle = 100001047,
10457 
10458  /// Ala->Lys: Ala->Lys substitution.
10459  UNIMOD_Ala__Lys = 100001048,
10460 
10461  /// Ala->Met: Ala->Met substitution.
10462  UNIMOD_Ala__Met = 100001049,
10463 
10464  /// Ala->Asn: Ala->Asn substitution.
10465  UNIMOD_Ala__Asn = 100001050,
10466 
10467  /// Ala->Gln: Ala->Gln substitution.
10468  UNIMOD_Ala__Gln = 100001051,
10469 
10470  /// Ala->Arg: Ala->Arg substitution.
10471  UNIMOD_Ala__Arg = 100001052,
10472 
10473  /// Ala->Trp: Ala->Trp substitution.
10474  UNIMOD_Ala__Trp = 100001053,
10475 
10476  /// Ala->Tyr: Ala->Tyr substitution.
10477  UNIMOD_Ala__Tyr = 100001054,
10478 
10479  /// Cys->Ala: Cys->Ala substitution.
10480  UNIMOD_Cys__Ala = 100001055,
10481 
10482  /// Cys->Asp: Cys->Asp substitution.
10483  UNIMOD_Cys__Asp = 100001056,
10484 
10485  /// Cys->Glu: Cys->Glu substitution.
10486  UNIMOD_Cys__Glu = 100001057,
10487 
10488  /// Cys->His: Cys->His substitution.
10489  UNIMOD_Cys__His = 100001058,
10490 
10491  /// Cys->Xle: Cys->Leu/Ile substitution.
10492  UNIMOD_Cys__Xle = 100001059,
10493 
10494  /// Cys->Lys: Cys->Lys substitution.
10495  UNIMOD_Cys__Lys = 100001060,
10496 
10497  /// Cys->Met: Cys->Met substitution.
10498  UNIMOD_Cys__Met = 100001061,
10499 
10500  /// Cys->Asn: Cys->Asn substitution.
10501  UNIMOD_Cys__Asn = 100001062,
10502 
10503  /// Cys->Pro: Cys->Pro substitution.
10504  UNIMOD_Cys__Pro = 100001063,
10505 
10506  /// Cys->Gln: Cys->Gln substitution.
10507  UNIMOD_Cys__Gln = 100001064,
10508 
10509  /// Cys->Thr: Cys->Thr substitution.
10510  UNIMOD_Cys__Thr = 100001065,
10511 
10512  /// Cys->Val: Cys->Val substitution.
10513  UNIMOD_Cys__Val = 100001066,
10514 
10515  /// Asp->Cys: Asp->Cys substitution.
10516  UNIMOD_Asp__Cys = 100001067,
10517 
10518  /// Asp->Phe: Asp->Phe substitution.
10519  UNIMOD_Asp__Phe = 100001068,
10520 
10521  /// Asp->Xle: Asp->Leu/Ile substitution.
10522  UNIMOD_Asp__Xle = 100001069,
10523 
10524  /// Asp->Lys: Asp->Lys substitution.
10525  UNIMOD_Asp__Lys = 100001070,
10526 
10527  /// Asp->Met: Asp->Met substitution.
10528  UNIMOD_Asp__Met = 100001071,
10529 
10530  /// Asp->Pro: Asp->Pro substitution.
10531  UNIMOD_Asp__Pro = 100001072,
10532 
10533  /// Asp->Gln: Asp->Gln substitution.
10534  UNIMOD_Asp__Gln = 100001073,
10535 
10536  /// Asp->Arg: Asp->Arg substitution.
10537  UNIMOD_Asp__Arg = 100001074,
10538 
10539  /// Asp->Ser: Asp->Ser substitution.
10540  UNIMOD_Asp__Ser = 100001075,
10541 
10542  /// Asp->Thr: Asp->Thr substitution.
10543  UNIMOD_Asp__Thr = 100001076,
10544 
10545  /// Asp->Trp: Asp->Trp substitution.
10546  UNIMOD_Asp__Trp = 100001077,
10547 
10548  /// Glu->Cys: Glu->Cys substitution.
10549  UNIMOD_Glu__Cys = 100001078,
10550 
10551  /// Glu->Phe: Glu->Phe substitution.
10552  UNIMOD_Glu__Phe = 100001079,
10553 
10554  /// Glu->His: Glu->His substitution.
10555  UNIMOD_Glu__His = 100001080,
10556 
10557  /// Glu->Xle: Glu->Leu/Ile substitution.
10558  UNIMOD_Glu__Xle = 100001081,
10559 
10560  /// Glu->Met: Glu->Met substitution.
10561  UNIMOD_Glu__Met = 100001082,
10562 
10563  /// Glu->Asn: Glu->Asn substitution.
10564  UNIMOD_Glu__Asn = 100001083,
10565 
10566  /// Glu->Pro: Glu->Pro substitution.
10567  UNIMOD_Glu__Pro = 100001084,
10568 
10569  /// Glu->Arg: Glu->Arg substitution.
10570  UNIMOD_Glu__Arg = 100001085,
10571 
10572  /// Glu->Ser: Glu->Ser substitution.
10573  UNIMOD_Glu__Ser = 100001086,
10574 
10575  /// Glu->Thr: Glu->Thr substitution.
10576  UNIMOD_Glu__Thr = 100001087,
10577 
10578  /// Glu->Trp: Glu->Trp substitution.
10579  UNIMOD_Glu__Trp = 100001088,
10580 
10581  /// Glu->Tyr: Glu->Tyr substitution.
10582  UNIMOD_Glu__Tyr = 100001089,
10583 
10584  /// Phe->Ala: Phe->Ala substitution.
10585  UNIMOD_Phe__Ala = 100001090,
10586 
10587  /// Phe->Asp: Phe->Asp substitution.
10588  UNIMOD_Phe__Asp = 100001091,
10589 
10590  /// Phe->Glu: Phe->Glu substitution.
10591  UNIMOD_Phe__Glu = 100001092,
10592 
10593  /// Phe->Gly: Phe->Gly substitution.
10594  UNIMOD_Phe__Gly = 100001093,
10595 
10596  /// Phe->His: Phe->His substitution.
10597  UNIMOD_Phe__His = 100001094,
10598 
10599  /// Phe->Lys: Phe->Lys substitution.
10600  UNIMOD_Phe__Lys = 100001095,
10601 
10602  /// Phe->Met: Phe->Met substitution.
10603  UNIMOD_Phe__Met = 100001096,
10604 
10605  /// Phe->Asn: Phe->Asn substitution.
10606  UNIMOD_Phe__Asn = 100001097,
10607 
10608  /// Phe->Pro: Phe->Pro substitution.
10609  UNIMOD_Phe__Pro = 100001098,
10610 
10611  /// Phe->Gln: Phe->Gln substitution.
10612  UNIMOD_Phe__Gln = 100001099,
10613 
10614  /// Phe->Arg: Phe->Arg substitution.
10615  UNIMOD_Phe__Arg = 100001100,
10616 
10617  /// Phe->Thr: Phe->Thr substitution.
10618  UNIMOD_Phe__Thr = 100001101,
10619 
10620  /// Phe->Trp: Phe->Trp substitution.
10621  UNIMOD_Phe__Trp = 100001102,
10622 
10623  /// Gly->Phe: Gly->Phe substitution.
10624  UNIMOD_Gly__Phe = 100001103,
10625 
10626  /// Gly->His: Gly->His substitution.
10627  UNIMOD_Gly__His = 100001104,
10628 
10629  /// Gly->Xle: Gly->Leu/Ile substitution.
10630  UNIMOD_Gly__Xle = 100001105,
10631 
10632  /// Gly->Lys: Gly->Lys substitution.
10633  UNIMOD_Gly__Lys = 100001106,
10634 
10635  /// Gly->Met: Gly->Met substitution.
10636  UNIMOD_Gly__Met = 100001107,
10637 
10638  /// Gly->Asn: Gly->Asn substitution.
10639  UNIMOD_Gly__Asn = 100001108,
10640 
10641  /// Gly->Pro: Gly->Pro substitution.
10642  UNIMOD_Gly__Pro = 100001109,
10643 
10644  /// Gly->Gln: Gly->Gln substitution.
10645  UNIMOD_Gly__Gln = 100001110,
10646 
10647  /// Gly->Thr: Gly->Thr substitution.
10648  UNIMOD_Gly__Thr = 100001111,
10649 
10650  /// Gly->Tyr: Gly->Tyr substitution.
10651  UNIMOD_Gly__Tyr = 100001112,
10652 
10653  /// His->Ala: His->Ala substitution.
10654  UNIMOD_His__Ala = 100001113,
10655 
10656  /// His->Cys: His->Cys substitution.
10657  UNIMOD_His__Cys = 100001114,
10658 
10659  /// His->Glu: His->Glu substitution.
10660  UNIMOD_His__Glu = 100001115,
10661 
10662  /// His->Phe: His->Phe substitution.
10663  UNIMOD_His__Phe = 100001116,
10664 
10665  /// His->Gly: His->Gly substitution.
10666  UNIMOD_His__Gly = 100001117,
10667 
10668  /// His->Lys: His->Lys substitution.
10669  UNIMOD_His__Lys = 100001119,
10670 
10671  /// His->Met: His->Met substitution.
10672  UNIMOD_His__Met = 100001120,
10673 
10674  /// His->Ser: His->Ser substitution.
10675  UNIMOD_His__Ser = 100001121,
10676 
10677  /// His->Thr: His->Thr substitution.
10678  UNIMOD_His__Thr = 100001122,
10679 
10680  /// His->Val: His->Val substitution.
10681  UNIMOD_His__Val = 100001123,
10682 
10683  /// His->Trp: His->Trp substitution.
10684  UNIMOD_His__Trp = 100001124,
10685 
10686  /// Xle->Ala: Leu/Ile->Ala substitution.
10687  UNIMOD_Xle__Ala = 100001125,
10688 
10689  /// Xle->Cys: Leu/Ile->Cys substitution.
10690  UNIMOD_Xle__Cys = 100001126,
10691 
10692  /// Xle->Asp: Leu/Ile->Asp substitution.
10693  UNIMOD_Xle__Asp = 100001127,
10694 
10695  /// Xle->Glu: Leu/Ile->Glu substitution.
10696  UNIMOD_Xle__Glu = 100001128,
10697 
10698  /// Xle->Gly: Leu/Ile->Gly substitution.
10699  UNIMOD_Xle__Gly = 100001129,
10700 
10701  /// Xle->Tyr: Leu/Ile->Tyr substitution.
10702  UNIMOD_Xle__Tyr = 100001130,
10703 
10704  /// Lys->Ala: Lys->Ala substitution.
10705  UNIMOD_Lys__Ala = 100001131,
10706 
10707  /// Lys->Cys: Lys->Cys substitution.
10708  UNIMOD_Lys__Cys = 100001132,
10709 
10710  /// Lys->Asp: Lys->Asp substitution.
10711  UNIMOD_Lys__Asp = 100001133,
10712 
10713  /// Lys->Phe: Lys->Phe substitution.
10714  UNIMOD_Lys__Phe = 100001134,
10715 
10716  /// Lys->Gly: Lys->Gly substitution.
10717  UNIMOD_Lys__Gly = 100001135,
10718 
10719  /// Lys->His: Lys->His substitution.
10720  UNIMOD_Lys__His = 100001136,
10721 
10722  /// Lys->Pro: Lys->Pro substitution.
10723  UNIMOD_Lys__Pro = 100001137,
10724 
10725  /// Lys->Ser: Lys->Ser substitution.
10726  UNIMOD_Lys__Ser = 100001138,
10727 
10728  /// Lys->Val: Lys->Val substitution.
10729  UNIMOD_Lys__Val = 100001139,
10730 
10731  /// Lys->Trp: Lys->Trp substitution.
10732  UNIMOD_Lys__Trp = 100001140,
10733 
10734  /// Lys->Tyr: Lys->Tyr substitution.
10735  UNIMOD_Lys__Tyr = 100001141,
10736 
10737  /// Met->Ala: Met->Ala substitution.
10738  UNIMOD_Met__Ala = 100001142,
10739 
10740  /// Met->Cys: Met->Cys substitution.
10741  UNIMOD_Met__Cys = 100001143,
10742 
10743  /// Met->Asp: Met->Asp substitution.
10744  UNIMOD_Met__Asp = 100001144,
10745 
10746  /// Met->Glu: Met->Glu substitution.
10747  UNIMOD_Met__Glu = 100001145,
10748 
10749  /// Met->Phe: Met->Phe substitution.
10750  UNIMOD_Met__Phe = 100001146,
10751 
10752  /// Met->Gly: Met->Gly substitution.
10753  UNIMOD_Met__Gly = 100001147,
10754 
10755  /// Met->His: Met->His substitution.
10756  UNIMOD_Met__His = 100001148,
10757 
10758  /// Met->Asn: Met->Asn substitution.
10759  UNIMOD_Met__Asn = 100001149,
10760 
10761  /// Met->Pro: Met->Pro substitution.
10762  UNIMOD_Met__Pro = 100001150,
10763 
10764  /// Met->Gln: Met->Gln substitution.
10765  UNIMOD_Met__Gln = 100001151,
10766 
10767  /// Met->Ser: Met->Ser substitution.
10768  UNIMOD_Met__Ser = 100001152,
10769 
10770  /// Met->Trp: Met->Trp substitution.
10771  UNIMOD_Met__Trp = 100001153,
10772 
10773  /// Met->Tyr: Met->Tyr substitution.
10774  UNIMOD_Met__Tyr = 100001154,
10775 
10776  /// Asn->Ala: Asn->Ala substitution.
10777  UNIMOD_Asn__Ala = 100001155,
10778 
10779  /// Asn->Cys: Asn->Cys substitution.
10780  UNIMOD_Asn__Cys = 100001156,
10781 
10782  /// Asn->Glu: Asn->Glu substitution.
10783  UNIMOD_Asn__Glu = 100001157,
10784 
10785  /// Asn->Phe: Asn->Phe substitution.
10786  UNIMOD_Asn__Phe = 100001158,
10787 
10788  /// Asn->Gly: Asn->Gly substitution.
10789  UNIMOD_Asn__Gly = 100001159,
10790 
10791  /// Asn->Met: Asn->Met substitution.
10792  UNIMOD_Asn__Met = 100001160,
10793 
10794  /// Asn->Pro: Asn->Pro substitution.
10795  UNIMOD_Asn__Pro = 100001161,
10796 
10797  /// Asn->Gln: Asn->Gln substitution.
10798  UNIMOD_Asn__Gln = 100001162,
10799 
10800  /// Asn->Arg: Asn->Arg substitution.
10801  UNIMOD_Asn__Arg = 100001163,
10802 
10803  /// Asn->Val: Asn->Val substitution.
10804  UNIMOD_Asn__Val = 100001164,
10805 
10806  /// Asn->Trp: Asn->Trp substitution.
10807  UNIMOD_Asn__Trp = 100001165,
10808 
10809  /// Pro->Cys: Pro->Cys substitution.
10810  UNIMOD_Pro__Cys = 100001166,
10811 
10812  /// Pro->Asp: Pro->Asp substitution.
10813  UNIMOD_Pro__Asp = 100001167,
10814 
10815  /// Pro->Glu: Pro->Glu substitution.
10816  UNIMOD_Pro__Glu = 100001168,
10817 
10818  /// Pro->Phe: Pro->Phe substitution.
10819  UNIMOD_Pro__Phe = 100001169,
10820 
10821  /// Pro->Gly: Pro->Gly substitution.
10822  UNIMOD_Pro__Gly = 100001170,
10823 
10824  /// Pro->Lys: Pro->Lys substitution.
10825  UNIMOD_Pro__Lys = 100001171,
10826 
10827  /// Pro->Met: Pro->Met substitution.
10828  UNIMOD_Pro__Met = 100001172,
10829 
10830  /// Pro->Asn: Pro->Asn substitution.
10831  UNIMOD_Pro__Asn = 100001173,
10832 
10833  /// Pro->Val: Pro->Val substitution.
10834  UNIMOD_Pro__Val = 100001174,
10835 
10836  /// Pro->Trp: Pro->Trp substitution.
10837  UNIMOD_Pro__Trp = 100001175,
10838 
10839  /// Pro->Tyr: Pro->Tyr substitution.
10840  UNIMOD_Pro__Tyr = 100001176,
10841 
10842  /// Gln->Ala: Gln->Ala substitution.
10843  UNIMOD_Gln__Ala = 100001177,
10844 
10845  /// Gln->Cys: Gln->Cys substitution.
10846  UNIMOD_Gln__Cys = 100001178,
10847 
10848  /// Gln->Asp: Gln->Asp substitution.
10849  UNIMOD_Gln__Asp = 100001179,
10850 
10851  /// Gln->Phe: Gln->Phe substitution.
10852  UNIMOD_Gln__Phe = 100001180,
10853 
10854  /// Gln->Gly: Gln->Gly substitution.
10855  UNIMOD_Gln__Gly = 100001181,
10856 
10857  /// Gln->Met: Gln->Met substitution.
10858  UNIMOD_Gln__Met = 100001182,
10859 
10860  /// Gln->Asn: Gln->Asn substitution.
10861  UNIMOD_Gln__Asn = 100001183,
10862 
10863  /// Gln->Ser: Gln->Ser substitution.
10864  UNIMOD_Gln__Ser = 100001184,
10865 
10866  /// Gln->Thr: Gln->Thr substitution.
10867  UNIMOD_Gln__Thr = 100001185,
10868 
10869  /// Gln->Val: Gln->Val substitution.
10870  UNIMOD_Gln__Val = 100001186,
10871 
10872  /// Gln->Trp: Gln->Trp substitution.
10873  UNIMOD_Gln__Trp = 100001187,
10874 
10875  /// Gln->Tyr: Gln->Tyr substitution.
10876  UNIMOD_Gln__Tyr = 100001188,
10877 
10878  /// Arg->Ala: Arg->Ala substitution.
10879  UNIMOD_Arg__Ala = 100001189,
10880 
10881  /// Arg->Asp: Arg->Asp substitution.
10882  UNIMOD_Arg__Asp = 100001190,
10883 
10884  /// Arg->Glu: Arg->Glu substitution.
10885  UNIMOD_Arg__Glu = 100001191,
10886 
10887  /// Arg->Asn: Arg->Asn substitution.
10888  UNIMOD_Arg__Asn = 100001192,
10889 
10890  /// Arg->Val: Arg->Val substitution.
10891  UNIMOD_Arg__Val = 100001193,
10892 
10893  /// Arg->Tyr: Arg->Tyr substitution.
10894  UNIMOD_Arg__Tyr = 100001194,
10895 
10896  /// Arg->Phe: Arg->Phe substitution.
10897  UNIMOD_Arg__Phe = 100001195,
10898 
10899  /// Ser->Asp: Ser->Asp substitution.
10900  UNIMOD_Ser__Asp = 100001196,
10901 
10902  /// Ser->Glu: Ser->Glu substitution.
10903  UNIMOD_Ser__Glu = 100001197,
10904 
10905  /// Ser->His: Ser->His substitution.
10906  UNIMOD_Ser__His = 100001198,
10907 
10908  /// Ser->Lys: Ser->Lys substitution.
10909  UNIMOD_Ser__Lys = 100001199,
10910 
10911  /// Ser->Met: Ser->Met substitution.
10912  UNIMOD_Ser__Met = 100001200,
10913 
10914  /// Ser->Gln: Ser->Gln substitution.
10915  UNIMOD_Ser__Gln = 100001201,
10916 
10917  /// Ser->Val: Ser->Val substitution.
10918  UNIMOD_Ser__Val = 100001202,
10919 
10920  /// Thr->Cys: Thr->Cys substitution.
10921  UNIMOD_Thr__Cys = 100001203,
10922 
10923  /// Thr->Asp: Thr->Asp substitution.
10924  UNIMOD_Thr__Asp = 100001204,
10925 
10926  /// Thr->Glu: Thr->Glu substitution.
10927  UNIMOD_Thr__Glu = 100001205,
10928 
10929  /// Thr->Phe: Thr->Phe substitution.
10930  UNIMOD_Thr__Phe = 100001206,
10931 
10932  /// Thr->Gly: Thr->Gly substitution.
10933  UNIMOD_Thr__Gly = 100001207,
10934 
10935  /// Thr->His: Thr->His substitution.
10936  UNIMOD_Thr__His = 100001208,
10937 
10938  /// Thr->Gln: Thr->Gln substitution.
10939  UNIMOD_Thr__Gln = 100001209,
10940 
10941  /// Thr->Val: Thr->Val substitution.
10942  UNIMOD_Thr__Val = 100001210,
10943 
10944  /// Thr->Trp: Thr->Trp substitution.
10945  UNIMOD_Thr__Trp = 100001211,
10946 
10947  /// Thr->Tyr: Thr->Tyr substitution.
10948  UNIMOD_Thr__Tyr = 100001212,
10949 
10950  /// Val->Cys: Val->Cys substitution.
10951  UNIMOD_Val__Cys = 100001213,
10952 
10953  /// Val->His: Val->His substitution.
10954  UNIMOD_Val__His = 100001214,
10955 
10956  /// Val->Lys: Val->Lys substitution.
10957  UNIMOD_Val__Lys = 100001215,
10958 
10959  /// Val->Asn: Val->Asn substitution.
10960  UNIMOD_Val__Asn = 100001216,
10961 
10962  /// Val->Pro: Val->Pro substitution.
10963  UNIMOD_Val__Pro = 100001217,
10964 
10965  /// Val->Gln: Val->Gln substitution.
10966  UNIMOD_Val__Gln = 100001218,
10967 
10968  /// Val->Arg: Val->Arg substitution.
10969  UNIMOD_Val__Arg = 100001219,
10970 
10971  /// Val->Ser: Val->Ser substitution.
10972  UNIMOD_Val__Ser = 100001220,
10973 
10974  /// Val->Thr: Val->Thr substitution.
10975  UNIMOD_Val__Thr = 100001221,
10976 
10977  /// Val->Trp: Val->Trp substitution.
10978  UNIMOD_Val__Trp = 100001222,
10979 
10980  /// Val->Tyr: Val->Tyr substitution.
10981  UNIMOD_Val__Tyr = 100001223,
10982 
10983  /// Trp->Ala: Trp->Ala substitution.
10984  UNIMOD_Trp__Ala = 100001224,
10985 
10986  /// Trp->Asp: Trp->Asp substitution.
10987  UNIMOD_Trp__Asp = 100001225,
10988 
10989  /// Trp->Glu: Trp->Glu substitution.
10990  UNIMOD_Trp__Glu = 100001226,
10991 
10992  /// Trp->Phe: Trp->Phe substitution.
10993  UNIMOD_Trp__Phe = 100001227,
10994 
10995  /// Trp->His: Trp->His substitution.
10996  UNIMOD_Trp__His = 100001228,
10997 
10998  /// Trp->Lys: Trp->Lys substitution.
10999  UNIMOD_Trp__Lys = 100001229,
11000 
11001  /// Trp->Met: Trp->Met substitution.
11002  UNIMOD_Trp__Met = 100001230,
11003 
11004  /// Trp->Asn: Trp->Asn substitution.
11005  UNIMOD_Trp__Asn = 100001231,
11006 
11007  /// Trp->Pro: Trp->Pro substitution.
11008  UNIMOD_Trp__Pro = 100001232,
11009 
11010  /// Trp->Gln: Trp->Gln substitution.
11011  UNIMOD_Trp__Gln = 100001233,
11012 
11013  /// Trp->Thr: Trp->Thr substitution.
11014  UNIMOD_Trp__Thr = 100001234,
11015 
11016  /// Trp->Val: Trp->Val substitution.
11017  UNIMOD_Trp__Val = 100001235,
11018 
11019  /// Trp->Tyr: Trp->Tyr substitution.
11020  UNIMOD_Trp__Tyr = 100001236,
11021 
11022  /// Tyr->Ala: Tyr->Ala substitution.
11023  UNIMOD_Tyr__Ala = 100001237,
11024 
11025  /// Tyr->Glu: Tyr->Glu substitution.
11026  UNIMOD_Tyr__Glu = 100001238,
11027 
11028  /// Tyr->Gly: Tyr->Gly substitution.
11029  UNIMOD_Tyr__Gly = 100001239,
11030 
11031  /// Tyr->Lys: Tyr->Lys substitution.
11032  UNIMOD_Tyr__Lys = 100001240,
11033 
11034  /// Tyr->Met: Tyr->Met substitution.
11035  UNIMOD_Tyr__Met = 100001241,
11036 
11037  /// Tyr->Pro: Tyr->Pro substitution.
11038  UNIMOD_Tyr__Pro = 100001242,
11039 
11040  /// Tyr->Gln: Tyr->Gln substitution.
11041  UNIMOD_Tyr__Gln = 100001243,
11042 
11043  /// Tyr->Arg: Tyr->Arg substitution.
11044  UNIMOD_Tyr__Arg = 100001244,
11045 
11046  /// Tyr->Thr: Tyr->Thr substitution.
11047  UNIMOD_Tyr__Thr = 100001245,
11048 
11049  /// Tyr->Val: Tyr->Val substitution.
11050  UNIMOD_Tyr__Val = 100001246,
11051 
11052  /// Tyr->Trp: Tyr->Trp substitution.
11053  UNIMOD_Tyr__Trp = 100001247,
11054 
11055  /// Tyr->Xle: Tyr->Leu/Ile substitution.
11056  UNIMOD_Tyr__Xle = 100001248,
11057 
11058  /// AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
11059  UNIMOD_AHA_SS = 100001249,
11060 
11061  /// AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
11062  UNIMOD_AHA_SS_CAM = 100001250,
11063 
11064  /// Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
11066 
11067  /// Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
11069 
11070  /// 2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
11072 
11073  /// Saligenin: O-toluene.
11074  UNIMOD_Saligenin = 100001254,
11075 
11076  /// Cresylphosphate: O-toluyl-phosphorylation.
11078 
11079  /// CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
11081 
11082  /// Ub-Br2: Ub Bromide probe addition.
11083  UNIMOD_Ub_Br2 = 100001257,
11084 
11085  /// Ub-VME: Ubiquitin vinylmethylester.
11086  UNIMOD_Ub_VME = 100001258,
11087 
11088  /// Ub-amide: Ub amide probe addition.
11089  UNIMOD_Ub_amide = 100001260,
11090 
11091  /// Ub-fluorescein: Ub Fluorescein probe addition.
11093 
11094  /// 2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
11096 
11097  /// Gly: Addition of Glycine.
11098  UNIMOD_Gly = 100001263,
11099 
11100  /// pupylation: Addition of GGE.
11101  UNIMOD_pupylation = 100001264,
11102 
11103  /// Label:13C(4): 13C4 Methionine label.
11104  UNIMOD_Label_13C_4_ = 100001266,
11105 
11106  /// Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
11108 
11109  /// HCysThiolactone: N-Homocysteine thiolactone.
11111 
11112  /// HCysteinyl: S-homocysteinylation.
11113  UNIMOD_HCysteinyl = 100001271,
11114 
11115  /// UgiJoullie: Side reaction of HisTag.
11116  UNIMOD_UgiJoullie = 100001276,
11117 
11118  /// Dipyridyl: Cys modified with dipy ligand.
11119  UNIMOD_Dipyridyl = 100001277,
11120 
11121  /// Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
11122  UNIMOD_Furan = 100001278,
11123 
11124  /// Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction.
11125  UNIMOD_Difuran = 100001279,
11126 
11127  /// BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
11129 
11130  /// UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
11132 
11133  /// UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid.
11135 
11136  /// IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
11138 
11139  /// Arg-loss: Loss of arginine due to transpeptidation.
11140  UNIMOD_Arg_loss = 100001287,
11141 
11142  /// Arg: Addition of arginine due to transpeptidation.
11143  UNIMOD_Arg = 100001288,
11144 
11145  /// Butyryl: Butyryl.
11146  UNIMOD_Butyryl = 100001289,
11147 
11148  /// Dicarbamidomethyl: Double Carbamidomethylation.
11150 
11151  /// Dimethyl:2H(6): Dimethyl-Medium.
11153 
11154  /// GGQ: SUMOylation leaving GlyGlyGln.
11155  UNIMOD_GGQ = 100001292,
11156 
11157  /// QTGG: SUMOylation leaving GlnThrGlyGly.
11158  UNIMOD_QTGG = 100001293,
11159 
11160  /// Label:13C(3): 13C3 label for SILAC.
11161  UNIMOD_Label_13C_3_ = 100001296,
11162 
11163  /// Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
11165 
11166  /// Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
11168 
11169  /// Label:2H(10): 2H(10) label.
11170  UNIMOD_Label_2H_10_ = 100001299,
11171 
11172  /// Label:2H(4)13C(1): Label:2H(4)13C(1).
11174 
11175  /// Lys: Addition of lysine due to transpeptidation.
11176  UNIMOD_Lys = 100001301,
11177 
11178  /// mTRAQ:13C(6)15N(2): MTRAQ heavy.
11180 
11181  /// NeuAc: N-acetyl neuraminic acid.
11182  UNIMOD_NeuAc = 100001303,
11183 
11184  /// NeuGc: N-glycoyl neuraminic acid.
11185  UNIMOD_NeuGc = 100001304,
11186 
11187  /// Propyl: Propyl.
11188  UNIMOD_Propyl = 100001305,
11189 
11190  /// Propyl:2H(6): Propyl:2H(6).
11191  UNIMOD_Propyl_2H_6_ = 100001306,
11192 
11193  /// Propiophenone: Propiophenone.
11195 
11196  /// Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
11198 
11199  /// Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
11201 
11202  /// biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
11204 
11205  /// MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
11207 
11208  /// EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
11210 
11211  /// Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
11213 
11214  /// DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
11216 
11217  /// DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
11218  UNIMOD_DiLeu4plex = 100001322,
11219 
11220  /// DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
11222 
11223  /// DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
11225 
11226  /// NEMsulfur: N-ethylmaleimideSulfur.
11227  UNIMOD_NEMsulfur = 100001326,
11228 
11229  /// SulfurDioxide: SulfurDioxide.
11231 
11232  /// NEMsulfurWater: N-ethylmaleimideSulfurWater.
11234 
11235  /// bisANS-sulfonates: BisANS with loss of both sulfonates.
11237 
11238  /// DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
11239  UNIMOD_DNCB_hapten = 100001331,
11240 
11241  /// Biotin:Thermo-21911: Biotin-PEG11-maleimide.
11243 
11244  /// iodoTMT: Native iodoacetyl Tandem Mass Tag®.
11245  UNIMOD_iodoTMT = 100001341,
11246 
11247  /// iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
11248  UNIMOD_iodoTMT6plex = 100001342,
11249 
11250  /// Phosphogluconoylation: Phosphogluconoylation.
11252 
11253  /// PS_Hapten: Reaction with phenyl salicylate (PS).
11254  UNIMOD_PS_Hapten = 100001345,
11255 
11256  /// Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
11258 
11259  /// benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favor of a benzyl group.
11261 
11262  /// CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
11264 
11265  /// azole: Formation of five membered aromatic heterocycle.
11266  UNIMOD_azole = 100001355,
11267 
11268  /// phosphoRibosyl: Phosphate-ribosylation.
11270 
11271  /// NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
11273 
11274  /// Crotonyl: Crotonylation.
11275  UNIMOD_Crotonyl = 100001363,
11276 
11277  /// O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
11279 
11280  /// N-dimethylphosphate: N-dimethylphosphate.
11282 
11283  /// dHex(1)Hex(1): Hex1dHex1.
11285 
11286  /// Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
11288 
11289  /// Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
11291 
11292  /// Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
11294 
11295  /// Acetyl:13C(2): Heavy acetylation.
11297 
11298  /// dHex(1)Hex(2): Hex2dHex1.
11300 
11301  /// dHex(1)Hex(3): Hex3dHex1.
11303 
11304  /// dHex(1)Hex(4): Hex4dHex1.
11306 
11307  /// dHex(1)Hex(5): Hex5dHex1.
11309 
11310  /// dHex(1)Hex(6): Hex6dHex1.
11312 
11313  /// methylsulfonylethyl: Reaction with methyl vinyl sulfone.
11315 
11316  /// ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
11318 
11319  /// phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
11321 
11322  /// PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linkage.
11324 
11325  /// Homocysteic_acid: Methionine oxidation to homocysteic acid.
11327 
11328  /// Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
11330 
11331  /// 3-phosphoglyceryl: 3-phosphoglyceryl.
11333 
11334  /// HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
11335  UNIMOD_HN2_mustard = 100001388,
11336 
11337  /// HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
11338  UNIMOD_HN3_mustard = 100001389,
11339 
11340  /// Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
11342 
11343  /// NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
11345 
11346  /// DiART6plex: Representative mass and accurate mass for 114.
11347  UNIMOD_DiART6plex = 100001392,
11348 
11349  /// DiART6plex115: Accurate mass for DiART6plex 115.
11351 
11352  /// DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
11354 
11355  /// DiART6plex117: Accurate mass for DiART6plex 117.
11357 
11358  /// DiART6plex118: Accurate mass for DiART6plex 118.
11360 
11361  /// Iodoacetanilide: Iodoacetanilide derivative.
11363 
11364  /// Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
11366 
11367  /// Dap-DSP: Diaminopimelic acid-DSP monolinked.
11368  UNIMOD_Dap_DSP = 100001399,
11369 
11370  /// MurNAc: N-Acetylmuramic acid.
11371  UNIMOD_MurNAc = 100001400,
11372 
11373  /// Label:2H(7)15N(4): Label:2H(7)15N(4).
11375 
11376  /// Label:2H(6)15N(1): Label:2H(6)15N(1).
11378 
11379  /// EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
11381 
11382  /// EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
11384 
11385  /// Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
11387 
11388  /// Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
11390 
11391  /// dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
11393 
11394  /// dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
11396 
11397  /// s-GlcNAc: O3S1HexNAc1.
11398  UNIMOD_s_GlcNAc = 100001412,
11399 
11400  /// PhosphoHex(2): H1O3P1Hex2.
11402 
11403  /// Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
11405 
11406  /// 15N-oxobutanoic: Loss of ammonia (15N).
11408 
11409  /// spermine: Spermine adduct.
11410  UNIMOD_spermine = 100001420,
11411 
11412  /// spermidine: Spermidine adduct.
11413  UNIMOD_spermidine = 100001421,
11414 
11415  /// Biotin:Thermo-21330: Biotin_PEG4.
11417 
11418  /// Pentose: Pentose.
11419  UNIMOD_Pentose = 100001425,
11420 
11421  /// Hex(1)Pent(1): Hex Pent.
11423 
11424  /// Hex(1)HexA(1): Hex HexA.
11426 
11427  /// Hex(1)Pent(2): Hex Pent(2).
11429 
11430  /// Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
11432 
11433  /// Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
11435 
11436  /// Hex(1)NeuAc(1): Hex NeuAc.
11438 
11439  /// Hex(1)NeuGc(1): Hex NeuGc.
11441 
11442  /// HexNAc(3): HexNAc(3).
11443  UNIMOD_HexNAc_3_ = 100001433,
11444 
11445  /// HexNAc(1)NeuAc(1): HexNAc NeuAc.
11447 
11448  /// HexNAc(1)NeuGc(1): HexNAc NeuGc.
11450 
11451  /// Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
11453 
11454  /// Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
11456 
11457  /// Hex(2)HexNAc(1): Hex(2) HexNAc.
11459 
11460  /// Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
11462 
11463  /// Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
11465 
11466  /// Hex(3)Phos(1): Hex(3) Phos.
11468 
11469  /// Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
11471 
11472  /// Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
11474 
11475  /// Hex(2)NeuAc(1): Hex(2) NeuAc.
11477 
11478  /// dHex(2)Hex(2): Hex2 dHex2.
11480 
11481  /// dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
11483 
11484  /// Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
11486 
11487  /// Hex(4): Hex(4).
11488  UNIMOD_Hex_4_ = 100001448,
11489 
11490  /// dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
11492 
11493  /// Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc.
11495 
11496  /// Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
11498 
11499  /// Hex(4)HexNAc(2): Hex(4) HexNAc(2).
11501 
11502  /// dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
11504 
11505  /// dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
11507 
11508  /// Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
11510 
11511  /// Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
11513 
11514  /// Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
11516 
11517  /// Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
11519 
11520  /// dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
11522 
11523  /// Hex(7)HexNAc(1): Hex(7) HexNAc.
11525 
11526  /// Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc.
11528 
11529  /// dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
11531 
11532  /// dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
11534 
11535  /// Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
11537 
11538  /// Hex(6)HexNAc(2): Hex(6) HexNAc(2).
11540 
11541  /// Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
11543 
11544  /// dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
11546 
11547  /// Hex(5)HexNAc(3): Hex(5) HexNAc(3).
11549 
11550  /// Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
11552 
11553  /// Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
11555 
11556  /// dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
11558 
11559  /// dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
11561 
11562  /// Hex(8)HexNAc(1): Hex(8) HexNAc.
11564 
11565  /// dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
11567 
11568  /// dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
11570 
11571  /// dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
11573 
11574  /// dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
11576 
11577  /// dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
11579 
11580  /// Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
11582 
11583  /// Hex(7)HexNAc(2): Hex(7) HexNAc(2).
11585 
11586  /// dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
11588 
11589  /// Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
11591 
11592  /// Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
11594 
11595  /// dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
11597 
11598  /// dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
11600 
11601  /// Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
11603 
11604  /// Hex(6)HexNAc(3): Hex(6) HexNAc(3).
11606 
11607  /// Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc.
11609 
11610  /// Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
11612 
11613  /// Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
11615 
11616  /// Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
11618 
11619  /// dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3).
11621 
11622  /// dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
11624 
11625  /// dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
11627 
11628  /// Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
11630 
11631  /// Hex(4)HexNAc(5): Hex(4) HexNAc(5).
11633 
11634  /// dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
11636 
11637  /// dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
11639 
11640  /// dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
11642 
11643  /// dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
11645 
11646  /// dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc.
11648 
11649  /// Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
11651 
11652  /// Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
11654 
11655  /// Hex(8)HexNAc(2): Hex(8) HexNAc(2).
11657 
11658  /// dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
11660 
11661  /// dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc.
11663 
11664  /// dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
11666 
11667  /// dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
11669 
11670  /// dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
11672 
11673  /// dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
11675 
11676  /// dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
11678 
11679  /// dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
11681 
11682  /// Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
11684 
11685  /// Hex(7)HexNAc(3): Hex(7) HexNAc(3).
11687 
11688  /// dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
11690 
11691  /// Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
11693 
11694  /// Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
11696 
11697  /// dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
11699 
11700  /// dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
11702 
11703  /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
11705 
11706  /// Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
11708 
11709  /// Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
11711 
11712  /// dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
11714 
11715  /// Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
11717 
11718  /// dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
11720 
11721  /// dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
11723 
11724  /// dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
11726 
11727  /// dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
11729 
11730  /// dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
11732 
11733  /// Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
11735 
11736  /// Hex(9)HexNAc(2): Hex(9) HexNAc(2).
11738 
11739  /// Hex(4)HexNAc(6): Hex(4) HexNAc(6).
11741 
11742  /// dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
11744 
11745  /// dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc.
11747 
11748  /// dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
11750 
11751  /// dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
11753 
11754  /// dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
11756 
11757  /// dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
11759 
11760  /// dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
11762 
11763  /// Hex(3)HexNAc(7): Hex(3) HexNAc(7).
11765 
11766  /// dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
11768 
11769  /// dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
11771 
11772  /// dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
11774 
11775  /// dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
11777 
11778  /// Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
11780 
11781  /// dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
11783 
11784  /// dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
11786 
11787  /// dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
11789 
11790  /// Hex(7)HexNAc(4): Hex(7) HexNAc(4).
11792 
11793  /// dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
11795 
11796  /// Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
11798 
11799  /// Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
11801 
11802  /// dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
11804 
11805  /// dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
11807 
11808  /// dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
11810 
11811  /// dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
11813 
11814  /// dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
11816 
11817  /// Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
11819 
11820  /// Hex(6)HexNAc(5): Hex(6) HexNAc(5).
11822 
11823  /// Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
11825 
11826  /// Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
11828 
11829  /// dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
11831 
11832  /// Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
11834 
11835  /// dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
11837 
11838  /// HexNAc(3)Sulf(1): HexNAc(3) Sulf.
11840 
11841  /// Hex(3)HexNAc(1): Hex(3) HexNAc.
11843 
11844  /// Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
11846 
11847  /// HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
11849 
11850  /// HexNAc(1)Kdn(2): HexNAc Kdn(2).
11852 
11853  /// Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
11855 
11856  /// Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
11858 
11859  /// HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
11861 
11862  /// Hex(4)Phos(1): Hex(4) Phos.
11864 
11865  /// Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
11867 
11868  /// Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
11870 
11871  /// dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
11873 
11874  /// dHex(1)HexNAc(3): DHex HexNAc(3).
11876 
11877  /// dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn.
11879 
11880  /// Hex(1)HexNAc(3): Hex HexNAc(3).
11882 
11883  /// HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
11885 
11886  /// dHex(2)Hex(3): DHex(2) Hex(3).
11888 
11889  /// Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
11891 
11892  /// dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
11894 
11895  /// dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
11897 
11898  /// dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
11900 
11901  /// Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
11903 
11904  /// Hex(5): Hex(5).
11905  UNIMOD_Hex_5_ = 100001590,
11906 
11907  /// HexNAc(4): HexNAc(4).
11908  UNIMOD_HexNAc_4_ = 100001591,
11909 
11910  /// HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
11912 
11913  /// dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc.
11915 
11916  /// dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
11918 
11919  /// Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
11921 
11922  /// dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
11924 
11925  /// dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
11927 
11928  /// Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
11930 
11931  /// Hex(4)HexNAc(1): Hex(4) HexNAc.
11933 
11934  /// Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
11936 
11937  /// Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
11939 
11940  /// Hex(5)Phos(1): Hex(5) Phos.
11942 
11943  /// dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
11945 
11946  /// dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
11948 
11949  /// dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
11951 
11952  /// dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
11954 
11955  /// Hex(2)HexNAc(3): Hex(2) HexNAc(3).
11957 
11958  /// Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
11960 
11961  /// dHex(2)Hex(4): DHex(2) Hex(4).
11963 
11964  /// dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
11966 
11967  /// dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
11969 
11970  /// dHex(1)HexNAc(4): DHex HexNAc(4).
11972 
11973  /// Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
11975 
11976  /// dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn.
11978 
11979  /// Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
11981 
11982  /// Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
11984 
11985  /// dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
11987 
11988  /// dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
11990 
11991  /// Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
11993 
11994  /// dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
11996 
11997  /// dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
11999 
12000  /// Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
12002 
12003  /// Hex(5)HexNAc(1): Hex(5) HexNAc.
12005 
12006  /// HexNAc(5): HexNAc(5).
12007  UNIMOD_HexNAc_5_ = 100001628,
12008 
12009  /// dHex(1)Hex(1)HexNAc(2)NeuGc(1): DHex Hex HexNAc(2) NeuGc.
12011 
12012  /// Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
12014 
12015  /// Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
12017 
12018  /// Hex(5)Phos(3): Hex(5) Phos(3).
12020 
12021  /// Hex(6)Phos(1): Hex(6) Phos.
12023 
12024  /// dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
12026 
12027  /// dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
12029 
12030  /// Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
12032 
12033  /// dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
12035 
12036  /// Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
12038 
12039  /// dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
12041 
12042  /// dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
12044 
12045  /// dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
12047 
12048  /// Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
12050 
12051  /// dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
12053 
12054  /// dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn.
12056 
12057  /// dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
12059 
12060  /// Hex(2)HexNAc(4): Hex(2) HexNAc(4).
12062 
12063  /// Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
12065 
12066  /// dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
12068 
12069  /// Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
12071 
12072  /// dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
12074 
12075  /// dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
12077 
12078  /// dHex(1)HexNAc(5): DHex HexNAc(5).
12080 
12081  /// dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc.
12083 
12084  /// dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
12086 
12087  /// Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
12089 
12090  /// dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
12092 
12093  /// dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc.
12095 
12096  /// dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
12098 
12099  /// Hex(6)Phos(3): Hex(6) Phos(3).
12101 
12102  /// dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
12104 
12105  /// dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc.
12107 
12108  /// Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
12110 
12111  /// dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
12113 
12114  /// Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
12116 
12117  /// Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
12119 
12120  /// dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
12122 
12123  /// dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
12125 
12126  /// dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
12128 
12129  /// dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
12131 
12132  /// dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
12134 
12135  /// dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
12137 
12138  /// Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
12140 
12141  /// dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
12143 
12144  /// dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
12146 
12147  /// dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
12149 
12150  /// dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
12152 
12153  /// Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
12155 
12156  /// dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
12158 
12159  /// dHex(2)HexNAc(5): DHex(2) HexNAc(5).
12161 
12162  /// Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
12164 
12165  /// dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc.
12167 
12168  /// dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
12170 
12171  /// dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc.
12173 
12174  /// Hex(2)HexNAc(5): Hex(2) HexNAc(5).
12176 
12177  /// dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
12179 
12180  /// Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
12182 
12183  /// dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
12185 
12186  /// dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
12188 
12189  /// Hex(7)Phos(3): Hex(7) Phos(3).
12191 
12192  /// dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
12194 
12195  /// Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc.
12197 
12198  /// dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
12200 
12201  /// Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
12203 
12204  /// dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
12206 
12207  /// Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
12209 
12210  /// dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
12212 
12213  /// dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
12215 
12216  /// dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
12218 
12219  /// Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
12221 
12222  /// dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
12224 
12225  /// dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
12227 
12228  /// dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
12230 
12231  /// Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
12233 
12234  /// dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
12236 
12237  /// dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
12239 
12240  /// dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
12242 
12243  /// dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
12245 
12246  /// Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
12248 
12249  /// Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
12251 
12252  /// Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
12254 
12255  /// dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
12257 
12258  /// dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc.
12260 
12261  /// dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
12263 
12264  /// Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
12266 
12267  /// dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
12269 
12270  /// dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
12272 
12273  /// Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
12275 
12276  /// dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc.
12278 
12279  /// dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
12281 
12282  /// Hex(8)Phos(3): Hex(8) Phos(3).
12284 
12285  /// dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
12287 
12288  /// Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
12290 
12291  /// dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
12293 
12294  /// dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
12296 
12297  /// dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
12299 
12300  /// Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
12302 
12303  /// dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
12305 
12306  /// Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
12308 
12309  /// dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn.
12311 
12312  /// dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
12314 
12315  /// dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
12317 
12318  /// dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
12320 
12321  /// Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
12323 
12324  /// dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc.
12326 
12327  /// dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
12329 
12330  /// dHex(2)Hex(3)HexNAc(3)NeuGc(1): DHex(2) Hex(3) HexNAc(3) NeuGc.
12332 
12333  /// Hex(9)Phos(3): Hex(9) Phos(3).
12335 
12336  /// dHex(2)HexNAc(7): DHex(2) HexNAc(7).
12338 
12339  /// Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
12341 
12342  /// Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
12344 
12345  /// dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
12347 
12348  /// dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
12350 
12351  /// dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
12353 
12354  /// Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
12356 
12357  /// dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
12359 
12360  /// dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
12362 
12363  /// Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
12365 
12366  /// Hex(10)Phos(3): Hex(10) Phos(3).
12368 
12369  /// dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
12371 
12372  /// Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
12374 
12375  /// Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
12377 
12378  /// Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
12380 
12381  /// dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
12383 
12384  /// Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
12386 
12387  /// dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
12389 
12390  /// dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
12392 
12393  /// dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
12395 
12396  /// Hex(3)HexNAc(3): Hex(3) HexNAc(3).
12398 
12399  /// dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
12401 
12402  /// dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
12404 
12405  /// dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
12407 
12408  /// dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
12410 
12411  /// dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
12413 
12414  /// Hex(4)HexNAc(3): Hex(4) HexNAc(3).
12416 
12417  /// dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
12419 
12420  /// dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
12422 
12423  /// Hex(3)HexNAc(5): Hex(3) HexNAc(5).
12425 
12426  /// Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc.
12428 
12429  /// dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
12431 
12432  /// dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
12434 
12435  /// Hex(3)HexNAc(6): Hex(3) HexNAc(6).
12437 
12438  /// Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
12440 
12441  /// dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4).
12443 
12444  /// Hex(6)HexNAc(4): Hex(6) HexNAc(4).
12446 
12447  /// Hex(5)HexNAc(5): Hex(5) HexNAc(5).
12449 
12450  /// dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
12452 
12453  /// dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc.
12455 
12456  /// dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
12458 
12459  /// dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
12461 
12462  /// dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
12464 
12465  /// Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
12467 
12468  /// Label:13C(2)15N(2): 13C(2) 15N(2).
12470 
12471  /// Xlink:DSS-NH2: Ammonium-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.
12473 
12474  /// NQIGG: SUMOylation by Giardia lamblia.
12475  UNIMOD_NQIGG = 100001799,
12476 
12477  /// Carboxyethylpyrrole: Carboxyethylpyrrole.
12479 
12480  /// Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
12482 
12483  /// GEE: Transamidation of glycine ethyl ester to glutamine.
12484  UNIMOD_GEE = 100001824,
12485 
12486  /// RNPXL: Simulate peptide-RNA conjugates.
12487  UNIMOD_RNPXL = 100001825,
12488 
12489  /// Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
12491 
12492  /// Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
12494 
12495  /// unit: A unit of measurement is a standardized quantity of a physical quality.
12496  UO_unit = 200000000,
12497 
12498  /// length unit: A unit which is a standard measure of the distance between two points.
12499  UO_length_unit = 200000001,
12500 
12501  /// mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object.
12502  UO_mass_unit = 200000002,
12503 
12504  /// time unit: A unit which is a standard measure of the dimension in which events occur in sequence.
12505  UO_time_unit = 200000003,
12506 
12507  /// electric current unit: A unit which is a standard measure of the flow of electric charge.
12509 
12510  /// temperature unit: A unit which is a standard measure of the average kinetic energy of the particles in a sample of matter.
12511  UO_temperature_unit = 200000005,
12512 
12513  /// substance unit: A unit which is a standardised quantity of an element or compound with uniform composition.
12514  UO_substance_unit = 200000006,
12515 
12516  /// luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted by a light source in a particular direction.
12518 
12519  /// meter: A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second.
12520  UO_meter = 200000008,
12521 
12522  /// kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France.
12523  UO_kilogram = 200000009,
12524 
12525  /// second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation corresponding to the transition between the two hyperfine levels of the ground state of the caesium 133 atom.
12526  UO_second = 200000010,
12527 
12528  /// ampere: An electric current unit which is equal to the constant current which, if maintained in two straight parallel conductors of infinite length, of negligible circular cross-section, and placed 1 m apart in vacuum, would produce between these conductors a force equal to 2 x 10^[-7] newton per meter of length.
12529  UO_ampere = 200000011,
12530 
12531  /// kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic temperature of the triple point of water.
12532  UO_kelvin = 200000012,
12533 
12534  /// mole: A substance unit which is equal to the amount of substance of a molecular system which contains as many elementary entities as there are atoms in 0.012 kilogram of carbon 12.
12535  UO_mole = 200000013,
12536 
12537  /// candela: A luminous intensity unit which equal to the luminous intensity, in a given direction, of a source that emits monochromatic radiation of frequency 540 x 1012 hertz and that has a radiant intensity in that direction of 1/683 watt per steradian.
12538  UO_candela = 200000014,
12539 
12540  /// centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
12541  UO_centimeter = 200000015,
12542 
12543  /// millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
12544  UO_millimeter = 200000016,
12545 
12546  /// micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
12547  UO_micrometer = 200000017,
12548 
12549  /// nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m.
12550  UO_nanometer = 200000018,
12551 
12552  /// angstrom: A length unit which is equal to 10 [-10] m.
12553  UO_angstrom = 200000019,
12554 
12555  /// picometer: A length unit which is equal to 10^[-12] m.
12556  UO_picometer = 200000020,
12557 
12558  /// gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
12559  UO_gram = 200000021,
12560 
12561  /// milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
12562  UO_milligram = 200000022,
12563 
12564  /// microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
12565  UO_microgram = 200000023,
12566 
12567  /// nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g.
12568  UO_nanogram = 200000024,
12569 
12570  /// picogram: A mass unit which is equal to 10^[-12] g.
12571  UO_picogram = 200000025,
12572 
12573  /// femtogram: A mass unit which is equal to 10^[-15] g.
12574  UO_femtogram = 200000026,
12575 
12576  /// degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zeros at different points. The Centigrade scale has its zero at 273.15 K.
12577  UO_degree_celsius = 200000027,
12578 
12579  /// millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
12580  UO_millisecond = 200000028,
12581 
12582  /// microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
12583  UO_microsecond = 200000029,
12584 
12585  /// picosecond: A time unit which is equal to 10^[-12] s.
12586  UO_picosecond = 200000030,
12587 
12588  /// minute: A time unit which is equal to 60 seconds.
12589  UO_minute = 200000031,
12590 
12591  /// hour: A time unit which is equal to 3600 seconds or 60 minutes.
12592  UO_hour = 200000032,
12593 
12594  /// day: A time unit which is equal to 24 hours.
12595  UO_day = 200000033,
12596 
12597  /// week: A time unit which is equal to 7 days.
12598  UO_week = 200000034,
12599 
12600  /// month: A time unit which is approximately equal to the length of time of one of cycle of the moon's phases which in science is taken to be equal to 30 days.
12601  UO_month = 200000035,
12602 
12603  /// year: A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days.
12604  UO_year = 200000036,
12605 
12606  /// milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3] A.
12607  UO_milliampere = 200000037,
12608 
12609  /// microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6] A.
12610  UO_microampere = 200000038,
12611 
12612  /// micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
12613  UO_micromole = 200000039,
12614 
12615  /// millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
12616  UO_millimole = 200000040,
12617 
12618  /// nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol.
12619  UO_nanomole = 200000041,
12620 
12621  /// picomole: A substance unit equal to 10^[-12] mol.
12622  UO_picomole = 200000042,
12623 
12624  /// femtomole: A substance unit equal to 10^[-15] mol.
12625  UO_femtomole = 200000043,
12626 
12627  /// attomole: A substance unit equal to 10^[-18] mol.
12628  UO_attomole = 200000044,
12629 
12630  /// base unit: A unit which is one of a particular measure to which all measures of that type can be related.
12631  UO_base_unit = 200000045,
12632 
12633  /// derived unit: A unit which is derived from base units.
12635 
12636  /// area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface.
12637  UO_area_unit = 200000047,
12638 
12639  /// acceleration unit: A unit which is a standard measure of the rate of change of velocity in either speed or direction.
12641 
12642  /// angular velocity unit: A unit which is a standard measure of the rate of angular movement about an axis; the angle rotated in a given time.
12644 
12645  /// angular acceleration unit: A unit which is a standard measure of the rate of change of angular velocity.
12647 
12648  /// concentration unit: A unit which represents a standard measurement of how much of a given substance there is mixed with another substance.
12650 
12651  /// mass density unit: A density unit which is a standard measure of the mass of a substance in a given volume.
12653 
12654  /// luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given area.
12655  UO_luminance_unit = 200000053,
12656 
12657  /// area density unit: A density unit which is a standard measure of the mass exerting an influence on a given area.
12659 
12660  /// molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
12661  UO_molar_mass_unit = 200000055,
12662 
12663  /// molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance containing 6.02 x 1023 atoms or molecules.
12665 
12666  /// momentum unit: A unit which is a standard measure of the quantity of motion measured by the product of mass and velocity.
12667  UO_momentum_unit = 200000057,
12668 
12669  /// rotational frequency unit: A unit which is a standard measure of the number of rotations in a given time.
12671 
12672  /// specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (the reciprocal of density).
12674 
12675  /// speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in the same physical units of measurement as velocity, but does not contain the element of direction that velocity has. Speed is thus the magnitude component of velocity.
12677 
12678  /// unit of molarity: A concentration unit which is a standard measure of the number of moles of a given substance per liter of solution.
12679  UO_unit_of_molarity = 200000061,
12680 
12681  /// molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L).
12682  UO_molar = 200000062,
12683 
12684  /// millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M.
12685  UO_millimolar = 200000063,
12686 
12687  /// micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M.
12688  UO_micromolar = 200000064,
12689 
12690  /// nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9] M.
12691  UO_nanomolar = 200000065,
12692 
12693  /// picomolar: A unit of molarity which is equal to 10^[-12] M.
12694  UO_picomolar = 200000066,
12695 
12696  /// unit of molality: A concentration unit which is a standard measure of the number of moles of a given substance per kilogram of solvent.
12697  UO_unit_of_molality = 200000067,
12698 
12699  /// molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram of solvent (mol/kg).
12700  UO_molal = 200000068,
12701 
12702  /// millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m.
12703  UO_millimolal = 200000069,
12704 
12705  /// micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m.
12706  UO_micromolal = 200000070,
12707 
12708  /// nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m.
12709  UO_nanomolal = 200000071,
12710 
12711  /// picomolal: A molality unit which is equal to 10^[-12] m.
12712  UO_picomolal = 200000072,
12713 
12714  /// femtomolar: A unit of molarity which is equal to 10^[-15] M.
12715  UO_femtomolar = 200000073,
12716 
12717  /// unit of normality: A unit of concentration which highlights the chemical nature of salts.
12719 
12720  /// normal: A unit of concentration which is one gram equivalent of a solute per liter of solution. A gram equivalent weight or equivalent is a measure of the reactive capacity of a given molecule.
12721  UO_normal = 200000075,
12722 
12723  /// mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of the total number of moles in a solution.
12724  UO_mole_fraction = 200000076,
12725 
12726  /// meter per second per second: An acceleration unit which is equal to the acceleration an object changing its velocity by 1meter/s over a time period that equals one second.
12728 
12729  /// radian per second per second: An angular unit acceleration which is equal to the angular acceleration of an object changing its angular velocity by 1rad/s over a time period that equals one second.
12731 
12732  /// radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minute).
12734 
12735  /// square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter long.
12736  UO_square_meter = 200000080,
12737 
12738  /// square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2].
12740 
12741  /// square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2].
12743 
12744  /// kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in cubic meters.
12746 
12747  /// gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided by the volume in cubic centimeters.
12749 
12750  /// candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radiating from a surface whose area is one square meter.
12752 
12753  /// kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in meters squared.
12755 
12756  /// kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical element or chemical compound.
12758 
12759  /// gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element or chemical compound.
12760  UO_gram_per_mole = 200000088,
12761 
12762  /// cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a substance in the form of a solid, liquid, or gas.
12764 
12765  /// cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one mole of a substance in the form of a solid, liquid, or gas.
12767 
12768  /// kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass object with a speed of one meter per second.
12770 
12771  /// turns per second: A rotational frequency unit which is equal to the number complete turn in a period of time that equals to 1 second.
12772  UO_turns_per_second = 200000092,
12773 
12774  /// cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by one kilogram of a particular substance.
12776 
12777  /// meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter distance in one second.
12778  UO_meter_per_second = 200000094,
12779 
12780  /// volume unit: A unit which is a standard measure of the amount of space occupied by any substance, whether solid, liquid, or gas.
12781  UO_volume_unit = 200000095,
12782 
12783  /// cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length. One cubic meter equals to 1000 liters.
12784  UO_cubic_meter = 200000096,
12785 
12786  /// cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3], or to 1 ml.
12787  UO_cubic_centimeter = 200000097,
12788 
12789  /// milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
12790  UO_milliliter = 200000098,
12791 
12792  /// liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter.
12793  UO_liter = 200000099,
12794 
12795  /// cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L.
12796  UO_cubic_decimeter = 200000100,
12797 
12798  /// microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
12799  UO_microliter = 200000101,
12800 
12801  /// nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L.
12802  UO_nanoliter = 200000102,
12803 
12804  /// picoliter: A volume unit which is equal to 10^[-12] L.
12805  UO_picoliter = 200000103,
12806 
12807  /// femtoliter: A volume unit which is equal to 10^[-15] L.
12808  UO_femtoliter = 200000104,
12809 
12810  /// frequency unit: A unit which is a standard measure of the number of repetitive actions in a particular time.
12811  UO_frequency_unit = 200000105,
12812 
12813  /// hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second.
12814  UO_hertz = 200000106,
12815 
12816  /// force unit: A unit which is a standard measure of the force is applied when a mass is accelerated.
12817  UO_force_unit = 200000107,
12818 
12819  /// newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass of 1 Kg in the direction of the force.
12820  UO_newton = 200000108,
12821 
12822  /// pressure unit: A unit which is a standard measure of the force applied to a given area.
12823  UO_pressure_unit = 200000109,
12824 
12825  /// pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 newton spread over a surface of 1 m^[2].
12826  UO_pascal = 200000110,
12827 
12828  /// energy unit: A unit which is a standard measure of the work done by a certain force (gravitational, electric, magnetic, force of inertia, etc).
12829  UO_energy_unit = 200000111,
12830 
12831  /// joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object 1 meter in the direction of the force.
12832  UO_joule = 200000112,
12833 
12834  /// power unit: A unit which is a standard measure power or the rate of doing work.
12835  UO_power_unit = 200000113,
12836 
12837  /// watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per second.
12838  UO_watt = 200000114,
12839 
12840  /// illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area.
12841  UO_illuminance_unit = 200000115,
12842 
12843  /// lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 m^[2].
12844  UO_lux = 200000116,
12845 
12846  /// luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
12848 
12849  /// lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point source of 1 candela.
12850  UO_lumen = 200000118,
12851 
12852  /// catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst.
12854 
12855  /// katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second, such as the amount of an enzyme needed to transform one mole of substrate per second.
12856  UO_katal = 200000120,
12857 
12858  /// angle unit: A unit which is a standard measure of the figure or space formed by the junction of two lines or planes.
12859  UO_angle_unit = 200000121,
12860 
12861  /// plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the same plane.
12862  UO_plane_angle_unit = 200000122,
12863 
12864  /// radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc equal in length to the radius of the circle, approximately 57 degrees 17 minutes and 44.6 seconds.
12865  UO_radian = 200000123,
12866 
12867  /// solid angle unit: A unit which is a standard measure of the angle formed by three or more planes intersecting at a common point.
12868  UO_solid_angle_unit = 200000124,
12869 
12870  /// steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere by an area on the surface of the sphere that is equal to the radius squared.
12871  UO_steradian = 200000125,
12872 
12873  /// radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radiation source as well as the amount of radiation absorbed or deposited in a specific material by a radiation source.
12874  UO_radiation_unit = 200000127,
12875 
12876  /// activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disintegration) rate of a radioactive substance.
12878 
12879  /// absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation to unit mass of matter such as tissue.
12881 
12882  /// dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its biological effect.
12884 
12885  /// exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radiation to ionize air and thereby create electric charges which can be collected and measured.
12886  UO_exposure_unit = 200000131,
12887 
12888  /// becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second (dps).
12889  UO_becquerel = 200000132,
12890 
12891  /// curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which there are 3.7 x 10^[10] atom disintegration per second (dps).
12892  UO_curie = 200000133,
12893 
12894  /// gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
12895  UO_gray = 200000134,
12896 
12897  /// rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
12898  UO_rad = 200000135,
12899 
12900  /// roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive and negative charges of one electrostatic unit of charge in 1 cm^[3] of air at standard temperature and pressure (STP). This corresponds to the generation of approximately 2.0810^[9] ion pairs.
12901  UO_roentgen = 200000136,
12902 
12903  /// sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by one kilogram of matter.
12904  UO_sievert = 200000137,
12905 
12906  /// millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv.
12907  UO_millisievert = 200000138,
12908 
12909  /// microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv.
12910  UO_microsievert = 200000139,
12911 
12912  /// Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one sievert or 1 Sv. 1 Sv is equal to 100 rem.
12914 
12915  /// microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy.
12916  UO_microgray = 200000141,
12917 
12918  /// milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy.
12919  UO_milligray = 200000142,
12920 
12921  /// nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] Gy.
12922  UO_nanogray = 200000143,
12923 
12924  /// nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 10^[-9] Sv.
12925  UO_nanosievert = 200000144,
12926 
12927  /// millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-3] Ci.
12928  UO_millicurie = 200000145,
12929 
12930  /// microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6] Ci.
12931  UO_microcurie = 200000146,
12932 
12933  /// disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per minute or there is one atom disintegration per minute.
12935 
12936  /// counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissions produced by ionizing radiation in one minute.
12938 
12939  /// nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s.
12940  UO_nanosecond = 200000150,
12941 
12942  /// century: A time unit which is equal to 100 years.
12943  UO_century = 200000151,
12944 
12945  /// half life: A time unit which represents the period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration.
12946  UO_half_life = 200000152,
12947 
12948  /// foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an area 1 foot^[2]. One footcandle is equal to 10.76 lux.
12949  UO_foot_candle = 200000153,
12950 
12951  /// irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a surface, per unit area.
12952  UO_irradiance_unit = 200000154,
12953 
12954  /// watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one square meter surface area.
12956 
12957  /// einstein per square meter per second: An irradiance unit which is equal to one einstein per square meter per second. One einstein is one mole of photons, regardless of their frequency. Therefore, the number of photons in an einstein is Avogadro's number.
12959 
12960  /// light unit: A unit which is a standard measure of the intensity of light.
12961  UO_light_unit = 200000157,
12962 
12963  /// watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power incident per steradian solid angle per one square meter projected area of the source, as viewed from the given direction.
12965 
12966  /// radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiation.
12968 
12969  /// microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per square meter per second or 10^[-6] microeinstein/sm^[2].
12971 
12972  /// radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through space or through a material medium in the form of electromagnetic waves.
12973  UO_radiance_unit = 200000161,
12974 
12975  /// watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second cubed per steradian.
12977 
12978  /// mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixture as a percentage of the mass of the entire mixture.
12979  UO_mass_percentage = 200000163,
12980 
12981  /// mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture.
12983 
12984  /// volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution.
12986 
12987  /// parts per notation unit: A dimensionless concentration notation which describes the amount of one substance in another. It is the ratio of the amount of the substance of interest to the amount of that substance plus the amount of the substance.
12989 
12990  /// parts per hundred: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 100 regardless of the units of measure as long as they are the same.
12992 
12993  /// parts per thousand: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1000 regardless of the units of measure as long as they are the same.
12995 
12996  /// parts per million: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[6].
12998 
12999  /// parts per billion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure as long as they are the same or 1 part in 10^[9].
13001 
13002  /// parts per trillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[12].
13004 
13005  /// parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given substance in a total amount of 1,000,000,000,000 regardless of the units of measure used as long as they are the same or 1 part in 10^[15].
13007 
13008  /// gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the volume in milliliter.
13010 
13011  /// kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by the volume in liters.
13013 
13014  /// gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volume in liters.
13015  UO_gram_per_liter = 200000175,
13016 
13017  /// milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters.
13019 
13020  /// unit per volume unit: A concentration unit which is a standard measure of the number of units, as an agreed arbitrary amount, of a given substance per a specific volume of solution.
13022 
13023  /// unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one milliliter.
13025 
13026  /// unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount per one liter.
13027  UO_unit_per_liter = 200000179,
13028 
13029  /// mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in a given volume (density).
13031 
13032  /// enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the conversion of 1 micro mole of substrate per minute.
13033  UO_enzyme_unit = 200000181,
13034 
13035  /// density unit: A unit which is a standard measure of the influence exerted by some mass.
13036  UO_density_unit = 200000182,
13037 
13038  /// linear density unit: A density unit which is a standard measure of the mass exerting an influence on a one-dimensional object.
13040 
13041  /// kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided by one meter.
13043 
13044  /// degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad.
13045  UO_degree = 200000185,
13046 
13047  /// dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a numerical number without any units.
13049 
13050  /// percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
13051  UO_percent = 200000187,
13052 
13053  /// pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3.14159 which is the ratio of a circle's circumference to its diameter in Euclidean geometry.
13054  UO_pi = 200000188,
13055 
13056  /// count unit: A dimensionless unit which denotes a simple count of things.
13057  UO_count_unit = 200000189,
13058 
13059  /// ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.
13060  UO_ratio = 200000190,
13061 
13062  /// fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).
13063  UO_fraction = 200000191,
13064 
13065  /// molecule count: A dimensionless count unit which denotes the number of molecules.
13066  UO_molecule_count = 200000192,
13067 
13068  /// purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial.
13070 
13071  /// confluence percentage: A dimensionless percent unit which denotes the density of an attached or monolayer culture (e.g., cell culture).
13073 
13074  /// degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahrenheit is equal to negative 40 degrees Celsius.
13076 
13077  /// pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+).
13078  UO_pH = 200000196,
13079 
13080  /// liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogram of a particular substance.
13082 
13083  /// milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogram or 10^[-3] l/kg.
13085 
13086  /// microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogram or 10^[-6] l/kg.
13088 
13089  /// cell concentration unit: A concentration unit which denotes the average cell number in a given volume.
13091 
13092  /// cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 milliliter.
13094 
13095  /// catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amount of the action of a catalyst in a given volume.
13097 
13098  /// katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one cubic meter.
13100 
13101  /// katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a catalyst in a given volume of one thousandth of a cubic meter.
13102  UO_katal_per_liter = 200000204,
13103 
13104  /// volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solute in the total volume of the resulting solution.
13106 
13107  /// milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one cubic meter of solution.
13109 
13110  /// milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of solute in one liter of solution.
13112 
13113  /// gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters.
13115 
13116  /// deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
13117  UO_deciliter = 200000209,
13118 
13119  /// colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers.
13121 
13122  /// plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given volume.
13124 
13125  /// colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a given volume.
13127 
13128  /// colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers in one milliliter.
13130 
13131  /// plaque forming unit per volume: A concentration unit which a measure of plague forming units in a given volume.
13133 
13134  /// plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in one milliliter.
13136 
13137  /// disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioactive material in which one nucleus decays per second or there is one atom disintegration per second.
13139 
13140  /// electric potential difference unit: A unit which is a standard measure of the work done per unit charge as a charge is moved between two points in an electric field.
13142 
13143  /// volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
13144  UO_volt = 200000218,
13145 
13146  /// electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a body (either positive or negative) and construed as an excess or deficiency of electrons.
13147  UO_electric_charge = 200000219,
13148 
13149  /// coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of 1 ampere in 1 second.
13150  UO_coulomb = 200000220,
13151 
13152  /// dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the mass of an unbound atom of the carbon-12 nuclide, at rest and in its ground state.
13153  UO_dalton = 200000221,
13154 
13155  /// kilodalton: A mass unit which is equal to one thousand daltons.
13156  UO_kilodalton = 200000222,
13157 
13158  /// watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt load drawing power for one hour.
13159  UO_watt_hour = 200000223,
13160 
13161  /// kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
13162  UO_kilowatt_hour = 200000224,
13163 
13164  /// magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of the strength and the extent of a magnetic field.
13166 
13167  /// weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn of wire for an interval of one second will induce an electromotive force of one volt.
13168  UO_weber = 200000226,
13169 
13170  /// magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field.
13172 
13173  /// tesla: A magnetic flux density unit which is equal to one weber per square meter.
13174  UO_tesla = 200000228,
13175 
13176  /// volt-hour: A magnetic flux unit which is equal to 3600 Wb.
13177  UO_volt_hour = 200000229,
13178 
13179  /// kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
13180  UO_kilovolt_hour = 200000230,
13181 
13182  /// information unit: A unit which is a standard measure of the amount of information.
13183  UO_information_unit = 200000231,
13184 
13185  /// bit: An information unit which refers to a digit in the binary numeral system, which consists of base 2 digits (ie there are only 2 possible values: 0 or 1).
13186  UO_bit = 200000232,
13187 
13188  /// byte: An information unit which is equal to 8 bits.
13189  UO_byte = 200000233,
13190 
13191  /// kilobyte: An information unit which is equal to 1000 bytes.
13192  UO_kilobyte = 200000234,
13193 
13194  /// megabyte: An information unit which is equal to 1000 kB.
13195  UO_megabyte = 200000235,
13196 
13197  /// image resolution unit: An information unit which is a standard measure of the detail an image holds.
13199 
13200  /// chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial detail in an image.
13202 
13203  /// dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast available in a pixel.
13205 
13206  /// spatial resolution unit: An image resolution unit which is a standard measure of the way luminance and chrominance may be sampled at different levels.
13208 
13209  /// dots per inch: A spatial resolution unit which is a standard measure of the printing resolution, in particular the number of individual dots of ink a printer or toner can produce within a linear one-inch space.
13210  UO_dots_per_inch = 200000240,
13211 
13212  /// micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
13213  UO_micron_pixel = 200000241,
13214 
13215  /// pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a computer display, related to the size of the display in inches and the total number of pixels in the horizontal and vertical directions.
13216  UO_pixels_per_inch = 200000242,
13217 
13218  /// pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels in one millimeter length or width of a digital image divided by the physical length or width of a printed image.
13220 
13221  /// base pair: A count unit which contains one nucleotide.
13222  UO_base_pair = 200000244,
13223 
13224  /// kibibyte: An information unit which is equal to 1024 B.
13225  UO_kibibyte = 200000245,
13226 
13227  /// mebibyte: An information unit which is equal to 1024 KiB.
13228  UO_mebibyte = 200000246,
13229 
13230  /// millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3] V.
13231  UO_millivolt = 200000247,
13232 
13233  /// kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V.
13234  UO_kilovolt = 200000248,
13235 
13236  /// microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6] V.
13237  UO_microvolt = 200000249,
13238 
13239  /// nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12] V.
13240  UO_nanovolt = 200000250,
13241 
13242  /// picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12] V.
13243  UO_picovolt = 200000251,
13244 
13245  /// megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V.
13246  UO_megavolt = 200000252,
13247 
13248  /// surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of molecules at its surface as a result of unbalanced molecular cohesive forces.
13250 
13251  /// newton per meter: A surface tension unit which is equal to one newton per meter.
13252  UO_newton_per_meter = 200000254,
13253 
13254  /// dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
13255  UO_dyne_per_cm = 200000255,
13256 
13257  /// viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow.
13258  UO_viscosity_unit = 200000256,
13259 
13260  /// pascal second: A viscosity unit which is equal to one pascale per second.
13261  UO_pascal_second = 200000257,
13262 
13263  /// poise: A viscosity unit which is equal to one dyne second per square centimeter.
13264  UO_poise = 200000258,
13265 
13266  /// decibel: An ratio unit which is an indicator of sound power per unit area.
13267  UO_decibel = 200000259,
13268 
13269  /// effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that a non-uniform radiation dose has on a human.
13271 
13272  /// conduction unit: A unit which represents a standard measurement of the transmission of an entity through a medium.
13273  UO_conduction_unit = 200000261,
13274 
13275  /// electrical conduction unit: A unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor).
13277 
13278  /// heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature.
13280 
13281  /// siemens: An electrical conduction unit which is equal to A/V.
13282  UO_siemens = 200000264,
13283 
13284  /// watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin.
13286 
13287  /// electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J.
13288  UO_electronvolt = 200000266,
13289 
13290  /// electric field strength unit: The electric field strength is a unit which is a measure of the potential difference between two points some distance apart.
13292 
13293  /// volt per meter: The volt per meter is a unit of electric field strength equal to the a potential difference of 1 volt existing between two points that are 1 meter apart.
13294  UO_volt_per_meter = 200000268,
13295 
13296  /// absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light through a partially absorbing substance, defined as -log10(I/I_0) where I = transmitted light and I_0 = incident light.
13297  UO_absorbance_unit = 200000269,
13298 
13299  /// volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes through a given surface per unit time .
13301 
13302  /// microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a given surface in one minute.
13304 
13305  /// millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep in mercury at zero degrees centigrade on Earth.
13307 
13308  /// milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by the volume in liters.
13310 
13311  /// microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in millliters.
13313 
13314  /// nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided by the volume in milliliters.
13316 
13317  /// amount per container: A concentration unit which is a standard measure of the amount of a substance in a given container.
13319 
13320  /// ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/container upon which the substance is deposited.
13321  UO_ug_disk = 200000277,
13322 
13323  /// nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/container upon which the substance is deposited.
13324  UO_nmole_disk = 200000278,
13325 
13326  /// milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of an agreed arbitrary amount per one milliliter.
13328 
13329  /// rate unit: A unit which represents a standard measurement occurrence of a process per unit time.
13330  UO_rate_unit = 200000280,
13331 
13332  /// count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
13334 
13335  /// count per molar second: A rate unit which is equal to one over one molar second.
13337 
13338  /// kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divided by the surface area in hectares..
13340 
13341  /// count per nanomolar: A rate unit which is equal to one over one nanomolar.
13343 
13344  /// count per molar: A rate unit which is equal to one over one molar.
13345  UO_count_per_molar = 200000285,
13346 
13347  /// microgram per liter: A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters.
13348  UO_microgram_per_liter = 200000301
13349 }; // enum CVID
13350 
13351 
13352 /// Information about an ontology or CV source and a short 'lookup' tag to refer to.
13354 {
13355  /// the short label to be used as a reference tag with which to refer to this particular Controlled Vocabulary source description (e.g., from the cvLabel attribute, in CVParamType elements).
13356  std::string id;
13357 
13358  /// the URI for the resource.
13359  std::string URI;
13360 
13361  /// the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
13362  std::string fullName;
13363 
13364  /// the version of the CV from which the referred-to terms are drawn.
13365  std::string version;
13366 
13367  /// returns true iff id, URI, fullName, and version are all pairwise equal
13368  bool operator==(const CV& that) const;
13369 
13370  /// returns ture iff id, URI, fullName, and version are all empty
13371  bool empty() const;
13372 };
13373 
13374 
13375 /// returns a CV object for the specified namespace (prefix);
13376 /// currently supported namespaces are: MS UO
13377 PWIZ_API_DECL const CV& cv(const std::string& prefix);
13378 
13379 
13380 /// structure for holding CV term info
13382 {
13383  CVID cvid;
13384  std::string id;
13385  std::string name;
13386  std::string def;
13388 
13389  typedef std::vector<CVID> id_list;
13390  id_list parentsIsA;
13391  id_list parentsPartOf;
13392  std::multimap<std::string, CVID> otherRelations;
13393  std::vector<std::string> exactSynonyms;
13394  std::multimap<std::string, std::string> propertyValues;
13395 
13396  CVTermInfo() : cvid((CVID)-1) {}
13397  const std::string& shortName() const;
13398  std::string prefix() const;
13399 };
13400 
13401 
13402 /// returns CV term info for the specified CVID
13403 PWIZ_API_DECL const CVTermInfo& cvTermInfo(CVID cvid);
13404 
13405 
13406 /// returns CV term info for the specified id (accession number)
13407 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const char* id);
13408 PWIZ_API_DECL const CVTermInfo& cvTermInfo(const std::string& id);
13409 
13410 
13411 /// returns true iff child IsA parent in the CV
13412 PWIZ_API_DECL bool cvIsA(CVID child, CVID parent);
13413 
13414 
13415 /// returns vector of all valid CVIDs
13416 PWIZ_API_DECL const std::vector<CVID>& cvids();
13417 
13418 
13419 } // namespace cv
13420 } // namespace pwiz
13421 
13422 
13423 #endif // _CV_HPP_
13424 
13425 
std::string id
Definition: cv.hpp:13384
UO_liter_per_kilogram
liter per kilogram: A specific volume unit which is equal to one liter volume occupied by one kilogra...
Definition: cv.hpp:13081
MS_static_field
static field: An electric or magnetic field that does not change in time.
Definition: cv.hpp:1369
MS_SEQUEST_PeptideRankSp
SEQUEST:PeptideRankSp: The SEQUEST result &#39;Sp&#39; of &#39;Rank/Sp&#39; in out file (peptide). Also called &#39;rsp&#39;.
Definition: cv.hpp:3925
MS_nanospray
nanospray (nanoelectrospray): Electrospray ionization at a flow rate less than ~25 nL/min...
Definition: cv.hpp:1615
MS_contact_address
contact address: Postal address of the contact person or organization.
Definition: cv.hpp:2260
MS_thermospray_inlet
thermospray inlet: A method for generating gas phase ions from a solution of an analyte by rapid heat...
Definition: cv.hpp:325
MS_tandem_mass_spectrometer_OBSOLETE
tandem mass spectrometer: A mass spectrometer designed for mass spectrometry/mass spectrometry...
Definition: cv.hpp:1315
MS_modification_specificity_protein_N_term
modification specificity protein N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6463
MS_KERD_OBSOLETE
KERD (kinetic energy release distribution): Distribution of values of translational kinetic energy re...
Definition: cv.hpp:1135
MS_Mascot_input_parameter
Mascot input parameter: Search engine input parameters specific to Mascot.
Definition: cv.hpp:6577
UNIMOD_4_ONE_Delta_H__2_O__1_
4-ONE+Delta:H(-2)O(-1): Dehydrated 4-Oxononenal Michael adduct.
Definition: cv.hpp:9943
MS_p_value_OBSOLETE
p-value: Quality estimation by p-value.
Definition: cv.hpp:3856
MS_TOPP_SpectraFilterMarkerMower
TOPP SpectraFilterMarkerMower: Applies a filter to peak spectra for marked peaks. ...
Definition: cv.hpp:6706
MS_Triple_Quad_3500
Triple Quad 3500: SCIEX Triple Quad 3500.
Definition: cv.hpp:8068
UNIMOD_Ub_VME
Ub-VME: Ubiquitin vinylmethylester.
Definition: cv.hpp:11086
MS_Applied_Biosystems_instrument_model
Applied Biosystems instrument model: Applied Biosystems instrument model.
Definition: cv.hpp:1933
UNIMOD_Guanidinyl
Guanidinyl: Guanidination.
Definition: cv.hpp:8548
MS_senior_author
senior author: The last of a set of authors associated with a publication or release. There may be more than one senior author in cases where several authors share senior attribution.
Definition: cv.hpp:6391
MS_heavy_labeled_peptide
heavy labeled peptide: A peptide that has been created or labelled with some heavier-than-usual isoto...
Definition: cv.hpp:3223
MS_single_peak_list_nativeID_format__combined_spectra
single peak list nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition: cv.hpp:8263
MS_retention_time_window_width
retention time window width: The full width of a retention time window for a chromatographic peak...
Definition: cv.hpp:5977
MS_H_PINS_retention_time_normalization_standard
H-PINS retention time normalization standard: The de facto standard providing the retention times at ...
Definition: cv.hpp:3259
MS_continuous_mass_spectrum
continuous mass spectrum (profile spectrum): A profile mass spectrum is created when data is recorded...
Definition: cv.hpp:568
MS_nth_generation_product_ion_OBSOLETE
nth generation product ion: Serial product ions from dissociation of selected precursor ions where n ...
Definition: cv.hpp:1429
UNIMOD_Lys_loss
Lys-loss: Loss of C-terminal K from Heavy Chain of MAb.
Definition: cv.hpp:8983
std::string id
the short label to be used as a reference tag with which to refer to this particular Controlled Vocab...
Definition: cv.hpp:13356
UNIMOD_Biotin
Biotin: Biotinylation.
Definition: cv.hpp:8428
UNIMOD_Met__Hpg
Met->Hpg: Methionine replacement by homopropargylglycine.
Definition: cv.hpp:10138
MS_modification_probability
modification probability: The a priori probability of a modification.
Definition: cv.hpp:5884
MS_ProteomeDiscoverer_Mascot_X_Static_Modification
ProteomeDiscoverer:Mascot:X Static Modification: Number of attempts to submit the Mascot search...
Definition: cv.hpp:5209
UNIMOD_NQIGG
NQIGG: SUMOylation by Giardia lamblia.
Definition: cv.hpp:12475
MS_MassHunter_BioConfirm
MassHunter BioConfirm: Software for protein characterization.
Definition: cv.hpp:2566
UO_plaque_forming_unit_per_milliliter
plaque forming unit per milliliter: A concentration unit which a measure of plague forming units in o...
Definition: cv.hpp:13135
MS_DeBunker_score
DeBunker:score: Score specific to DeBunker.
Definition: cv.hpp:6187
MS_solariX
solariX: Bruker Daltonics&#39; solariX: ESI, MALDI, Qh-FT_ICR.
Definition: cv.hpp:4894
UO_dynamic_range_unit
dynamic range unit: An image resolution unit which is a standard measure of the amount of contrast av...
Definition: cv.hpp:13204
UNIMOD_Puromycin
Puromycin: Puromycin.
Definition: cv.hpp:10288
UNIMOD_Glycerophospho
Glycerophospho: Glycerophospho.
Definition: cv.hpp:9220
MS_SEQUEST_DescriptionLines
SEQUEST:DescriptionLines: Number of full protein descriptions to show for top N peptides.
Definition: cv.hpp:3373
MS_free_electron_laser
free electron laser: Free electron laser uses a relativistic electron beam as the lasing medium which...
Definition: cv.hpp:3103
MS_tolerance_on_types_OBSOLETE
tolerance on types: OBSOLETE: Tolerance on types.
Definition: cv.hpp:3502
MS_coated_glass_plate
coated glass plate: Coated glass plate.
Definition: cv.hpp:6082
MS_odd_electron_rule_OBSOLETE
odd-electron rule: Odd-electron ions may dissociate to form either odd or even-electron ions...
Definition: cv.hpp:937
MS_ITRAQAnalyzer
ITRAQAnalyzer: Software for iTRAQ workflow. Extracts and normalizes iTRAQ information from an MS expe...
Definition: cv.hpp:6676
MS_GCT_Premier
GCT Premier: Waters oa-ToF based GCT Premier.
Definition: cv.hpp:5566
UNIMOD_Gln__Pro
Gln->Pro: Gln->Pro substitution.
Definition: cv.hpp:9700
MS_peptide_labeling_state
peptide labeling state: A state description of how a peptide might be isotopically or isobarically la...
Definition: cv.hpp:3220
MS_ProfileAnalysis
ProfileAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2701
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_2_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2): DHex Hex(5) HexA HexNAc(3) Sulf(2).
Definition: cv.hpp:11761
MS_param__z_1_ion
param: z+1 ion: Parameter information, type of product: z+1 ion.
Definition: cv.hpp:4465
UNIMOD_Biotin_Thermo_21901_2H2O
Biotin:Thermo-21901+2H2O: Maleimide-Biotin + 2Water.
Definition: cv.hpp:11212
MS_ion_kinetic_energy_spectrometry_OBSOLETE
ion kinetic energy spectrometry: A method of analysis in which a beam of ions is separated according ...
Definition: cv.hpp:1102
UNIMOD_Label_13C_4_15N_1_
Label:13C(4)15N(1): 13C4 15N1 label for SILAC.
Definition: cv.hpp:11167
UO_disintegrations_per_second
disintegrations per second: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:13138
MS_ProteomeDiscoverer_Mascot_Decoy_Search_OBSOLETE
ProteomeDiscoverer:Mascot:Decoy Search: Determines whether the Proteome Discoverer application search...
Definition: cv.hpp:5194
MS_Cleavage_agent_regular_expression
Cleavage agent regular expression: Regular expressions for cleavage enzymes.
Definition: cv.hpp:3844
UNIMOD_Hex_1_HexNAc_1_Kdn_1_Sulf_1_
Hex(1)HexNAc(1)Kdn(1)Sulf(1): Hex HexNAc Kdn Sulf.
Definition: cv.hpp:11845
MS_isobaric_label_quantitation_analysis
isobaric label quantitation analysis: Quantitation analysis using an isobaric labelling workflow...
Definition: cv.hpp:6310
MS_LCQ_Classic
LCQ Classic: ThermoFinnigan LCQ Classic MS.
Definition: cv.hpp:712
MS_frag__z_2_ion
frag: z+2 ion: Fragmentation information, type of product: z+2 ion.
Definition: cv.hpp:4354
MS_high_field_asymmetric_waveform_ion_mobility_spectrometry_OBSOLETE
high-field asymmetric waveform ion mobility spectrometry: The separation of ions between two concentr...
Definition: cv.hpp:1078
MS_SEQUEST_PeptideSp
SEQUEST:PeptideSp: The SEQUEST result &#39;Sp&#39; in out file (peptide).
Definition: cv.hpp:3922
MS_mass_to_charge_ratio
mass-to-charge ratio (m/z): Three-character symbol m/z is used to denote the quantity formed by divid...
Definition: cv.hpp:226
MS_D_Score_threshold
D-Score threshold: Threshold for D-score PTM site location score.
Definition: cv.hpp:7966
MS_Element_GD
Element GD: Thermo Scientific Element GD Glow Discharge MS.
Definition: cv.hpp:2461
UNIMOD_Propionamide_2H_3_
Propionamide:2H(3): Acrylamide d3.
Definition: cv.hpp:8611
UNIMOD_dHex_1_Hex_1_HexNAc_3_
dHex(1)Hex(1)HexNAc(3): DHex Hex HexNAc(3).
Definition: cv.hpp:11950
MS_two_dimensional_liquid_chromatography_with_fixed_modulation_time
two-dimensional liquid chromatography with fixed modulation time: Two-dimensional liquid chromatograp...
Definition: cv.hpp:6553
MS_NG_5400
NG-5400: Waters NG-5400 MS.
Definition: cv.hpp:748
MS_liquid_chromatography_separation
liquid chromatography separation: Liquid chromatography (LC) is a separation technique in which the m...
Definition: cv.hpp:7102
UNIMOD_mTRAQ_13C_6_15N_2_
mTRAQ:13C(6)15N(2): MTRAQ heavy.
Definition: cv.hpp:11179
MS_product_ion_drift_time_OBSOLETE
product ion drift time: The ion drift time of an MS2 product ion.
Definition: cv.hpp:6166
MS_CRM_OBSOLETE
CRM (consecutive reaction monitoring): MSn experiment with three or more stages of m/z separation and...
Definition: cv.hpp:1009
UNIMOD_Biotin_phenacyl
Biotin-phenacyl: Alkylation by biotinylated form of phenacyl bromide.
Definition: cv.hpp:9997
MS_ProteomeDiscoverer_SEQUEST_Fragment_Ion_Cutoff_Percentage
ProteomeDiscoverer:SEQUEST:Fragment Ion Cutoff Percentage: Percentage of the theoretical ions that mu...
Definition: cv.hpp:5269
MS_Bruker_Daltonics_EVOQ_series
Bruker Daltonics EVOQ series: Bruker Daltonics&#39; EVOQ series.
Definition: cv.hpp:7174
MS_wavelength_array
wavelength array: A data array of electromagnetic radiation wavelength values.
Definition: cv.hpp:2362
MS_deisotoping
deisotoping: The removal of isotope peaks to represent the fragment ion as one data point and is comm...
Definition: cv.hpp:202
UO_mass_density_unit
mass density unit: A density unit which is a standard measure of the mass of a substance in a given v...
Definition: cv.hpp:12652
MS_leading_protein
leading protein: At least one protein within each group should be annotated as a leading protein to i...
Definition: cv.hpp:7495
UNIMOD_dHex_3_Hex_4_HexNAc_4_
dHex(3)Hex(4)HexNAc(4): DHex(3) Hex(4) HexNAc(4).
Definition: cv.hpp:12457
MS_Scaffold__Minimum_Peptide_Probability
Scaffold: Minimum Peptide Probability: Minimum probability a peptide must have to be accepted for pro...
Definition: cv.hpp:4972
MS_TIC
TIC (total ion current): The sum of all the separate ion currents carried by the ions of different m/...
Definition: cv.hpp:1258
UNIMOD_Lys__Tyr
Lys->Tyr: Lys->Tyr substitution.
Definition: cv.hpp:10735
UNIMOD_Ala__Glu
Ala->Glu: Ala->Glu substitution.
Definition: cv.hpp:9469
MS_electromagnetic_radiation_chromatogram
electromagnetic radiation chromatogram: The measurement of electromagnetic properties as a function o...
Definition: cv.hpp:2977
MS_selected_reaction_monitoring_chromatogram
selected reaction monitoring chromatogram: Chromatogram created by creating an array of the measureme...
Definition: cv.hpp:4660
UNIMOD_DiART6plex
DiART6plex: Representative mass and accurate mass for 114.
Definition: cv.hpp:11347
MS_TOPP_IDPosteriorErrorProbability
TOPP IDPosteriorErrorProbability: Estimates posterior error probabilities using a mixture model...
Definition: cv.hpp:6865
UNIMOD_Hex_4_HexNAc_3_NeuGc_1_
Hex(4)HexNAc(3)NeuGc(1): Hex(4) HexNAc(3) NeuGc.
Definition: cv.hpp:11593
UNIMOD_Ala__Tyr
Ala->Tyr: Ala->Tyr substitution.
Definition: cv.hpp:10477
MS_chromatogram
chromatogram: The representation of detector response versus time.
Definition: cv.hpp:2392
MS_MRMaid
MRMaid: A web-based SRM assay design tool whose transitions are generated by mining the millions of i...
Definition: cv.hpp:6949
MS_SEQUEST_deltacn
SEQUEST:deltacn: The SEQUEST result &#39;DeltaCn&#39;.
Definition: cv.hpp:3775
MS_param__z_ion
param: z ion: Parameter information, type of product: z ion with charge on the C-terminal side...
Definition: cv.hpp:4063
MS_m_z_difference
m/z difference (delta m/z): The difference between a theoretically calculated m/z and the correspondi...
Definition: cv.hpp:6193
UNIMOD_Val__Pro
Val->Pro: Val->Pro substitution.
Definition: cv.hpp:10963
MS_collision_energy_ramp_end
collision energy ramp end: Collision energy at the end of the collision energy ramp.
Definition: cv.hpp:6328
UNIMOD_probiotinhydrazide
probiotinhydrazide: Oxidized proline biotinylated with biotin hydrazide.
Definition: cv.hpp:9067
UNIMOD_Diphthamide
Diphthamide: Diphthamide.
Definition: cv.hpp:9109
UNIMOD_GluGluGlu
GluGluGlu: Triglutamyl.
Definition: cv.hpp:9307
MS_ProteomeDiscoverer_Xtract_Monoisotopic_Mass_Only
ProteomeDiscoverer:Xtract:Monoisotopic Mass Only: Determines whether the isotopic pattern...
Definition: cv.hpp:5167
MS_Paragon_confidence
Paragon:confidence: The Paragon result &#39;Confidence&#39;.
Definition: cv.hpp:3808
UNIMOD_DHP
DHP: Dehydropyrrolizidine alkaloid (dehydroretronecine) on cysteines.
Definition: cv.hpp:9343
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_2_
dHex(1)Hex(1)HexNAc(2)NeuAc(2): DHex Hex HexNAc(2) NeuAc(2).
Definition: cv.hpp:12148
UNIMOD_Lysbiotinhydrazide
Lysbiotinhydrazide: Oxidized Lysine biotinylated with biotin hydrazide.
Definition: cv.hpp:9061
MS_cross_linking_score
cross-linking score: Cross-linking scoring value.
Definition: cv.hpp:7828
UNIMOD_dHex_3_Hex_2_HexNAc_2_Kdn_1_
dHex(3)Hex(2)HexNAc(2)Kdn(1): DHex(3) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:12214
UNIMOD_Arg__Tyr
Arg->Tyr: Arg->Tyr substitution.
Definition: cv.hpp:10894
MS_QuantAnalysis
QuantAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2725
MS_Bioworks
Bioworks: Thermo Finnigan software for data analysis of peptides and proteins.
Definition: cv.hpp:2053
MS_MZmine
MZmine: A framework for differential analysis of mass spectrometry data.
Definition: cv.hpp:7318
MS_m_z_calibration
m/z calibration: Calibration of data point m/z positions.
Definition: cv.hpp:4702
UNIMOD_FAD
FAD: Flavin adenine dinucleotide.
Definition: cv.hpp:8542
MS_ProteomeDiscoverer_Xtract_Resolution_At_400
ProteomeDiscoverer:Xtract:Resolution At 400: Resolution at mass 400.
Definition: cv.hpp:5176
UO_mass_volume_percentage
mass volume percentage: A dimensionless concentration unit which denotes the mass of the substance in...
Definition: cv.hpp:12982
MS_thresholding
thresholding (low intensity data point removal): The removal of very low intensity data points that a...
Definition: cv.hpp:2284
UO_plane_angle_unit
plane angle unit: A unit which is a standard measure of the angle formed by two straight lines in the...
Definition: cv.hpp:12862
MS_solid_sample_state
solid sample state: State if the sample is in solid form.
Definition: cv.hpp:265
MS_ProteomeDiscoverer_max_number_neutral_loss
ProteomeDiscoverer:max number neutral loss: Maximum number of same neutral losses.
Definition: cv.hpp:7264
MS_ProteoSuite
ProteoSuite: ProteoSuite software for the analysis of quantitative proteomics data.
Definition: cv.hpp:6661
MS_charge_state
charge state: The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:235
UNIMOD_HexNAc_2_dHex_1_
HexNAc(2)dHex(1): HexNAc2dHex1.
Definition: cv.hpp:8716
MS_CompassXport
CompassXport: Bruker stand-alone software for data conversion.
Definition: cv.hpp:2668
MS_Continuum_Mass_Spectrum
Continuum Mass Spectrum (profile spectrum): A profile mass spectrum is created when data is recorded ...
Definition: cv.hpp:571
MS_SEQUEST_sort_by_Sequence
SEQUEST:sort by Sequence: Sort order of SEQUEST search results given by the sequence.
Definition: cv.hpp:3535
UO_millimolal
millimolal: A molality unit which is equal to one thousandth of a molal or 10^[-3] m...
Definition: cv.hpp:12703
MS_delta_m_z
delta m/z: The difference between a theoretically calculated m/z and the corresponding experimentally...
Definition: cv.hpp:6190
MS_Phenyx_Turbo
Phenyx:Turbo: The turbo mode parameter in Phenyx.
Definition: cv.hpp:4387
UNIMOD_dHex_2_Hex_2_HexNAc_2_
dHex(2)Hex(2)HexNAc(2): DHex(2) Hex(2) HexNAc(2).
Definition: cv.hpp:12388
UNIMOD_AMTzHexNAc2
AMTzHexNAc2: Photocleavable Biotin + GalNAz on O-GlcNAc.
Definition: cv.hpp:10198
MS_MS_Numpress_short_logged_float_compression
MS-Numpress short logged float compression: Compression using MS-Numpress short logged float compress...
Definition: cv.hpp:7234
MS_normalization_to_mean_of_sum_of_all_proteins
normalization to mean of sum of all proteins: Normalization of protein values to the mean of the sum ...
Definition: cv.hpp:5842
MS_Paragon_score
Paragon:score: The Paragon result &#39;Score&#39;.
Definition: cv.hpp:3805
MS_____BD__
(?=[BD]): Regular expression for Asp-N.
Definition: cv.hpp:4087
UO_liter
liter: A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:12793
MS_SRM_peptide_level_quantitation
SRM peptide level quantitation: Selected Reaction Monitoring peptide level quantitation.
Definition: cv.hpp:7135
MS_SEQUEST_Chromatogram
SEQUEST:Chromatogram:
Definition: cv.hpp:3613
UNIMOD_Hex_3_HexNAc_4_Sulf_1_
Hex(3)HexNAc(4)Sulf(1): Hex(3) HexNAc(4) Sulf.
Definition: cv.hpp:11536
UNIMOD_PhosphoHex
PhosphoHex: Phosphoglycosyl-D-mannose-1-phosphoryl.
Definition: cv.hpp:9247
MS_SCIEX_TOF_TOF_Series_Explorer_Software
SCIEX TOF/TOF Series Explorer Software: SCIEX or Applied Biosystems software for TOF/TOF data acquisi...
Definition: cv.hpp:4696
MS_ProteomeDiscoverer_1__Static_Modification_OBSOLETE
ProteomeDiscoverer:1. Static Modification: ProteomeDiscoverer&#39;s 1st static post-translational modific...
Definition: cv.hpp:6526
UNIMOD_Methylphosphonate
Methylphosphonate: Methylphosphonylation.
Definition: cv.hpp:9907
MS_HiRes_MALDI
HiRes MALDI: IonSpec HiResMALDI MS.
Definition: cv.hpp:697
MS_Paragon_unused_protscore
Paragon:unused protscore: The Paragon result &#39;Unused ProtScore&#39;.
Definition: cv.hpp:3799
UNIMOD_Gly__Asp
Gly->Asp: Gly->Asp substitution.
Definition: cv.hpp:9562
MS_pyrolysis_mass_spectrometry
pyrolysis mass spectrometry: A mass spectrometry technique in which the sample is heated to the point...
Definition: cv.hpp:1189
UNIMOD_Val__Phe
Val->Phe: Val->Phe substitution.
Definition: cv.hpp:9808
MS_OpenXQuest_intsum
OpenXQuest:intsum: OpenXQuest&#39;s sum of matched peak intensity subscore.
Definition: cv.hpp:8356
MS_scan_number_s__OBSOLETE
scan number(s): OBSOLETE: use spectrumID attribute of SpectrumIdentificationResult. Take from mzData.
Definition: cv.hpp:3652
UNIMOD_Thiazolidine
Thiazolidine: Addition of Carbon to cysteine.
Definition: cv.hpp:10366
MS_param__a_ion_NH3_DEPRECATED
param: a ion-NH3 DEPRECATED: Ion a-NH3 parameter information, type of product: a ion with lost ammoni...
Definition: cv.hpp:3745
UO_hour
hour: A time unit which is equal to 3600 seconds or 60 minutes.
Definition: cv.hpp:12592
MS_instrument
instrument: Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1831
UNIMOD_Arg_loss
Arg-loss: Loss of arginine due to transpeptidation.
Definition: cv.hpp:11140
MS_ICAT_light_reagent
ICAT light reagent: The name of the sample labelled with the light ICAT label.
Definition: cv.hpp:8110
MS_percent_collision_energy_ramp_end
percent collision energy ramp end: Collision energy at the end of the collision energy ramp in percen...
Definition: cv.hpp:6946
UNIMOD_Hex_1_HexNAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuGc(1): Hex HexNAc NeuGc.
Definition: cv.hpp:11833
MS_membrane_inlet
membrane inlet: A semi-permeable membrane separator that permits the passage of gas sample directly t...
Definition: cv.hpp:1606
UO_microsievert
microsievert: A dose equivalent unit which is equal to one millionth of a sievert or 10^[-6] Sv...
Definition: cv.hpp:12910
MS_de_facto_standard
de facto standard: A practice or product that has become a standard not because it has been approved ...
Definition: cv.hpp:3250
UO_pixels_per_millimeter
pixels per millimeter: A spatial resolution unit which is a standard measure of the number of pixels ...
Definition: cv.hpp:13219
MS_xi
xi: Search engine for cross-linked peptides.
Definition: cv.hpp:7927
MS_PAnalyzer
PAnalyzer: PAnalyzer software for getting protein evidence categories.
Definition: cv.hpp:6520
MS_mzidLib_Omssa2Mzid
mzidLib:Omssa2Mzid: A converter for OMSSA OMX to mzIdentML.
Definition: cv.hpp:7003
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge3: Standard high confidence XCorr paramete...
Definition: cv.hpp:5374
UNIMOD_Retinylidene
Retinylidene: Retinal.
Definition: cv.hpp:9124
UNIMOD_Xle__Ala
Xle->Ala: Leu/Ile->Ala substitution.
Definition: cv.hpp:10687
UNIMOD_Cation_Ca_II_
Cation:Ca[II]: Replacement of 2 protons by calcium.
Definition: cv.hpp:10246
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_1_
dHex(2)Hex(3)HexNAc(3)Pent(1): DHex(2) Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:11569
MS_cross_linking_attribute
cross-linking attribute: Cross-linking attribute.
Definition: cv.hpp:7816
UO_microgray
microgray: An absorbed dose unit which is equal to one millionth of a gray or 10^[-6] Gy...
Definition: cv.hpp:12916
MS_decoy_DB_from_IPI_arabidopsis_OBSOLETE
decoy DB from IPI_arabidopsis: Decoy database from a International Protein Index database for Arabido...
Definition: cv.hpp:4132
MS_label_free_protein_level_quantitation
label-free protein level quantitation: Label-free protein level quantitation.
Definition: cv.hpp:6349
UNIMOD_Hex_6_HexNAc_5_
Hex(6)HexNAc(5): Hex(6) HexNAc(5).
Definition: cv.hpp:11821
UNIMOD_Dehydro
Dehydro: Half of a disulfide bridge.
Definition: cv.hpp:9106
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_1_
dHex(1)Hex(2)HexNAc(4)NeuAc(1): DHex Hex(2) HexNAc(4) NeuAc.
Definition: cv.hpp:12295
MS_intensity_of_precursor_ion
intensity of precursor ion: The intensity of the precursor ion.
Definition: cv.hpp:3730
MS_decoy_DB_from_IPI_cow_OBSOLETE
decoy DB from IPI_cow: Decoy database from a International Protein Index database for Bos taurus...
Definition: cv.hpp:4147
MS_mass_spectrometer_file_format
mass spectrometer file format: The format of the file being used. This could be a instrument or vendo...
Definition: cv.hpp:2137
UNIMOD_cysTMT6plex
cysTMT6plex: Cysteine-reactive Sixplex Tandem Mass Tag®.
Definition: cv.hpp:10309
MS_Phenyx_Peptides1
Phenyx:Peptides1: First number of phenyx result "#Peptides".
Definition: cv.hpp:4423
UNIMOD_LRGG
LRGG: Ubiquitination.
Definition: cv.hpp:9439
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_Sulf_1_
Hex(3)HexNAc(3)NeuAc(2)Sulf(1): Hex(3) HexNAc(3) NeuAc(2) Sulf.
Definition: cv.hpp:12343
MS_peak_list_scans
peak list scans: A list of scan numbers and or scan ranges associated with a peak list...
Definition: cv.hpp:2926
UO_microsecond
microsecond: A time unit which is equal to one millionth of a second or 10^[-6] s.
Definition: cv.hpp:12583
UNIMOD_dHex_1_HexNAc_5_
dHex(1)HexNAc(5): DHex HexNAc(5).
Definition: cv.hpp:12079
UNIMOD_iodoTMT
iodoTMT: Native iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:11245
MS_autoflex
autoflex: Bruker Daltonics&#39; autoflex: MALDI TOF.
Definition: cv.hpp:4906
MS_DB_PI_filter_maximum
DB PI filter maximum: Maximum value of isoelectric point filter.
Definition: cv.hpp:3892
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexA HexNAc(2) Sulf.
Definition: cv.hpp:12133
MS_ProteomeDiscoverer_SEQUEST_Weight_of_w_Ions
ProteomeDiscoverer:SEQUEST:Weight of w Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5335
MS_InternalCalibration
InternalCalibration: Applies an internal calibration.
Definition: cv.hpp:2794
MS_light_labeled_sample
light labeled sample (unlabeled sample): A sample that has not been labelled or modified. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:6403
MS_dissociative_ionization
dissociative ionization: The reaction of a gas-phase molecule that results in its decomposition to fo...
Definition: cv.hpp:1585
MS_ProteinExtractor_ProteinSolverPeptideScoreThreshold
ProteinExtractor:ProteinSolverPeptideScoreThreshold: Only peptides with scores higher than that thres...
Definition: cv.hpp:4561
MS_quantitation_software_version_OBSOLETE
quantitation software version: Quantitation software version.
Definition: cv.hpp:3727
MS_Bruker_U2_format
Bruker U2 format: Bruker HyStar U2 file format.
Definition: cv.hpp:2995
MS_Quistor
Quistor (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensi...
Definition: cv.hpp:394
MS_BioTOF_Q
BioTOF-Q: Bruker Daltonics&#39; BioTOF-Q: ESI Q-TOF.
Definition: cv.hpp:664
MS_inductively_coupled_plasma
inductively coupled plasma: A gas discharge ion source in which the energy to the plasma is supplied ...
Definition: cv.hpp:295
MS_field_ionization
field ionization: The removal of electrons from any species by interaction with a high electric field...
Definition: cv.hpp:1090
UNIMOD_Hex_5_
Hex(5): Hex(5).
Definition: cv.hpp:11905
MS_number_of_precursor_ion_observations
number of precursor ion observations: The number of times the specific precursor ion has been observe...
Definition: cv.hpp:6973
UNIMOD_CyDye_Cy5
CyDye-Cy5: Cy5 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:9355
MS_TraML_format
TraML format: The TraML format for transitions in SRM from the PSI. File extension &#39;...
Definition: cv.hpp:7525
MS_EVOQ_Elite
EVOQ Elite: Bruker Daltonics&#39; EVOQ Elite: LC-triple quadrupole.
Definition: cv.hpp:7183
MS_LC_MS_feature_intensity
LC-MS feature intensity: Maximum peak intensity of the LC-MS feature.
Definition: cv.hpp:5776
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(4) NeuAc Sulf.
Definition: cv.hpp:11812
MS_MSn_spectrum
MSn spectrum: MSn refers to multi-stage MS2 experiments designed to record product ion spectra where ...
Definition: cv.hpp:2212
MS_mass_chromatogram
mass chromatogram: A plot of the relative abundance of a beam or other collection of ions as a functi...
Definition: cv.hpp:2974
MS_TOPP_OpenSwathRTNormalizer
TOPP OpenSwathRTNormalizer: Generates a transformation file for retention time space into normalized ...
Definition: cv.hpp:6895
MS_ProteomeDiscoverer_Target_FDR_Strict
ProteomeDiscoverer:Target FDR Strict: Specifies the strict target false discovery rate (FDR...
Definition: cv.hpp:5248
MS_SCIEX_TOF_TOF_nativeID_format
SCIEX TOF/TOF nativeID format: Native format defined by jobRun=xsd:nonNegativeInteger spotLabel=xsd:s...
Definition: cv.hpp:4687
UNIMOD_Hex_1_HexA_1_HexNAc_2_
Hex(1)HexA(1)HexNAc(2): Hex HexA HexNAc(2).
Definition: cv.hpp:11869
MS_domain_range
domain range: Domain range of a numerical value.
Definition: cv.hpp:7204
MS_coefficient_of_variation
coefficient of variation: Variation of a set of signal measurements calculated as the standard deviat...
Definition: cv.hpp:5905
UNIMOD_Cys__Xle
Cys->Xle: Cys->Leu/Ile substitution.
Definition: cv.hpp:10492
UNIMOD_Tyr__Asp
Tyr->Asp: Tyr->Asp substitution.
Definition: cv.hpp:9856
UNIMOD_dHex_1_Hex_2_HexNAc_1_
dHex(1)Hex(2)HexNAc(1): DHex Hex(2) HexNAc.
Definition: cv.hpp:11836
MS_Asp_N
Asp-N: Endoproteinase Asp-N.
Definition: cv.hpp:4165
UNIMOD_Trioxidation
Trioxidation: Cysteine oxidation to cysteic acid.
Definition: cv.hpp:9043
PWIZ_API_DECL const CVTermInfo & cvTermInfo(CVID cvid)
returns CV term info for the specified CVID
MS_QSTAR_XL
QSTAR XL: Applied Biosystems|MDS SCIEX QSTAR XL.
Definition: cv.hpp:2491
UNIMOD_Phosphogluconoylation
Phosphogluconoylation: Phosphogluconoylation.
Definition: cv.hpp:11251
UNIMOD_Xlink_DST
Xlink:DST: Monolink of DST crosslinker to Lys or N-terminus.
Definition: cv.hpp:10396
MS_MzStar
MzStar: A software program for converting Applied Biosystems wiff file format to mzXML format...
Definition: cv.hpp:2083
UNIMOD_Hex_2_HexNAc_3_NeuGc_2_
Hex(2)HexNAc(3)NeuGc(2): Hex(2) HexNAc(3) NeuGc(2).
Definition: cv.hpp:12289
UNIMOD_GG
GG: Ubiquitinylation residue.
Definition: cv.hpp:8650
MS_frag__a_ion___NH3
frag: a ion - NH3: Ion a-NH3 fragmentation information, type of product: a ion without ammonia...
Definition: cv.hpp:3985
MS_average_mass_OBSOLETE
average mass: The mass of an ion or molecule calculated using the average mass of each element weight...
Definition: cv.hpp:841
UNIMOD_Ser__Gly
Ser->Gly: Ser->Gly substitution.
Definition: cv.hpp:9781
MS_selected_reaction_monitoring
selected reaction monitoring: Data acquired from specific product ions corresponding to m/z selected ...
Definition: cv.hpp:832
MS_PASSEL_transition_group_browser_URI
PASSEL transition group browser URI: URI to retrieve transition group data for a PASSEL (PeptideAtlas...
Definition: cv.hpp:6379
UNIMOD_dHex_2_Hex_3_HexNAc_3_Pent_2_
dHex(2)Hex(3)HexNAc(3)Pent(2): DHex(2) Hex(3) HexNAc(3) Pent(2).
Definition: cv.hpp:11626
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12121
MS_chemical_compound_formula
chemical compound formula: A combination of symbols used to express the chemical composition of a com...
Definition: cv.hpp:3142
MS_SEQUEST_InfoAndLog
SEQUEST:InfoAndLog:
Definition: cv.hpp:3616
MS_reflectron
reflectron: A time-of-flight mass spectrometer that uses a static electric field to reverse the direc...
Definition: cv.hpp:1309
MS_API_165
API 165: Applied Biosystems/MDS SCIEX API 165 MS.
Definition: cv.hpp:8056
UNIMOD_Hex_9_HexNAc_2_
Hex(9)HexNAc(2): Hex(9) HexNAc(2).
Definition: cv.hpp:11737
UNIMOD_glycidamide
glycidamide: Glycidamide adduct.
Definition: cv.hpp:10375
MS_sequence_multiply_subsumable_protein
sequence multiply subsumable protein: A protein for which the matched peptide sequences are the same...
Definition: cv.hpp:8005
MS_superelastic_collision_OBSOLETE
superelastic collision: Collision in which the translational energy of the fast-moving collision part...
Definition: cv.hpp:1744
MS_Compass
Compass: Bruker Compass software.
Definition: cv.hpp:2653
MS_Element_XR
Element XR: Thermo Scientific Element XR HR-ICP-MS.
Definition: cv.hpp:2455
MS_Thermo_Electron_instrument_model
Thermo Electron instrument model: Thermo Electron Corporation instrument model.
Definition: cv.hpp:1924
MS_apex_ultra
apex ultra: Bruker Daltonics&#39; apex ultra: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:2602
UNIMOD_Ser__Trp
Ser->Trp: Ser->Trp substitution.
Definition: cv.hpp:9757
MS_Byonic_Delta_Score
Byonic:Delta Score: The drop in Byonic score from the top-scoring peptide to the next peptide with di...
Definition: cv.hpp:7078
MS_protein_ambiguity_group_result_details
protein ambiguity group result details:
Definition: cv.hpp:3748
MS_Phenyx_Conflict_Resolution
Phenyx:Conflict Resolution: The parameter in Phenyx that specifies if the conflict resolution algorit...
Definition: cv.hpp:4411
MS_number_of_spectra_searched
number of spectra searched: Number of spectra in a search.
Definition: cv.hpp:7594
UO_count_per_molar_second
count per molar second: A rate unit which is equal to one over one molar second.
Definition: cv.hpp:13336
UNIMOD_GluGlu
GluGlu: Diglutamyl.
Definition: cv.hpp:9304
MS_assay_label_attribute
assay label attribute: Attribute describing an assay label.
Definition: cv.hpp:6622
MS_SEQUEST_out_file_format
SEQUEST out file format: Source file for this mzIdentML was in SEQUEST out file format.
Definition: cv.hpp:3883
MS_membrane_separator
membrane separator: A device to separate carrier molecules from analyte molecules on the basis of eas...
Definition: cv.hpp:304
UNIMOD_His__Gly
His->Gly: His->Gly substitution.
Definition: cv.hpp:10666
MS_zoom_scan
zoom scan: Special scan mode, where data with improved resolution is acquired. This is typically achi...
Definition: cv.hpp:1942
MS_TOPP_HighResPrecursorMassCorrector
TOPP HighResPrecursorMassCorrector: Performs precursor mz correction on centroided high resolution da...
Definition: cv.hpp:6772
MS_sample_batch
sample batch: Sample batch lot identifier.
Definition: cv.hpp:274
UO_mole_fraction
mole fraction: A concentration unit which denotes the number of moles of solute as a proportion of th...
Definition: cv.hpp:12724
MS_mass_spectrometer_OBSOLETE
mass spectrometer: An instrument that measures the mass-to-charge ratio and relative abundances of io...
Definition: cv.hpp:1288
MS_ProteomeDiscoverer_Initial_minimal_peptide_probability
ProteomeDiscoverer:Initial minimal peptide probability: Minimal initial peptide probability to contri...
Definition: cv.hpp:5431
MS_ProteomeDiscoverer_SEQUEST_Maximum_Peptides_Considered
ProteomeDiscoverer:SEQUEST:Maximum Peptides Considered: Maximum number of peptides that are searched ...
Definition: cv.hpp:5278
MS_frag__c_ion
frag: c ion: Fragmentation information, type of product: c ion.
Definition: cv.hpp:3973
MS_ProteomeDiscoverer_SEQUEST_Use_Average_Fragment_Masses
ProteomeDiscoverer:SEQUEST:Use Average Fragment Masses: Use average masses for the fragments...
Definition: cv.hpp:5305
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_3_
Hex(4)HexNAc(4)NeuAc(1)Sulf(3): Hex(4) HexNAc(4) NeuAc Sulf(3).
Definition: cv.hpp:12385
UNIMOD_Ethanolamine
Ethanolamine: Carboxyl modification with ethanolamine.
Definition: cv.hpp:9919
UNIMOD_QAT_2H_3_
QAT:2H(3): APTA d3.
Definition: cv.hpp:8803
MS_area_peak_picking
area peak picking: Spectral peak processing conducted on the acquired data to convert profile data to...
Definition: cv.hpp:2938
UNIMOD_dHex_1_Hex_2_HexNAc_3_
dHex(1)Hex(2)HexNAc(3): DHex Hex(2) HexNAc(3).
Definition: cv.hpp:12394
MS_protein
protein: A compound composed of one or more chains of amino acids in a specific order determined by t...
Definition: cv.hpp:3196
MS_PQD
PQD (pulsed q dissociation): A process that involves precursor ion activation at high Q...
Definition: cv.hpp:2305
UNIMOD_Asn__Phe
Asn->Phe: Asn->Phe substitution.
Definition: cv.hpp:10786
UNIMOD_Methyl
Methyl: Methylation.
Definition: cv.hpp:8497
UNIMOD_NBS
NBS: Shimadzu NBS-12C.
Definition: cv.hpp:8770
UO_nanometer
nanometer: A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m...
Definition: cv.hpp:12550
UNIMOD_Menadione_HQ
Menadione-HQ: Menadione hydroquinone derivative.
Definition: cv.hpp:9982
UO_steradian
steradian: A solid angle unit which is equal to the solid angle subtended at the center of a sphere b...
Definition: cv.hpp:12871
MS_precursor_activation_attribute
precursor activation attribute: Precursor Activation Attribute.
Definition: cv.hpp:1984
MS_quadratic
quadratic: The mass scan is done in quadratic mode.
Definition: cv.hpp:442
UNIMOD_Hex_1_NeuGc_1_
Hex(1)NeuGc(1): Hex NeuGc.
Definition: cv.hpp:11440
MS_SEQUEST_ProcessAll
SEQUEST:ProcessAll:
Definition: cv.hpp:3592
MS_micrOTOF_Q_III
micrOTOF-Q III: Bruker Daltonics&#39; micrOTOF-Q III: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7189
MS_SRM_feature_level_quantitation
SRM feature level quantitation: Selected Reaction Monitoring feature level quantitation.
Definition: cv.hpp:7132
MS_Bruker_Daltonics_solarix_series
Bruker Daltonics solarix series: Bruker Daltonics&#39; solarix: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4891
UNIMOD_dHex_1_HexNAc_4_
dHex(1)HexNAc(4): DHex HexNAc(4).
Definition: cv.hpp:11971
MS_ProteomeDiscoverer_Residue_substitution_list
ProteomeDiscoverer:Residue substitution list: Residues considered equivalent when comparing peptides...
Definition: cv.hpp:5464
UNIMOD_Pyridylethyl
Pyridylethyl: S-pyridylethylation.
Definition: cv.hpp:8494
MS_spectral_count_peptide_level_quantitation
spectral count peptide level quantitation: Spectral count peptide level quantitation.
Definition: cv.hpp:6331
MS_peptide_consensus_attribute
peptide consensus attribute: Attribute describing a peptide consensus.
Definition: cv.hpp:6637
MS_SEQUEST_sort_by_XCorr
SEQUEST:sort by XCorr: Sort order of SEQUEST search results by the correlation score.
Definition: cv.hpp:3565
MS_mass_number_OBSOLETE
mass number: The sum of the protons and neutrons in an atom, molecule or ion.
Definition: cv.hpp:910
MS_peptide_H_Score
peptide:H-Score: H-Score for peptide phosphorylation site location at the peptide-level.
Definition: cv.hpp:7951
UNIMOD_CarbamidomethylDTT
CarbamidomethylDTT: Carbamidomethylated DTT modification of cysteine.
Definition: cv.hpp:10120
MS_FlexAnalysis
FlexAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2059
MS_normalized_retention_time
normalized retention time: A time interval from the start of chromatography when an analyte exits a s...
Definition: cv.hpp:3241
UNIMOD_Thr__Xle
Thr->Xle: Thr->Leu/Ile substitution.
Definition: cv.hpp:9802
MS_EMR_spectrum
EMR spectrum (electromagnetic radiation spectrum): A plot of the relative intensity of electromagneti...
Definition: cv.hpp:2956
UNIMOD_EHD_diphenylpentanone
EHD-diphenylpentanone: 2-ethyl-3-hydroxy-1,3-diphenylpentan-1-one.
Definition: cv.hpp:11209
MS_Phenyx_Pepzscore
Phenyx:Pepzscore: The z-score value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4435
MS_normalized_XIC_area
normalized XIC area: Normalized area of the extracted ion chromatogram (e.g. of a transition in SRM)...
Definition: cv.hpp:5833
MS_postprocessing_software
postprocessing software: Postprocessing software.
Definition: cv.hpp:7534
MS_TOPP_XTandemAdapter
TOPP XTandemAdapter: Identifies MS2 spectra using the external program XTandem.
Definition: cv.hpp:6847
MS_SQID
SQID: Software for data analysis of peptides and proteins.
Definition: cv.hpp:5914
MS_principal_ion_OBSOLETE
principal ion: Most abundant ion of an isotope cluster, such as the 11B79Br2 81Br+ ion of m/z 250 of ...
Definition: cv.hpp:1540
MS_spectrum_identification_statistical_threshold
spectrum identification statistical threshold: Estimated statistical threshold used for spectrum iden...
Definition: cv.hpp:8014
MS_constant_OBSOLETE
constant: When resolution is constant with respect to m/z.
Definition: cv.hpp:418
MS_Libra
Libra: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on N-cha...
Definition: cv.hpp:7165
MS_Finnigan_MAT_instrument_model
Finnigan MAT instrument model: Finnigan MAT instrument model.
Definition: cv.hpp:1927
UO_siemens
siemens: An electrical conduction unit which is equal to A/V.
Definition: cv.hpp:13282
MS_charge_inversion_reaction_OBSOLETE
charge inversion reaction: Reaction of an ion with a neutral species in which the charge on the produ...
Definition: cv.hpp:1663
MS_Hitachi_instrument_model
Hitachi instrument model: Hitachi instrument model.
Definition: cv.hpp:1912
UO_meter_per_second
meter per second: A speed/velocity unit which is equal to the speed of an object traveling 1 meter di...
Definition: cv.hpp:12778
UNIMOD_Hex_6_HexNAc_2_Phos_1_
Hex(6)HexNAc(2)Phos(1): Hex(6) HexNAc(2) Phos.
Definition: cv.hpp:11554
UNIMOD_FormylMet
FormylMet: Addition of N-formyl met.
Definition: cv.hpp:8620
MS_SRM
SRM (selected reaction monitoring): Data acquired from specific product ions corresponding to m/z sel...
Definition: cv.hpp:835
MS_Arg_C
Arg-C: Endoproteinase Arg-C.
Definition: cv.hpp:4159
UNIMOD_iTRAQ4plex
iTRAQ4plex: Representative mass and accurate mass for 116 & 117.
Definition: cv.hpp:8842
MS_DBExporter
DBExporter: Exports data from an OpenMS database to a file.
Definition: cv.hpp:2779
UO_Roentgen_equivalent_man
Roentgen equivalent man: A dose equivalent unit which when multiplied by hundred is equal to one siev...
Definition: cv.hpp:12913
MS_Accela_PDA
Accela PDA: Accela PDA.
Definition: cv.hpp:2383
MS_ProteomeDiscoverer_Mascot_Significance_Middle
ProteomeDiscoverer:Mascot:Significance Middle: Calculated relaxed significance when performing a deco...
Definition: cv.hpp:6976
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Quantitation_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Quantitation Method: Quantitation method for isobarically ...
Definition: cv.hpp:5356
MS_____M_
(?<=M): Regular expression for CNBr.
Definition: cv.hpp:4249
MS_charge_permutation_reaction_OBSOLETE
charge permutation reaction: The reaction of an ion with a neutral species with a resulting change in...
Definition: cv.hpp:1666
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO ...
MS_base_peak
base peak: The peak in a mass spectrum that has the greatest intensity. This term may be applied to t...
Definition: cv.hpp:850
MS_absorption_spectrum
absorption spectrum: A plot of the relative intensity of electromagnetic radiation absorbed by atoms ...
Definition: cv.hpp:2962
MS_SEQUEST_sortCV
SEQUEST:sortCV: SEQUEST View / Sort Input Parameters.
Definition: cv.hpp:3460
MS_DI
DI (desorption ionization): The formation of ions from a solid or liquid material after the rapid vap...
Definition: cv.hpp:1027
UO_pixels_per_inch
pixels per inch: A spatial resolution unit which is a standard measure of the resolution of a compute...
Definition: cv.hpp:13216
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:11788
MS_ELEMENT2_OBSOLETE
ELEMENT2: ThermoFinnigan ELEMENT2 MS.
Definition: cv.hpp:673
UNIMOD_Hex_2_HexNAc_1_
Hex(2)HexNAc(1): Hex(2) HexNAc.
Definition: cv.hpp:11458
MS_protein_group_level_identification_statistic
protein group-level identification statistic: Identification confidence metric for a protein group...
Definition: cv.hpp:7336
MS_common_software_input_parameter
common software input parameter: Software input parameter that is shared by more than one software...
Definition: cv.hpp:6601
MS_MD_Score
MD-Score: MD-Score for PTM site location at the PSM-level.
Definition: cv.hpp:7906
MS_co_eluting_ion
co-eluting ion: Co-eluting ion.
Definition: cv.hpp:4003
UO_megabyte
megabyte: An information unit which is equal to 1000 kB.
Definition: cv.hpp:13195
MS_ProteinLynx_XML_format
ProteinLynx XML format: Source file for this mzIdentML was in Waters ProteinLynx XML format...
Definition: cv.hpp:4939
MS_decoy_DB_accession_regexp
decoy DB accession regexp: Specify the regular expression for decoy accession numbers.
Definition: cv.hpp:4099
MS_point_collector
point collector: A detector in which the ion beam is focused onto a point and the individual ions arr...
Definition: cv.hpp:1471
MS_FFR
FFR (field-free region): A section of a mass spectrometer in which there are no electric or magnetic ...
Definition: cv.hpp:883
MS_total_ion_current_chromatogram
total ion current chromatogram: Chromatogram obtained by plotting the total ion current detected in e...
Definition: cv.hpp:955
MS_microflex_LT
microflex LT: Bruker Daltonics&#39; microflex LT: MALDI TOF.
Definition: cv.hpp:2620
UNIMOD_Hex_1_HexNAc_1_Sulf_1_
Hex(1)HexNAc(1)Sulf(1): Hex HexNAc Sulf.
Definition: cv.hpp:11434
MS_t_test_p_value
t-test p-value: P-value of t-Test of two groups.
Definition: cv.hpp:5821
MS_ProteomeDiscoverer_SEQUEST_Weight_of_v_Ions
ProteomeDiscoverer:SEQUEST:Weight of v Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5332
MS_AXIMA_CFR_MALDI_TOF
AXIMA CFR MALDI-TOF: Shimadzu Biotech AXIMA CFR MALDI-TOF MS.
Definition: cv.hpp:2329
UNIMOD_Thr__Ala
Thr->Ala: Thr->Ala substitution.
Definition: cv.hpp:9787
MS_matrix_assisted_laser_desorption_ionization
matrix-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are ...
Definition: cv.hpp:358
MS_ICAT_reagent
ICAT reagent: Isotope coded affinity tag reagent.
Definition: cv.hpp:8104
MS_wolf
wolf (massWolf): A software for converting Waters raw directory format to mzXML or mzML...
Definition: cv.hpp:2071
MS_Bruker_Agilent_YEP_nativeID_format
Bruker/Agilent YEP nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2833
UNIMOD_Cholesterol
Cholesterol: Cholesterol ester.
Definition: cv.hpp:9253
MS_no_combination
no combination: Use this term if only one scan was recorded or there is no information about scans av...
Definition: cv.hpp:2920
MS_Acquity_SQD
Acquity SQD: Waters quadrupole based Acquity SQD.
Definition: cv.hpp:5617
MS_SEQUEST_sort_by_Sf
SEQUEST:sort by Sf: Sort order of SEQUEST search results given by the SEQUEST result &#39;Sf&#39;...
Definition: cv.hpp:3538
MS_multiple_enzyme_combination_rules_OBSOLETE
multiple enzyme combination rules: OBSOLETE: use attribute independent in mzIdentML instead...
Definition: cv.hpp:3487
MS_MassHunter_Quantitative_Analysis
MassHunter Quantitative Analysis: Software for quantitation of Triple Quadrupole and Quadrupole Time-...
Definition: cv.hpp:2560
MS_mzidLib_ProteoGrouper
mzidLib:ProteoGrouper: A generic and parameterizable protein inference algorithm for mzIdentML files...
Definition: cv.hpp:7012
MS_contact_role
contact role: Role of the contact person.
Definition: cv.hpp:6385
MS_ProteomeDiscoverer_Minimal_peptide_weight
ProteomeDiscoverer:Minimal peptide weight: Minimum peptide weight contributing to protein probability...
Definition: cv.hpp:5437
MS_MassLynx
MassLynx: Micromass software for data acquisition and analysis.
Definition: cv.hpp:2056
MS_ProteoWizard_chainsaw
ProteoWizard chainsaw: Filters and processes protein sequence databases.
Definition: cv.hpp:6910
MS_ProteomeDiscoverer_4__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:4. Dynamic Modification: ProteomeDiscoverer&#39;s 4th dynamic post-translational modif...
Definition: cv.hpp:5425
MS_Isotopologue_ion_OBSOLETE
Isotopologue ion: An ion that differs only in the isotopic composition of one or more of its constitu...
Definition: cv.hpp:1519
UNIMOD_Cys__methylaminoAla
Cys->methylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of ...
Definition: cv.hpp:10213
MS_DELTAplusXP
DELTAplusXP: ThermoFinnigan DELTAplusXP MS.
Definition: cv.hpp:670
MS_dilution_series__concentration_X
dilution series, concentration X: The experimental design followed a dilution series design...
Definition: cv.hpp:5704
MS_local_retention_time
local retention time: A time interval from the start of chromatography when an analyte exits an unspe...
Definition: cv.hpp:3238
UNIMOD_Cys__Trp
Cys->Trp: Cys->Trp substitution.
Definition: cv.hpp:9481
UNIMOD_dHex_2_Hex_2_HexA_1_HexNAc_1_
dHex(2)Hex(2)HexA(1)HexNAc(1): DHex(2) Hex(2) HexA HexNAc.
Definition: cv.hpp:11986
MS_UIMF_format
UIMF format: SQLite-based file format created at Pacific Northwest National Lab. It stores an interme...
Definition: cv.hpp:7888
MS_peptide
peptide: A compound of low molecular weight that is composed of two or more amino acids...
Definition: cv.hpp:3124
MS_Byonic_Peptide_LogProb
Byonic:Peptide LogProb: The log p-value of the PSM. This is the log of the probability that the PSM w...
Definition: cv.hpp:7087
MS_plasma_desorption
plasma desorption: The ionization of material in a solid sample by bombarding it with ionic or neutra...
Definition: cv.hpp:598
MS_ProteomeDiscoverer_Default_FDR_calculator
ProteomeDiscoverer:Default FDR calculator: The default FDR calculator as globally unique identifier (...
Definition: cv.hpp:6985
MS_ProteomeDiscoverer_Number_of_input1_spectra
ProteomeDiscoverer:Number of input1 spectra: Number of spectra from 1+ precursor ions.
Definition: cv.hpp:5440
MS_ProteomeDiscoverer_Min_Precursor_Mass
ProteomeDiscoverer:Min Precursor Mass: Minimum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5080
MS_PeptideShaker_peptide_confidence_type
PeptideShaker peptide confidence type: PeptideShaker quality criteria for the confidence of peptide i...
Definition: cv.hpp:7918
MS_baseline_array
baseline array: A data array of signal baseline values (the signal in the absence of analytes)...
Definition: cv.hpp:7885
MS_dynode
dynode: One of a series of electrodes in a photomultiplier tube. Such an arrangement is able to ampli...
Definition: cv.hpp:1462
MS_internal_reference_abundance
internal reference abundance: The absolute abundance of the spiked in reference peptide or protein us...
Definition: cv.hpp:7843
UNIMOD_Hex_7_HexNAc_3_
Hex(7)HexNAc(3): Hex(7) HexNAc(3).
Definition: cv.hpp:11686
MS_TOPP_FalseDiscoveryRate
TOPP FalseDiscoveryRate: Estimates the false discovery rate on peptide and protein level using decoy ...
Definition: cv.hpp:6901
UO_foot_candle
foot candle: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread ...
Definition: cv.hpp:12949
UNIMOD_Hex_6_HexNAc_2_
Hex(6)HexNAc(2): Hex(6) HexNAc(2).
Definition: cv.hpp:11539
MS_API
API (atmospheric pressure ionization): Any ionization process in which ions are formed in the gas pha...
Definition: cv.hpp:985
MS_SRM_protein_level_quantitation
SRM protein level quantitation: Selected Reaction Monitoring protein level quantitation.
Definition: cv.hpp:7138
MS_modification_specificity_peptide_C_term
modification specificity peptide C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:3853
MS_product_ion_intensity
product ion intensity: The intensity of a single product ion.
Definition: cv.hpp:3955
UNIMOD_Lys__Gln
Lys->Gln: Lys->Gln substitution.
Definition: cv.hpp:9604
UNIMOD_Hydroxytrimethyl
Hydroxytrimethyl: 5-hydroxy-N6,N6,N6-trimethyl.
Definition: cv.hpp:9289
MS_Phenyx_Turbo_Series
Phenyx:Turbo:Series: The list of ion series considered in the turbo mode of Phenyx.
Definition: cv.hpp:4396
MS_ionization_efficiency_OBSOLETE
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:889
UNIMOD_Xle__Ser
Xle->Ser: Leu/Ile->Ser substitution.
Definition: cv.hpp:9616
MS_Phenyx
Phenyx: The name of the Phenyx search engine.
Definition: cv.hpp:3904
MS_SRM_transition_type
SRM transition type: The type of the transitions, e.g. target or decoy.
Definition: cv.hpp:6292
UNIMOD_DiART6plex115
DiART6plex115: Accurate mass for DiART6plex 115.
Definition: cv.hpp:11350
UO_area_density_unit
area density unit: A density unit which is a standard measure of the mass exerting an influence on a ...
Definition: cv.hpp:12658
MS_reflectron_state
reflectron state: Status of the reflectron, turned on or off.
Definition: cv.hpp:163
MS_mass_spectrum
mass spectrum: A plot of the relative abundance of a beam or other collection of ions as a function o...
Definition: cv.hpp:1291
UNIMOD_Hex_7_HexNAc_1_
Hex(7)HexNAc(1): Hex(7) HexNAc.
Definition: cv.hpp:11524
MS_protein_level_q_value
protein-level q-value: Estimation of the q-value for proteins.
Definition: cv.hpp:5863
UNIMOD_Biotin_Thermo_21325
Biotin:Thermo-21325: Was ChromoBiotin.
Definition: cv.hpp:10096
UNIMOD_Val__Trp
Val->Trp: Val->Trp substitution.
Definition: cv.hpp:10978
MS_Amanda
Amanda: Amanda scoring system for PSM identification.
Definition: cv.hpp:7300
MS_proton_affinity_OBSOLETE
proton affinity: The proton affinity of a species M is defined as the negative of the enthalpy change...
Definition: cv.hpp:946
UO_milliliter_per_kilogram
milliliter per kilogram: A specific volume unit which is equal to a thousandth of a liter per kilogra...
Definition: cv.hpp:13084
UNIMOD_His__Ser
His->Ser: His->Ser substitution.
Definition: cv.hpp:10675
MS_PROTEINEER_spII
PROTEINEER spII: Bruker PROTEINEER spII software.
Definition: cv.hpp:2713
UNIMOD_Gly__Arg
Gly->Arg: Gly->Arg substitution.
Definition: cv.hpp:9568
MS_biological_replicate
biological replicate: The study variable is &#39;biological replicate&#39;. This means, the run was generated...
Definition: cv.hpp:5683
MS_MaRiMba
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3166
UNIMOD_dHex_2_Hex_3_
dHex(2)Hex(3): DHex(2) Hex(3).
Definition: cv.hpp:11887
MS_height_peak_picking
height peak picking: Spectral peak processing conducted on the acquired data to convert profile data ...
Definition: cv.hpp:2944
MS_fast_evaporation_MALDI_sample_preparation
fast evaporation MALDI sample preparation: Fast-evaporation MALDI sample preparation method...
Definition: cv.hpp:6238
UNIMOD_Lys__Pro
Lys->Pro: Lys->Pro substitution.
Definition: cv.hpp:10723
MS_contact_attribute
contact attribute: Details about a person or organization to contact in case of concern or discussion...
Definition: cv.hpp:2254
MS_MaxQuant_peptide_counts__razor_unique_
MaxQuant:peptide counts (razor+unique): The data type peptide counts (razor+unique) produced by MaxQu...
Definition: cv.hpp:5953
UNIMOD_Delta_H_6_C_6_O_1_
Delta:H(6)C(6)O(1): Acrolein addition +94.
Definition: cv.hpp:8818
MS_proteogenomics_attribute
proteogenomics attribute: Proteogenomics attribute.
Definition: cv.hpp:8206
UNIMOD_DiART6plex116_119
DiART6plex116/119: Accurate mass for DiART6plex 116 and 119.
Definition: cv.hpp:11353
MS_molecular_mass_OBSOLETE
molecular mass: The mass of one mole of a molecular substance (6.022 1415(10) x 10^23 molecules)...
Definition: cv.hpp:913
MS_metabolic_labelling_purity
metabolic labelling purity: Metabolic labelling: Description of labelling purity. Usually the purity ...
Definition: cv.hpp:6499
UO_nanoliter
nanoliter: A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L...
Definition: cv.hpp:12802
MS_DB_composition_target_decoy
DB composition target+decoy: Decoy database composition: database contains original (target) and deco...
Definition: cv.hpp:3874
MS_H3PO4_neutral_loss_OBSOLETE
H3PO4 neutral loss: Neutral loss of phosphoric acid.
Definition: cv.hpp:7663
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuGc_1_
dHex(2)Hex(3)HexNAc(3)NeuGc(1): DHex(2) Hex(3) HexNAc(3) NeuGc.
Definition: cv.hpp:12331
MS_Orbitrap_Fusion
Orbitrap Fusion: Thermo Scientific Orbitrap Fusion.
Definition: cv.hpp:7540
MS_EM
EM (electron multiplier): A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:1063
MS_Phenyx_Peptides2
Phenyx:Peptides2: Second number of phenyx result "#Peptides".
Definition: cv.hpp:4426
UNIMOD_GeranylGeranyl
GeranylGeranyl: Geranyl-geranyl.
Definition: cv.hpp:8536
UNIMOD_unimod_root_node
unimod root node: The root node of the unimod modifications ontology.
Definition: cv.hpp:8419
UNIMOD_Triiodo
Triiodo: Tri-Iodination.
Definition: cv.hpp:8677
MS_peptide_start_positions_on_chromosome
peptide start positions on chromosome: A comma separated list of start positions within exons to whic...
Definition: cv.hpp:8227
MS_UniProtKB_XML_sequence_format
UniProtKB XML sequence format: XML-based format used by UniProtKB for sequence entries.
Definition: cv.hpp:8281
UNIMOD_dHex_1_Hex_7_HexNAc_2_
dHex(1)Hex(7)HexNAc(2): DHex Hex(7) HexNAc(2).
Definition: cv.hpp:11644
MS_GCT
GCT: Waters oa-ToF based GCT.
Definition: cv.hpp:685
MS_decoy_DB_type_shuffle
decoy DB type shuffle: Decoy type: Amino acids of protein sequences are used in a random order...
Definition: cv.hpp:4597
UNIMOD_O_pinacolylmethylphosphonate
O-pinacolylmethylphosphonate: O-pinacolylmethylphosphonylation.
Definition: cv.hpp:9904
MS_peptide_attribute_calculation_software
peptide attribute calculation software: Software used to predict or calculate numerical attributes of...
Definition: cv.hpp:3169
MS_frag__internal_yb_ion
frag: internal yb ion: Fragmentation information, type of product: internal yb ion.
Definition: cv.hpp:4345
MS_MALDI_Synapt_MS
MALDI Synapt MS: Waters oa-ToF based MALDI Synapt MS.
Definition: cv.hpp:5584
UNIMOD_Label_13C_3_15N_1_
Label:13C(3)15N(1): 13C3 15N1 label for SILAC.
Definition: cv.hpp:11164
MS_Andromeda
Andromeda: Andromeda is a peptide search engine.
Definition: cv.hpp:7303
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_2_
dHex(2)Hex(3)HexNAc(4)Pent(2): DHex(2) Hex(3) HexNAc(4) Pent(2).
Definition: cv.hpp:11728
MS_ProteomeDiscoverer_Amanda_middle_confidence_threshold
ProteomeDiscoverer:Amanda:middle confidence threshold: Relaxed confidence probability score...
Definition: cv.hpp:7243
MS_spectrum_subsumable_protein
spectrum subsumable protein: A spectrum same-set or spectrum sub-set protein where the matches are di...
Definition: cv.hpp:5053
MS_Pro_Quant
Pro Quant: Applied Biosystems|MDS SCIEX software for protein ID and quant by iTRAQ.
Definition: cv.hpp:2527
MS_API_350
API 350: Applied Biosystems/MDS SCIEX API 350 MS.
Definition: cv.hpp:8062
MS_homolytic_cleavage_OBSOLETE
homolytic cleavage: Fragmentation of an odd electron ion that results from one of a pair of electrons...
Definition: cv.hpp:1693
UNIMOD_Hex_3_HexNAc_7_
Hex(3)HexNAc(7): Hex(3) HexNAc(7).
Definition: cv.hpp:11764
MS_NRMS
NRMS (neutralization reionization mass spectrometry): With this technique, m/z selected ions form neu...
Definition: cv.hpp:1180
UNIMOD_GEE
GEE: Transamidation of glycine ethyl ester to glutamine.
Definition: cv.hpp:12484
UNIMOD_Met__Arg
Met->Arg: Met->Arg substitution.
Definition: cv.hpp:9646
MS_MALDI_matrix_application
MALDI matrix application: Attributes to describe the technique how the sample is prepared with the ma...
Definition: cv.hpp:3040
MS_SSRCalc
SSRCalc: Sequence Specific Retention Calculator estimates the retention time of peptides based on the...
Definition: cv.hpp:3172
MS_DB_MW_filter
DB MW filter: Filtering applied specifically by protein molecular weight, specified as either a range...
Definition: cv.hpp:3412
UNIMOD_Gly__Met
Gly->Met: Gly->Met substitution.
Definition: cv.hpp:10636
MS_heterolytic_cleavage_OBSOLETE
heterolytic cleavage: Fragmentation of a molecule or ion in which both electrons forming the single b...
Definition: cv.hpp:1681
MS_MSQuant_PTM_score_threshold
MSQuant:PTM-score threshold: Threshold for MSQuant:PTM-score.
Definition: cv.hpp:7981
MS_quantitation_software_name
quantitation software name: Quantitation software name.
Definition: cv.hpp:3724
UNIMOD_Molybdopterin
Molybdopterin: Molybdopterin.
Definition: cv.hpp:9148
UNIMOD_Glu__His
Glu->His: Glu->His substitution.
Definition: cv.hpp:10555
MS_LTQ
LTQ: Finnigan LTQ MS.
Definition: cv.hpp:1774
MS_isolation_window_lower_offset
isolation window lower offset: The extent of the isolation window in m/z below the isolation window t...
Definition: cv.hpp:3031
MS_3100
3100: Waters quadrupole based 3100.
Definition: cv.hpp:5614
MS_space_charge_effect
space charge effect: The mutual repulsion of particles of like charge that limits the current in a ch...
Definition: cv.hpp:1366
UNIMOD_Gly__His
Gly->His: Gly->His substitution.
Definition: cv.hpp:10627
MS_peptide_consensus_m_z
peptide consensus m/z: Peptide consensus mass/charge ratio.
Definition: cv.hpp:6487
UNIMOD_Farnesyl
Farnesyl: Farnesylation.
Definition: cv.hpp:8524
MS_MS1_feature_area
MS1 feature area: Area of MS1 feature.
Definition: cv.hpp:5788
UNIMOD_GlycerylPE
GlycerylPE: Glycerylphosphorylethanolamine.
Definition: cv.hpp:9163
UNIMOD_Ser__Glu
Ser->Glu: Ser->Glu substitution.
Definition: cv.hpp:10903
MS_peptide_MD_Score
peptide:MD-Score: MD-Score for PTM site location at the peptide-level.
Definition: cv.hpp:7957
MS_multi_collector
multi-collector: A detector system commonly used in inductively coupled plasma mass spectrometers...
Definition: cv.hpp:514
MS_BP
BP (base peak): The peak in a mass spectrum that has the greatest intensity. This term may be applied...
Definition: cv.hpp:853
UNIMOD_Phe__Lys
Phe->Lys: Phe->Lys substitution.
Definition: cv.hpp:10600
UNIMOD_Lys__Arg
Lys->Arg: Lys->Arg substitution.
Definition: cv.hpp:9610
MS_lowest_observed_wavelength
lowest observed wavelength: Lowest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2368
MS_analog_ion_OBSOLETE
analog ion: Ions that have similar chemical valence, for example the acetyl cation CH3-CO+ and the th...
Definition: cv.hpp:1486
MS_group_PSMs_by_sequence_with_modifications_and_charge
group PSMs by sequence with modifications and charge: Group PSMs by distinct peptide sequence with ta...
Definition: cv.hpp:7786
UNIMOD_BMP_piperidinol
BMP-piperidinol: 1-methyl-3-benzoyl-4-hydroxy-4-phenylpiperidine.
Definition: cv.hpp:11128
MS_microflex_II
microflex II: Bruker Daltonics&#39; microflex II: MALDI TOF.
Definition: cv.hpp:4897
MS_statistical_threshold
statistical threshold: Estimated statistical threshold.
Definition: cv.hpp:7738
UNIMOD_Hex_3_HexNAc_1_Pent_1_
Hex(3)HexNAc(1)Pent(1): Hex3HexNAc1Pent1.
Definition: cv.hpp:8737
MS_None____OBSOLETE
None ??: None.
Definition: cv.hpp:469
MS_high_energy_collision_OBSOLETE
high energy collision: Collision-induced dissociation process wherein the projectile ion has laborato...
Definition: cv.hpp:1684
MS_taxonomy__Swiss_Prot_ID
taxonomy: Swiss-Prot ID: This term is used if a swiss prot taxonomy id is specified, e.g. Human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4648
MS_ProteomeDiscoverer_Number_of_input2_spectra
ProteomeDiscoverer:Number of input2 spectra: Number of spectra from 2+ precursor ions.
Definition: cv.hpp:5443
MS_ProteomeDiscoverer_SEQUEST_Weight_of_b_Ions
ProteomeDiscoverer:SEQUEST:Weight of b Ions: Uses b ions for spectrum matching with this relative fac...
Definition: cv.hpp:5323
MS_Progenesis_protein_group_normalised_abundance
Progenesis:protein group normalised abundance: The data type normalised abundance for protein groups ...
Definition: cv.hpp:7846
MS_isoelectric_point
isoelectric point: The pH of a solution at which a charged molecule does not migrate in an electric f...
Definition: cv.hpp:3130
MS_continuous_flow_fast_atom_bombardment
continuous flow fast atom bombardment: Fast atom bombardment ionization in which the analyte in solut...
Definition: cv.hpp:280
MS_Compass_for_micrOTOF
Compass for micrOTOF: Bruker Compass for micrOTOF software.
Definition: cv.hpp:2659
MS_Pegasus_4D
Pegasus 4D: LECO nominal mass resolution time-of-flight GCxGC mass spectrometer.
Definition: cv.hpp:6100
MS_SCIEX_TOF_TOF_T2D_format
SCIEX TOF/TOF T2D format: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument export fo...
Definition: cv.hpp:4921
MS_scan_law
scan law: Describes the function in control of the m/z scan (for scanning instruments). Commonly the scan function is linear, but in principle any function can be used.
Definition: cv.hpp:157
UO_joule
joule: An energy unit which is equal to the energy required when a force of 1 newton moves an object ...
Definition: cv.hpp:12832
MS_frag__y_ion___NH3
frag: y ion - NH3: Ion y-NH3 fragmentation information, type of product: y ion without ammonia...
Definition: cv.hpp:3979
MS_Mascot_MinMSMSThreshold
Mascot:MinMSMSThreshold: Mascot peptide match ion score threshold. If between 0 and 1...
Definition: cv.hpp:4210
std::multimap< std::string, std::string > propertyValues
Definition: cv.hpp:13394
MS_database_IPI_arabidopsis
database IPI_arabidopsis: International Protein Index database for Arabidopsis thaliana sequences...
Definition: cv.hpp:4120
MS_Progenesis_protein_raw_abundance
Progenesis:protein raw abundance: The data type raw abundance for proteins produced by Progenesis LC-...
Definition: cv.hpp:5932
MS_IRMS_OBSOLETE
IRMS (isotope ratio mass spectrometry): The measurement of the relative quantity of the different iso...
Definition: cv.hpp:1123
MS_base_peak_intensity
base peak intensity: The intensity of the greatest peak in the mass spectrum.
Definition: cv.hpp:1969
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Ac_1_
Hex(1)HexNAc(1)NeuAc(1)Ac(1): Ac Hex HexNAc NeuAc.
Definition: cv.hpp:12466
MS_contact_phone_number
contact phone number: Phone number of the contact person or organization.
Definition: cv.hpp:5521
MS_IonSpec_instrument_model
IonSpec instrument model: IonSpec corporation instrument model.
Definition: cv.hpp:547
UNIMOD_dHex_3_Hex_4_HexNAc_4_Sulf_1_
dHex(3)Hex(4)HexNAc(4)Sulf(1): DHex(3) Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:11815
MS_protein_value__median_of_peptide_ratios
protein value: median of peptide ratios: Protein quantification value calculated as median of peptide...
Definition: cv.hpp:6493
UNIMOD_LG_lactam_R
LG-lactam-R: Levuglandinyl - arginine lactam adduct.
Definition: cv.hpp:9376
UO_millimeter
millimeter: A length unit which is equal to one thousandth of a meter or 10^[-3] m.
Definition: cv.hpp:12544
MS_Daly
Daly (daly detector): Detector consisting of a conversion dynode, scintillator and photomultiplier...
Definition: cv.hpp:493
UNIMOD_Gln__Lys
Gln->Lys: Gln->Lys substitution.
Definition: cv.hpp:9703
MS_SCIEX_API_III_format
SCIEX API III format: PE SCIEX peak list file format.
Definition: cv.hpp:4015
MS_frag__z_1_ion
frag: z+1 ion: Fragmentation information, type of product: z+1 ion.
Definition: cv.hpp:4351
UNIMOD_DTT_C_2H_6_
DTT_C:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of cysteines. ...
Definition: cv.hpp:9973
MS_MS_GF_PEP
MS-GF:PEP: MS-GF posterior error probability.
Definition: cv.hpp:6460
MS_TOPP_SpectraFilterParentPeakMower
TOPP SpectraFilterParentPeakMower: Filters putative unfragmented precursor ions from tandem spectra...
Definition: cv.hpp:6715
UO_spatial_resolution_unit
spatial resolution unit: An image resolution unit which is a standard measure of the way luminance an...
Definition: cv.hpp:13207
MS_data_filtering
data filtering: Filtering out part of the data.
Definition: cv.hpp:4705
MS_inductive_detector
inductive detector: Inductive detector.
Definition: cv.hpp:2386
UNIMOD_Ala__His
Ala->His: Ala->His substitution.
Definition: cv.hpp:10453
MS_percent_of_base_peak
percent of base peak: The magnitude of a peak or measurement element expressed in terms of the percen...
Definition: cv.hpp:583
UO_unit_of_molality
unit of molality: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:12697
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Peak
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Peak: Determines whether precursor artifact p...
Definition: cv.hpp:5140
UNIMOD_Glu__pyro_Glu
Glu->pyro-Glu: Pyro-glu from E.
Definition: cv.hpp:8482
MS_quantification_reagent
quantification reagent: Reagent used in labeled quantification methods.
Definition: cv.hpp:8101
MS_Tranche_file_hash
Tranche file hash: Hash assigned by the Tranche resource to an individual file.
Definition: cv.hpp:6043
UNIMOD_Gly__Thr
Gly->Thr: Gly->Thr substitution.
Definition: cv.hpp:10648
UO_microeinstein_per_square_meter_per_second
microeinstein per square meter per second: An irradiance unit which is equal to one microeinstein per...
Definition: cv.hpp:12970
MS_mattauch_herzog_geometry_OBSOLETE
mattauch-herzog geometry: An arrangement for a double-focusing mass spectrometer in which a deflectio...
Definition: cv.hpp:1294
MS_PIA_protein_score
PIA:protein score: The score given to a protein by any protein inference.
Definition: cv.hpp:7474
std::vector< CVID > id_list
Definition: cv.hpp:13389
MS_parent_mass_type_mono
parent mass type mono: Mass type setting for parent mass was monoisotopic.
Definition: cv.hpp:3910
MS_SEQUEST_matched_ions
SEQUEST:matched ions: The SEQUEST result &#39;Matched Ions&#39;.
Definition: cv.hpp:3790
UNIMOD_Asp__Val
Asp->Val: Asp->Val substitution.
Definition: cv.hpp:9511
MS_ProteinLynx_Global_Server
ProteinLynx Global Server: Waters software for data analysis.
Definition: cv.hpp:2311
MS_SCIEX_instrument_model
SCIEX instrument model: The brand of instruments from the joint venture between Applied Biosystems an...
Definition: cv.hpp:541
UNIMOD_Dipyridyl
Dipyridyl: Cys modified with dipy ligand.
Definition: cv.hpp:11119
UNIMOD_Carboxymethyl_13C_2_
Carboxymethyl:13C(2): Iodoacetic acid derivative w/ 13C label.
Definition: cv.hpp:10000
MS_lab_head
lab head: The scientist responsible for personnel, grants, and instrumentation in a functional labora...
Definition: cv.hpp:7288
UO_turns_per_second
turns per second: A rotational frequency unit which is equal to the number complete turn in a period ...
Definition: cv.hpp:12772
MS_CLINPROT
CLINPROT: Bruker CLINPROT software.
Definition: cv.hpp:2641
MS_Paragon__quantitation
Paragon: quantitation: The Paragon method setting that controls whether quantitation analysis is cond...
Definition: cv.hpp:7576
MS_4700_Explorer
4700 Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2065
MS_massWolf
massWolf: A software for converting Waters raw directory format to mzXML or mzML. MassWolf was origin...
Definition: cv.hpp:2068
MS_database_version_OBSOLETE
database version: OBSOLETE: Use attribute in mzIdentML instead. Version of the search database...
Definition: cv.hpp:3394
MS_TOPP_NoiseFilterSGolay
TOPP NoiseFilterSGolay: Removes noise from profile spectra by using a Savitzky-Golay smoothing...
Definition: cv.hpp:6688
MS_Agilent_MassHunter_format
Agilent MassHunter format: A data file format found in an Agilent MassHunter directory which contains...
Definition: cv.hpp:4774
MS_TOPP_software_adaptor
TOPP software adaptor: Software adaptor to an external program in the TOPP software.
Definition: cv.hpp:6829
UO_radian_per_second
radian per second: An angular unit velocity which is equal to about 9.54930 rpm (revolutions per minu...
Definition: cv.hpp:12733
UNIMOD_DiART6plex117
DiART6plex117: Accurate mass for DiART6plex 117.
Definition: cv.hpp:11356
MS_electrospray_supply_type
electrospray supply type: Whether the sprayer is fed or is loaded with sample once.
Definition: cv.hpp:6085
MS_compact
compact: Bruker Daltonics&#39; compact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7129
MS_____W_
(?<=W): Regular expression for 2-iodobenzoate.
Definition: cv.hpp:6145
MS_binomial_smoothing
binomial smoothing (Gaussian smoothing): Reduces intensity spikes by convolving the data with a one-d...
Definition: cv.hpp:2875
MS_sample_name
sample name: A reference string relevant to the sample under study.
Definition: cv.hpp:106
MS_sustained_off_resonance_irradiation
sustained off-resonance irradiation: A technique associated with Fourier transform ion cyclotron reso...
Definition: cv.hpp:1237
MS_API_5000
API 5000: SCIEX or Applied Biosystems|MDS SCIEX API 5000 MS.
Definition: cv.hpp:2482
UNIMOD_Val__Ser
Val->Ser: Val->Ser substitution.
Definition: cv.hpp:10972
MS_mass_resolving_power
mass resolving power: The observed mass divided by the difference between two masses that can be sepa...
Definition: cv.hpp:2935
MS_MassHunter_Data_Acquisition
MassHunter Data Acquisition: Software for data acquisition of 6000 series instruments.
Definition: cv.hpp:2551
UO_mass_per_unit_volume
mass per unit volume: A concentration unit which is a standard measure of the mass of a substance in ...
Definition: cv.hpp:13030
UNIMOD_HexNAc_2_NeuAc_1_
HexNAc(2)NeuAc(1): HexNAc(2) NeuAc.
Definition: cv.hpp:11848
MS_source_sprayer
source sprayer: The source sprayer.
Definition: cv.hpp:6061
MS_magnetic_sector
magnetic sector: A device that produces a magnetic field perpendicular to a charged particle beam tha...
Definition: cv.hpp:379
UNIMOD_Hex_4_HexNAc_3_NeuAc_2_
Hex(4)HexNAc(3)NeuAc(2): Hex(4) HexNAc(3) NeuAc(2).
Definition: cv.hpp:11716
MS_normalized_protein_value
normalized protein value: Normalized protein value.
Definition: cv.hpp:5812
MS_SEQUEST_Consensus
SEQUEST:Consensus: Specify depth as value of the CVParam.
Definition: cv.hpp:3454
MS_cluster_identifier
cluster identifier: An identifier applied to protein groups to indicate that they are linked by share...
Definition: cv.hpp:7513
MS_LIFT
LIFT: A Bruker&#39;s proprietary technique where molecular ions are initially accelerated at lower energy...
Definition: cv.hpp:6274
MS_selected_ion_monitoring
selected ion monitoring: The operation of a mass spectrometer in which the intensities of several spe...
Definition: cv.hpp:823
MS_ProteomeDiscoverer_Mascot_Protein_CutOff_Score
ProteomeDiscoverer:Mascot:Protein CutOff Score: Minimum protein score in the IonScore column that eac...
Definition: cv.hpp:5236
UNIMOD_HexNAc_2_NeuAc_1_Sulf_1_
HexNAc(2)NeuAc(1)Sulf(1): HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:11884
UNIMOD_Hex_4_HexNAc_5_NeuAc_1_
Hex(4)HexNAc(5)NeuAc(1): Hex(4) HexNAc(5) NeuAc.
Definition: cv.hpp:11797
MS_chromatograph_file_format
chromatograph file format: The format of the chromatography file being used. This could be a instrume...
Definition: cv.hpp:7618
MS_Phenyx_XML_format
Phenyx XML format: Phenyx open XML file format.
Definition: cv.hpp:4630
MS_Mascot_ProteinScoringMethod
Mascot:ProteinScoringMethod: Mascot protein scoring method; either &#39;Standard&#39; or &#39;MudPIT&#39;.
Definition: cv.hpp:4207
UNIMOD_Biotin_Thermo_21911
Biotin:Thermo-21911: Biotin-PEG11-maleimide.
Definition: cv.hpp:11242
MS_Phenyx_Modif
Phenyx:Modif: The expression of the nature and position(s) of modified residue(s) on a matched peptid...
Definition: cv.hpp:4444
UNIMOD_Met__Ala
Met->Ala: Met->Ala substitution.
Definition: cv.hpp:10738
MS_OMSSA_input_parameter
OMSSA input parameter: Search engine input parameters specific to OMSSA.
Definition: cv.hpp:6589
UNIMOD_Arg__Gly
Arg->Gly: Arg->Gly substitution.
Definition: cv.hpp:9748
UNIMOD_Xle__Pro
Xle->Pro: Leu/Ile->Pro substitution.
Definition: cv.hpp:9625
MS_IsoPrime
IsoPrime: Waters IsoPrime MS.
Definition: cv.hpp:700
UO_kilowatt_hour
kilowatt-hour: An energy unit which is equal to 1,000 watt-hours.
Definition: cv.hpp:13162
MS_constant_neutral_mass_gain_spectrum
constant neutral mass gain spectrum (constant neutral gain spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1390
MS_empirical_formula
empirical formula: A chemical formula which expresses the proportions of the elements present in a su...
Definition: cv.hpp:3145
UNIMOD_Chlorination
Chlorination: Chlorination of tyrosine residues.
Definition: cv.hpp:10204
UNIMOD_Thr__His
Thr->His: Thr->His substitution.
Definition: cv.hpp:10936
MS_unlabeled_sample
unlabeled sample: A sample that has not been labelled or modified. This is often referred to as "ligh...
Definition: cv.hpp:6400
MS_2500_QTRAP
2500 QTRAP: SCIEX 2500 QTRAP.
Definition: cv.hpp:8029
MS_SEQUEST_sprank
SEQUEST:sprank: The SEQUEST result &#39;SpRank&#39;.
Definition: cv.hpp:7036
MS_ProteomeDiscoverer_Number_of_input4_spectra
ProteomeDiscoverer:Number of input4 spectra: Number of spectra from 4+ precursor ions.
Definition: cv.hpp:5449
UNIMOD_Asn__Thr
Asn->Thr: Asn->Thr substitution.
Definition: cv.hpp:9661
MS_hybrid_mass_spectrometer_OBSOLETE
hybrid mass spectrometer: A mass spectrometer that combines m/z analyzers of different types to perfo...
Definition: cv.hpp:1279
UNIMOD_Cys__Ser
Cys->Ser: Cys->Ser substitution.
Definition: cv.hpp:9478
MS_translation_frame
translation frame: The translated open reading frames from a nucleotide database considered in the se...
Definition: cv.hpp:3418
UNIMOD_Label_13C_6_15N_2_
Label:13C(6)15N(2): 13C(6) 15N(2) Silac label.
Definition: cv.hpp:8863
MS_small_molecule_attribute
small molecule attribute: Attribute describing a small molecule.
Definition: cv.hpp:6643
UO_parts_per_hundred
parts per hundred: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:12991
UNIMOD_Methylamine
Methylamine: Michael addition with methylamine.
Definition: cv.hpp:9028
MS_alternate_single_letter_codes
alternate single letter codes: List of standard residue one letter codes which are used to replace a ...
Definition: cv.hpp:4330
MS_number_of_peaks_submitted
number of peaks submitted: The number of peaks from the original peaks listed that were submitted to ...
Definition: cv.hpp:3679
MS_mass_spectrograph_obsolete_OBSOLETE
mass spectrograph obsolete: An instrument that separates a beam of ions according to their mass-to-ch...
Definition: cv.hpp:1285
MS_non_classical_ion_OBSOLETE
non-classical ion: Hyper-coordinated carbonium ion such as the penta-coordinated norbornyl cation...
Definition: cv.hpp:1534
UNIMOD_benzylguanidine
benzylguanidine: Modification of the lysine side chain from NH2 to guanidine with a H removed in favo...
Definition: cv.hpp:11260
UNIMOD_LG_anhydrolactam
LG-anhydrolactam: Levuglandinyl-lysine anhydrolactam adduct.
Definition: cv.hpp:10231
MS_PEAKS_Node
PEAKS Node: PEAKS Node software for high throughput data analysis.
Definition: cv.hpp:6109
MS_modification_localization_scoring
modification localization scoring: Modification localization scoring performed.
Definition: cv.hpp:7765
MS_TruTOF
TruTOF: LECO bench-top GC time-of-flight mass spectrometer.
Definition: cv.hpp:5668
UNIMOD_Ala__Ser
Ala->Ser: Ala->Ser substitution.
Definition: cv.hpp:9454
MS_spectrum
spectrum: A mass spectrum is an intensity vs m/z (mass-to-charge ratio) plot representing a chemical ...
Definition: cv.hpp:1756
MS_direct_inlet
direct inlet: The sample is directly inserted into the ion source, usually on the end of a heatable p...
Definition: cv.hpp:286
UNIMOD_Hex_7_HexNAc_3_Phos_1_
Hex(7)HexNAc(3)Phos(1): Hex(7) HexNAc(3) Phos.
Definition: cv.hpp:11707
UO_kilogram_meter_per_second
kilogram meter per second: A momentum unit which is equal to the momentum of a one kilogram mass obje...
Definition: cv.hpp:12769
MS_PSM_is_used_for_peptide_level_scoring
PSM is used for peptide-level scoring: Flags a PSM that it is used for peptide-level scoring...
Definition: cv.hpp:7801
MS_protein_level_PSM_counts
protein level PSM counts: The number of spectra identified for this protein in spectral counting...
Definition: cv.hpp:6748
MS_sprayed_MALDI_matrix_preparation
sprayed MALDI matrix preparation: Sprayed MALDI matrix preparation.
Definition: cv.hpp:3058
MS_frag__a_ion___H2O
frag: a ion - H2O: Fragmentation information, type of product: a ion without water.
Definition: cv.hpp:3982
UNIMOD_Lys__His
Lys->His: Lys->His substitution.
Definition: cv.hpp:10720
MS_isolation_window_lower_limit_OBSOLETE
isolation window lower limit: The lowest m/z being isolated in an isolation window.
Definition: cv.hpp:2917
MS_TOPP_IDMerger
TOPP IDMerger: Merges several protein/peptide identification files into one file. ...
Definition: cv.hpp:6754
MS_APCI
APCI (atmospheric pressure chemical ionization): Chemical ionization that takes place at atmospheric ...
Definition: cv.hpp:331
MS_time_unit_OBSOLETE
time unit: Time Unit.
Definition: cv.hpp:2107
MS_retention_time_alignment
retention time alignment: The correction of the spectrum scan times, as used e.g. in label-free prote...
Definition: cv.hpp:2752
MS_spectrum_identifier_nativeID_format
spectrum identifier nativeID format: Native format defined by spectrum=xsd:nonNegativeInteger.
Definition: cv.hpp:2851
MS_MS_Amanda_csv_format
MS Amanda csv format: MS Amanda csv output format.
Definition: cv.hpp:7669
UNIMOD_Hex_2_NeuAc_1_
Hex(2)NeuAc(1): Hex(2) NeuAc.
Definition: cv.hpp:11476
MS_____DE__
(?=[DE]): Regular expression for Asp-N-ambic.
Definition: cv.hpp:4090
MS_FT_ICR
FT_ICR (fourier transform ion cyclotron resonance mass spectrometer): A mass spectrometer based on th...
Definition: cv.hpp:376
UNIMOD_Ser__Xle
Ser->Xle: Ser->Leu/Ile substitution.
Definition: cv.hpp:9778
MS_ProteinExtractor_MinNumberOfPeptides
ProteinExtractor:MinNumberOfPeptides: The minimum number of proteins to consider. ...
Definition: cv.hpp:4528
UO_radiation_unit
radiation unit: A unit which is a standard measure of the amount of radiation emitted by a given radi...
Definition: cv.hpp:12874
UNIMOD_NA_OA_NO2
NA-OA-NO2: Nitroalkylation by Nitro Oleic Acid.
Definition: cv.hpp:9868
UNIMOD_Succinyl
Succinyl: Succinic anhydride labeling reagent light form (N-term & K).
Definition: cv.hpp:8581
MS_kinetic_energy_analyzer
kinetic energy analyzer: A device for measuring the kinetic energy of charged particles using a retar...
Definition: cv.hpp:1342
MS_scan_mode_OBSOLETE
scan mode: OBSOLETE.
Definition: cv.hpp:211
UNIMOD_GPIanchor
GPIanchor: Glycosylphosphatidylinositol.
Definition: cv.hpp:9157
MS_internal_protein_reference_used
internal protein reference used: States whether an internal protein reference is used or not in absol...
Definition: cv.hpp:7840
MS_spectrum_from_ProteinScape_database_nativeID_format
spectrum from ProteinScape database nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4840
UO_nanomole
nanomole: A substance unit equal to one thousandth of one millionth of a mole or 10^[-9] mol...
Definition: cv.hpp:12619
MS_PEAKS_inChorusPeptideScore
PEAKS:inChorusPeptideScore: The PEAKS inChorus peptide score.
Definition: cv.hpp:7636
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge1: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5392
UNIMOD_Hex_2_HexNAc_1_NeuGc_2_
Hex(2)HexNAc(1)NeuGc(2): Hex(2) HexNAc NeuGc(2).
Definition: cv.hpp:12064
MS_Comet_matched_ions
Comet:matched ions: The Comet result &#39;Matched Ions&#39;.
Definition: cv.hpp:7063
UNIMOD_CLIP_TRAQ_3
CLIP_TRAQ_3: CLIP_TRAQ_3.
Definition: cv.hpp:9442
MS_number_of_peptide_seqs_compared_to_each_spectrum
number of peptide seqs compared to each spectrum: Number of peptide seqs compared to each spectrum...
Definition: cv.hpp:3436
MS_multiple_reaction_monitoring_OBSOLETE
multiple reaction monitoring: This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:451
UNIMOD_HPG
HPG: Hydroxyphenylglyoxal arginine.
Definition: cv.hpp:8785
MS_ChromaTOF_software
ChromaTOF software: Software for acquisition, processing and analysis of data for LECO instruments...
Definition: cv.hpp:5653
MS_highest_observed_m_z
highest observed m/z: Highest m/z value observed in the m/z array.
Definition: cv.hpp:2035
MS_Phenyx_MinPepzscore
Phenyx:MinPepzscore: The minimal peptide z-score for a peptide to be considered for a valid identific...
Definition: cv.hpp:4402
MS_apex_IV
apex IV: Bruker Daltonics&#39; apex IV: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR. ...
Definition: cv.hpp:631
MS_residue_pair_level_global_FDR
residue-pair-level global FDR: Estimation of the global false discovery rate of residue-pairs in cros...
Definition: cv.hpp:8332
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_2_
dHex(2)Hex(3)HexNAc(3)NeuAc(2): DHex(2) Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:12382
MS_no_special_processing
no special processing: No special processing performed.
Definition: cv.hpp:7777
MS_SpectrumMill_directories
SpectrumMill directories: Source file for this mzIdentML was in Agilent SpectrumMill directory format...
Definition: cv.hpp:4942
MS_software_vendor
software vendor: Software vendor role.
Definition: cv.hpp:4069
MS_source_interface_model
source interface model: The source interface model.
Definition: cv.hpp:6058
MS_detector
detector: The device that detects ions.
Definition: cv.hpp:1798
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1): DHex Hex(5) HexNAc(3) NeuGc.
Definition: cv.hpp:11746
MS_FAIMS_CV
FAIMS CV (FAIMS compensation voltage): The DC potential applied to the asymmetric waveform in FAIMS t...
Definition: cv.hpp:4987
UNIMOD_s_GlcNAc
s-GlcNAc: O3S1HexNAc1.
Definition: cv.hpp:11398
UNIMOD_Ethylphosphate
Ethylphosphate: O-Ethylphosphorylation.
Definition: cv.hpp:9901
MS_OMSSA_csv_format
OMSSA csv format: Source file for this mzIdentML was in OMSSA csv file format.
Definition: cv.hpp:4447
MS_ISQ
ISQ: Thermo Scientific ISQ single quadrupole MS with the ExtractraBrite source.
Definition: cv.hpp:5980
UO_nanosecond
nanosecond: A time unit which is equal to one thousandth of one millionth of a second or 10^[-9] s...
Definition: cv.hpp:12940
MS_ions_series_considered_in_search
ions series considered in search: The description of the DEPRECATED ion fragment series (including ch...
Definition: cv.hpp:3523
UNIMOD_Butyryl
Butyryl: Butyryl.
Definition: cv.hpp:11146
UNIMOD_Asn__Glu
Asn->Glu: Asn->Glu substitution.
Definition: cv.hpp:10783
UNIMOD_TMT
TMT: Native Tandem Mass Tag®.
Definition: cv.hpp:9934
UNIMOD_Glu__Asp
Glu->Asp: Glu->Asp substitution.
Definition: cv.hpp:9520
MS_SEQUEST
SEQUEST: The name of the SEQUEST search engine.
Definition: cv.hpp:3901
MS_absorption_chromatogram
absorption chromatogram: The measurement of light absorbed by the sample as a function of the retenti...
Definition: cv.hpp:2983
UNIMOD_Hex_2_HexNAc_3_NeuGc_3_
Hex(2)HexNAc(3)NeuGc(3): Hex(2) HexNAc(3) NeuGc(3).
Definition: cv.hpp:12364
MS_SEQUEST_sort_by_z
SEQUEST:sort by z: Sort order of SEQUEST search results given by the charge.
Definition: cv.hpp:3589
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_MS_Order_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow MS Order Mismatch: Determines whether spectra from differen...
Definition: cv.hpp:5146
UNIMOD_NHS_LC_Biotin
NHS-LC-Biotin: NHS-LC-Biotin.
Definition: cv.hpp:8599
MS_identification_attribute
identification attribute: Attribute of an identification item in the result of mass spectrometry prot...
Definition: cv.hpp:8380
UO_counts_per_minute
counts per minute: An activity (of a radionuclide) unit which is equal to the number of light emissio...
Definition: cv.hpp:12937
MS_ProteomeDiscoverer_Mascot_Mascot_Server_URL
ProteomeDiscoverer:Mascot:Mascot Server URL: URL (Uniform resource Locator) of the Mascot server...
Definition: cv.hpp:5203
MS_Bruker_BAF_format
Bruker BAF format: Bruker BAF raw file format.
Definition: cv.hpp:2992
MS_source
source: Terms to describe the source.
Definition: cv.hpp:1816
MS_frag__w_ion
frag: w ion: Fragmentation information, type of product: w ion.
Definition: cv.hpp:3994
MS_database_local_file_path_OBSOLETE
database local file path: OBSOLETE: Use attribute in mzIdentML instead. Local file path of the search...
Definition: cv.hpp:3388
UNIMOD_Pro__Lys
Pro->Lys: Pro->Lys substitution.
Definition: cv.hpp:10825
UNIMOD_Glu__Asn
Glu->Asn: Glu->Asn substitution.
Definition: cv.hpp:10564
UNIMOD_Asp__Tyr
Asp->Tyr: Asp->Tyr substitution.
Definition: cv.hpp:9505
MS_first_stability_region
first stability region: The region of a Mathieu stability diagram closest to the origin. Ions within this region can traverse the full length of a transmission quadrupole.
Definition: cv.hpp:1336
MS_contact_affiliation
contact affiliation: Home institution of the contact person.
Definition: cv.hpp:2269
UO_catalytic_activity_unit
catalytic activity unit: A unit which is a standard measure of the amount of the action of a catalyst...
Definition: cv.hpp:12853
MS_API_4000
API 4000: Applied Biosystems/MDS SCIEX API 4000 MS.
Definition: cv.hpp:649
UNIMOD_Oxidation_NEM
Oxidation+NEM: N-ethylmaleimide on cysteine sulfenic acid.
Definition: cv.hpp:11341
MS_metabolic_labeling_14N___15N_quantitation_analysis
metabolic labeling 14N / 15N quantitation analysis: Metabolic labeling workflow (heavy and light vers...
Definition: cv.hpp:5773
MS_X_Tandem_expect
X!Tandem:expect: The X!Tandem expectation value.
Definition: cv.hpp:4240
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_1_
dHex(1)Hex(5)HexNAc(4)NeuAc(1): DHex Hex(5) HexNAc(4) NeuAc.
Definition: cv.hpp:11392
MS_target_SRM_transition
target SRM transition: A transition used to target a specific compound that may be in the sample...
Definition: cv.hpp:6298
MS_ProCon
ProCon: Java software designed to convert one of several proteomics identification results formats in...
Definition: cv.hpp:7294
UNIMOD_Label_2H_9_13C_6_15N_2_
Label:2H(9)13C(6)15N(2): 13C(6) 15N(2) (D)9 SILAC label.
Definition: cv.hpp:9877
UNIMOD_PET
PET: Phosphorylation to pyridyl thiol.
Definition: cv.hpp:8875
MS_ProteinScape_ProfoundProbability
ProteinScape:ProfoundProbability: The Profound probability score stored by ProteinScape.
Definition: cv.hpp:4738
UO_pi
pi: A dimensionless unit which denoted an irrational real number, approximately equal to 3...
Definition: cv.hpp:13054
UO_micrometer
micrometer: A length unit which is equal to one millionth of a meter or 10^[-6] m.
Definition: cv.hpp:12547
MS_Xevo_TQD
Xevo TQD: Waters quadrupole based Xevo TQD.
Definition: cv.hpp:5629
UNIMOD_Asp__Arg
Asp->Arg: Asp->Arg substitution.
Definition: cv.hpp:10537
UNIMOD_Pro__Gly
Pro->Gly: Pro->Gly substitution.
Definition: cv.hpp:10822
MS_SpectraST
SpectraST: SpectraST was used to analyze the spectra.
Definition: cv.hpp:4678
UNIMOD_dHex_1_Hex_5_HexNAc_5_
dHex(1)Hex(5)HexNAc(5): DHex Hex(5) HexNAc(5).
Definition: cv.hpp:11809
MS_emission_chromatogram
emission chromatogram: The measurement of light emitted by the sample as a function of the retention ...
Definition: cv.hpp:2986
MS_OpenXQuest_xcorr_xlink
OpenXQuest:xcorr xlink: OpenXQuest&#39;s cross-correlation of cross-linked ions subscore.
Definition: cv.hpp:8347
MS_Voyager_DE_PRO
Voyager-DE PRO: Applied Biosystems/MDS SCIEX Voyager-DE PRO MS.
Definition: cv.hpp:817
MS_peptide_level_statistical_threshold
peptide-level statistical threshold: Estimated statistical threshold at peptide-level.
Definition: cv.hpp:7744
UNIMOD_CresylSaligeninPhosphate
CresylSaligeninPhosphate: Cresyl-Saligenin-phosphorylation.
Definition: cv.hpp:11080
MS_vacuum_drying_MALDI_sample_preparation
vacuum drying MALDI sample preparation: Vacuum-drying MALDI sample preparation crystallization method...
Definition: cv.hpp:6232
UNIMOD_dHex_1_Hex_7_HexNAc_3_Phos_1_
dHex(1)Hex(7)HexNAc(3)Phos(1): DHex Hex(7) HexNAc(3) Phos.
Definition: cv.hpp:11806
UNIMOD_HexNAc_4_
HexNAc(4): HexNAc(4).
Definition: cv.hpp:11908
UNIMOD_UgiJoullie
UgiJoullie: Side reaction of HisTag.
Definition: cv.hpp:11116
MS_combined_pmf___ms_ms_search
combined pmf + ms-ms search: Search that includes data from Peptide Mass Fingerprint (PMF) and MS2 (a...
Definition: cv.hpp:4996
MS_pulsed_q_dissociation
pulsed q dissociation: A process that involves precursor ion activation at high Q, a time delay to allow the precursor to fragment, then a rapid pulse to low Q where all fragment ions are trapped. The product ions can then be scanned out of the ion trap and detected.
Definition: cv.hpp:2302
MS_PSM_level_p_value
PSM-level p-value: Estimation of the p-value for peptide spectrum matches.
Definition: cv.hpp:7348
MS_beam_type_collision_induced_dissociation
beam-type collision-induced dissociation: A collision-induced dissociation process that occurs in a b...
Definition: cv.hpp:1687
UNIMOD_Biotin_Thermo_21345
Biotin:Thermo-21345: Was PentylamineBiotin.
Definition: cv.hpp:10015
UNIMOD_Trp__Gly
Trp->Gly: Trp->Gly substitution.
Definition: cv.hpp:9838
UNIMOD_BDMAPP
BDMAPP: Mass Defect Tag on lysine e-amino.
Definition: cv.hpp:9862
MS_instrument_specific_scan_attribute
instrument specific scan attribute: Instrument specific scan properties that are associated with a va...
Definition: cv.hpp:7873
UNIMOD_Hex_3_HexNAc_4_Pent_1_
Hex(3)HexNAc(4)Pent(1): Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:11551
MS_spark_ionization
spark ionization: The formation of ions from a solid material by an intermittent electrical discharge...
Definition: cv.hpp:1633
MS_spectral_count_proteingroup_level_quantitation
spectral count proteingroup level quantitation: Spectral count proteingroup level quantitation...
Definition: cv.hpp:6337
MS_instrument_vendor
instrument vendor: Instrument vendor role.
Definition: cv.hpp:4075
UNIMOD_dHex_1_Hex_7_HexNAc_3_
dHex(1)Hex(7)HexNAc(3): DHex Hex(7) HexNAc(3).
Definition: cv.hpp:11755
UNIMOD_AEBS
AEBS: Aminoethylbenzenesulfonylation.
Definition: cv.hpp:8902
UNIMOD_Ub_Br2
Ub-Br2: Ub Bromide probe addition.
Definition: cv.hpp:11083
UNIMOD_Ser__Met
Ser->Met: Ser->Met substitution.
Definition: cv.hpp:10912
MS_mzidLib
mzidLib: A library of Java routines for manipulating mzIdentML files.
Definition: cv.hpp:7000
UO_centimeter
centimeter: A length unit which is equal to one hundredth of a meter or 10^[-2] m.
Definition: cv.hpp:12541
MS_peptide_group_ID
peptide group ID: Peptide group identifier for peptide-level stats.
Definition: cv.hpp:7852
MS_ProteinExtractor_GenerateNonRedundant
ProteinExtractor:GenerateNonRedundant: Flag indicating if a non redundant scoring should be generated...
Definition: cv.hpp:4516
UNIMOD_Label_2H_7_15N_4_
Label:2H(7)15N(4): Label:2H(7)15N(4).
Definition: cv.hpp:11374
MS_ProteomeDiscoverer_Enzyme_Name_OBSOLETE
ProteomeDiscoverer:Enzyme Name: Specifies the enzyme reagent used for protein digestion.
Definition: cv.hpp:5218
MS_frag__immonium_ion
frag: immonium ion: Fragmentation information, type of product: immonium ion.
Definition: cv.hpp:3997
MS_surface_induced_reaction_OBSOLETE
surface-induced reaction: A process wherein a reactant ion interacts with a surface to produce either...
Definition: cv.hpp:1747
MS_particle_beam
particle beam: Method for generating ions from a solution of an analyte.
Definition: cv.hpp:316
UNIMOD_dHex_2_Hex_2_HexNAc_1_
dHex(2)Hex(2)HexNAc(1): DHex(2) Hex(2) HexNAc.
Definition: cv.hpp:11917
MS_frag__b_ion
frag: b ion: Fragmentation information, type of product: b ion.
Definition: cv.hpp:3946
MS_TOPP_SpectraMerger
TOPP SpectraMerger: Merges spectra from an LC/MS map, either by precursor or by RT blocks...
Definition: cv.hpp:6760
MS_ion__OBSOLETE
ion?: An atomic or molecular species having a net positive or negative electric charge.
Definition: cv.hpp:1516
UNIMOD_sulfo_amino
sulfo+amino: Aminotyrosine with sulfation.
Definition: cv.hpp:10336
UNIMOD_Lys__Trp
Lys->Trp: Lys->Trp substitution.
Definition: cv.hpp:10732
UNIMOD_Xle__Val
Xle->Val: Leu/Ile->Val substitution.
Definition: cv.hpp:9628
UNIMOD_Hex_3_HexNAc_2_Pent_1_
Hex(3)HexNAc(2)Pent(1): Hex(3) HexNAc(2) Pent.
Definition: cv.hpp:11497
MS_MS2_format
MS2 format: MS2 file format for MS2 spectral data.
Definition: cv.hpp:4636
UO_day
day: A time unit which is equal to 24 hours.
Definition: cv.hpp:12595
UNIMOD_Biotin_PEO_Amine
Biotin-PEO-Amine: Biotin polyethyleneoxide amine.
Definition: cv.hpp:8926
MS_6520_Quadrupole_Time_of_Flight_LC_MS
6520 Quadrupole Time-of-Flight LC/MS: The 6520 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2548
MS_FAB
FAB (fast atom bombardment ionization): The ionization of any species by the interaction of a focused...
Definition: cv.hpp:355
MS_fast_atom_bombardment_ionization
fast atom bombardment ionization: The ionization of any species by the interaction of a focused beam ...
Definition: cv.hpp:352
UNIMOD_Ser__Pro
Ser->Pro: Ser->Pro substitution.
Definition: cv.hpp:9766
UNIMOD_Cys__Lys
Cys->Lys: Cys->Lys substitution.
Definition: cv.hpp:10495
MS_Unify
Unify: Waters Unify software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5641
UO_femtoliter
femtoliter: A volume unit which is equal to 10^[-15] L.
Definition: cv.hpp:12808
UNIMOD_dHex_2_Hex_3_HexNAc_4_
dHex(2)Hex(3)HexNAc(4): DHex(2) Hex(3) HexNAc(4).
Definition: cv.hpp:12430
MS_CXP
CXP (Collision cell exit potential): Potential difference between Q2 and Q3 in a triple quadrupole in...
Definition: cv.hpp:6097
MS_TOPP_MassTraceExtractor
TOPP MassTraceExtractor: Annotates mass traces in centroided LC/MS maps.
Definition: cv.hpp:6766
MS_PRIDE_Converter2
PRIDE Converter2: Java software designed to convert one of several proteomics identification results ...
Definition: cv.hpp:7297
MS_raw_data_file
raw data file: Describes the type of file and its content.
Definition: cv.hpp:2188
MS_PeptideShaker_PSM_confidence
PeptideShaker PSM confidence: The probability based PeptideShaker PSM confidence. ...
Definition: cv.hpp:7693
UNIMOD_Acetyl_13C_2_
Acetyl:13C(2): Heavy acetylation.
Definition: cv.hpp:11296
MS_no_threshold
no threshold: In case no threshold was used.
Definition: cv.hpp:4729
MS_PeptideShaker_PTM_confidence_type
PeptideShaker PTM confidence type: PeptideShaker quality criteria for the confidence of PTM localizat...
Definition: cv.hpp:7912
MS_METLIN
METLIN: Personal Metabolite Database for MassHunter Workstation. Software for identification of human...
Definition: cv.hpp:2575
MS_PSM_FDR_threshold
PSM:FDR threshold: False-discovery rate threshold for peptide-spectrum matches.
Definition: cv.hpp:7069
UO_rotational_frequency_unit
rotational frequency unit: A unit which is a standard measure of the number of rotations in a given t...
Definition: cv.hpp:12670
UNIMOD_Phosphopantetheine
Phosphopantetheine: Phosphopantetheine.
Definition: cv.hpp:8539
MS_sampling_frequency
sampling frequency: The rate of signal sampling (measurement) with respect to time.
Definition: cv.hpp:190
UNIMOD_dHex_1_Hex_2_HexNAc_4_NeuAc_2_
dHex(1)Hex(2)HexNAc(4)NeuAc(2): DHex Hex(2) HexNAc(4) NeuAc(2).
Definition: cv.hpp:12370
UNIMOD_Carboxy
Carboxy: Carboxylation.
Definition: cv.hpp:8950
UNIMOD_Label_13C_6_15N_4_
Label:13C(6)15N(4): 13C(6) 15N(4) Silac label.
Definition: cv.hpp:8878
MS_Waters_nativeID_format
Waters nativeID format: Native format defined by function=xsd:positiveInteger process=xsd:nonNegative...
Definition: cv.hpp:2827
MS_binary_data_compression_type
binary data compression type: Compression Type.
Definition: cv.hpp:2173
UNIMOD_dHex_1_Hex_2_HexNAc_2_Pent_1_
dHex(1)Hex(2)HexNAc(2)Pent(1): DHex Hex(2) HexNAc(2) Pent.
Definition: cv.hpp:11491
MS_analysis_software
analysis software: Analysis software.
Definition: cv.hpp:4609
UNIMOD_Asp__Met
Asp->Met: Asp->Met substitution.
Definition: cv.hpp:10528
MS_Laser_Desorption_OBSOLETE
Laser Desorption: The formation of ions through the interaction of a laser with a material or with ga...
Definition: cv.hpp:1138
MS_purgatory_OBSOLETE
purgatory: Terms that will likely become obsolete unless there are wails of dissent.
Definition: cv.hpp:1885
UNIMOD_Arg__Asp
Arg->Asp: Arg->Asp substitution.
Definition: cv.hpp:10882
UNIMOD_Carbamyl
Carbamyl: Carbamylation.
Definition: cv.hpp:8434
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(2) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12238
MS_X_Tandem
X!Tandem: X!Tandem was used to analyze the spectra.
Definition: cv.hpp:4675
UNIMOD_dNIC
dNIC: Deuterated Nicotinic Acid.
Definition: cv.hpp:9883
UNIMOD_Phycocyanobilin
Phycocyanobilin: Phycocyanobilin.
Definition: cv.hpp:9136
UNIMOD_NeuGc
NeuGc: N-glycoyl neuraminic acid.
Definition: cv.hpp:11185
MS_OpenXQuest_xcorr_common
OpenXQuest:xcorr common: OpenXQuest&#39;s cross-correlation of unlinked ions subscore.
Definition: cv.hpp:8350
UNIMOD_dHex_1_Hex_6_HexNAc_3_
dHex(1)Hex(6)HexNAc(3): DHex Hex(6) HexNAc(3).
Definition: cv.hpp:11671
UNIMOD_IBTP
IBTP: Thio Ether Formation - BTP Adduct.
Definition: cv.hpp:8647
MS_TOPP_ConsensusMapNormalizer
TOPP ConsensusMapNormalizer: Normalizes maps of one consensus XML file (after linking).
Definition: cv.hpp:6805
UNIMOD_dHex_1_Hex_1_HexNAc_1_Kdn_1_
dHex(1)Hex(1)HexNAc(1)Kdn(1): DHex Hex HexNAc Kdn.
Definition: cv.hpp:11878
MS_6420_Triple_Quadrupole_LC_MS
6420 Triple Quadrupole LC/MS: The 6420 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7624
MS_param__b_ion
param: b ion: Parameter information, type of product: b ion with charge on the N-terminal side...
Definition: cv.hpp:3661
UNIMOD_Ser__Val
Ser->Val: Ser->Val substitution.
Definition: cv.hpp:10918
MS_MaxQuant_PTM_Delta_Score
MaxQuant:PTM Delta Score: The PTM Delta Score value from MaxQuant software (Difference between highes...
Definition: cv.hpp:6220
MS_inclusive_low_intensity_threshold
inclusive low intensity threshold: Threshold at or below which some action is taken.
Definition: cv.hpp:2896
MS_Scaffold__Minimum_Peptide_Count
Scaffold: Minimum Peptide Count: Minimum number of peptides a protein must have to be accepted...
Definition: cv.hpp:4966
MS_SEQUEST_Sum
SEQUEST:Sum:
Definition: cv.hpp:4372
UO_gram_per_liter
gram per liter: A mass unit density which is equal to mass of an object in grams divided by the volum...
Definition: cv.hpp:13015
MS_Platform_ICP
Platform ICP: Waters Platform ICP MS.
Definition: cv.hpp:760
MS_sample_pre_fractionation
sample pre-fractionation: Sample pre-fractionation performed.
Definition: cv.hpp:7771
MS_modified_peptide_sequence
modified peptide sequence: A sequence of letter symbols denoting the order of amino acids that compos...
Definition: cv.hpp:3217
MS_Comet_xcorr
Comet:xcorr: The Comet result &#39;XCorr&#39;.
Definition: cv.hpp:7045
MS_SEQUEST_PeptideIdnumber
SEQUEST:PeptideIdnumber: The SEQUEST result &#39;Id#&#39; in out file (peptide).
Definition: cv.hpp:3931
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1): DHex Hex HexNAc(3) NeuAc.
Definition: cv.hpp:12097
UNIMOD_Dicarbamidomethyl
Dicarbamidomethyl: Double Carbamidomethylation.
Definition: cv.hpp:11149
MS_SymBiot_I
SymBiot I: Applied Biosystems/MDS SCIEX SymBiot I MS.
Definition: cv.hpp:790
MS_ion_molecule_reaction_OBSOLETE
ion/molecule reaction: The reaction of an ion with a neutral molecule. The term ion-molecule reaction...
Definition: cv.hpp:1705
MS_selected_ion_detection_OBSOLETE
selected ion detection: Please see Single Ion Monitoring.
Definition: cv.hpp:427
MS_peptide_exon_count
peptide exon count: The number of exons to which the peptide has been mapped.
Definition: cv.hpp:8221
MS_enhanced_resolution_scan
enhanced resolution scan (zoom scan): Special scan mode, where data with improved resolution is acqui...
Definition: cv.hpp:1945
MS_iProphet
iProphet: A program in the TPP that calculates distinct peptide probabilities based on several lines ...
Definition: cv.hpp:7156
MS_HiRes_ESI
HiRes ESI: IonSpec HiResESI MS.
Definition: cv.hpp:694
UO_cubic_meter_per_mole
cubic meter per mole: A molar volume unit which is equal to 1 cubic meter occupied by one mole of a s...
Definition: cv.hpp:12763
UO_square_meter
square meter: An area unit which is equal to an area enclosed by a square with sides each 1 meter lon...
Definition: cv.hpp:12736
UNIMOD_Ammonia_loss
Ammonia-loss: Loss of ammonia.
Definition: cv.hpp:9133
UNIMOD_AHA_Alkyne_KDDDD
AHA-Alkyne-KDDDD: Azidohomoalanine (AHA) bound to DDDDK-propargylglycine-NH2 (alkyne).
Definition: cv.hpp:10342
MS_DB_source_UniProt
DB source UniProt: Database source UniProt.
Definition: cv.hpp:4036
UO_unit_per_liter
unit per liter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amount p...
Definition: cv.hpp:13027
MS_mzTab
mzTab: Tabular result format for proteomics and metabolomics experiments.
Definition: cv.hpp:8098
MS_quantification_datatype
quantification datatype: The data type of the value reported in a QuantLayer for a feature...
Definition: cv.hpp:5671
MS_frag__x_ion___NH3
frag: x ion - NH3: Fragmentation information, type of product: x ion without ammonia.
Definition: cv.hpp:4807
MS_SWIFT
SWIFT (stored waveform inverse fourier transform): A technique to create excitation waveforms for ion...
Definition: cv.hpp:1252
MS_proportional_OBSOLETE
proportional: When resolution is proportional with respect to m/z.
Definition: cv.hpp:421
MS_product_ion_intensity_standard_deviation
product ion intensity standard deviation: Standard deviation of product ion intensity in a collection...
Definition: cv.hpp:6967
MS_mzidLib_CombineSearchEngines
mzidLib:CombineSearchEngines: A tool for combining results analysed in parallel in two or three searc...
Definition: cv.hpp:7027
MS_protein_group_level_global_FDR
protein group-level global FDR: Estimation of the global false discovery rate of protein groups...
Definition: cv.hpp:7399
MS_software_input_parameter
software input parameter: Software input parameters.
Definition: cv.hpp:6598
UNIMOD_dHex_1_Hex_4_HexNAc_3_Pent_1_
dHex(1)Hex(4)HexNAc(3)Pent(1): DHex Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:11578
MS_Phenyx_ID
Phenyx:ID: A secondary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4417
UNIMOD_Tripalmitate
Tripalmitate: N-acyl diglyceride cysteine.
Definition: cv.hpp:8545
MS_GC_IsoLink
GC IsoLink: Thermo Scientific GC IsoLink Isotope Ratio MS.
Definition: cv.hpp:2464
UNIMOD_Carboxyethyl
Carboxyethyl: Carboxyethyl.
Definition: cv.hpp:9118
UNIMOD_HexNAc_2_dHex_2_
HexNAc(2)dHex(2): HexNAc2dHex2.
Definition: cv.hpp:8725
UO_plaque_forming_unit
plaque forming unit: A dimensionless count unit which a measure of plague forming units in a given vo...
Definition: cv.hpp:13123
MS_mzidLib_Tandem2Mzid
mzidLib:Tandem2Mzid: A converter for Tandem XML to mzIdentML.
Definition: cv.hpp:7006
MS_database_type
database type: Database containing amino acid or nucleic acid sequences.
Definition: cv.hpp:3400
MS_FlexControl
FlexControl: Bruker software for data acquisition.
Definition: cv.hpp:2077
MS_contact_URL
contact URL: Uniform Resource Locator related to the contact person or organization.
Definition: cv.hpp:2263
MS_total_ion_current
total ion current: The sum of all the separate ion currents carried by the ions of different m/z cont...
Definition: cv.hpp:1255
MS_ProteomeDiscoverer_Spectrum_Grouper_Precursor_Mass_Criterion
ProteomeDiscoverer:Spectrum Grouper:Precursor Mass Criterion: Groups spectra measured within the give...
Definition: cv.hpp:5152
MS_precursor_ion_detection_probability
precursor ion detection probability: Probability of detecting precursor when parent protein is presen...
Definition: cv.hpp:6958
UNIMOD_Delta_H_2_C_5_
Delta:H(2)C(5): MDA adduct +62.
Definition: cv.hpp:8992
UNIMOD_ICAT_G
ICAT-G: Gygi ICAT(TM) d0.
Definition: cv.hpp:8443
MS_decoy_DB_from_IPI_chicken_OBSOLETE
decoy DB from IPI_chicken: Decoy database from a International Protein Index database for Gallus gall...
Definition: cv.hpp:4144
MS_below_precursor_intensity_dominance_charge_state_calculation
below precursor intensity dominance charge state calculation: Infers charge state as single or ambigu...
Definition: cv.hpp:2857
MS_PeptideShaker_protein_group_confidence
PeptideShaker protein group confidence: The probability based PeptideShaker protein group confidence...
Definition: cv.hpp:7705
MS_SCIEX_software
SCIEX software: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2587
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex(4) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:11689
MS_date___time_search_performed_OBSOLETE
date / time search performed: OBSOLETE: use attribute in mzIdentML instead. Date and time of the actu...
Definition: cv.hpp:3445
MS_TOPP_SpectraFilterSqrtMower
TOPP SpectraFilterSqrtMower: Applies a filter to peak spectra after intensity scaling to the square r...
Definition: cv.hpp:6721
MS_Mascot_Distiller
Mascot Distiller: Mascot Distiller.
Definition: cv.hpp:4711
MS_ProteinExtractor
ProteinExtractor: An algorithm for protein determination/assembly integrated into Bruker&#39;s ProteinSca...
Definition: cv.hpp:4708
UNIMOD_glucosone
glucosone: Condensation product of glucosone.
Definition: cv.hpp:10303
MS_magnetic_field_strength
magnetic field strength: A property of space that produces a force on a charged particle equal to qv ...
Definition: cv.hpp:175
MS_gas_chromatography_separation
gas chromatography separation: Gas chromatography (GC) is a separation technique in which the mobile ...
Definition: cv.hpp:7105
MS_linked_scan_OBSOLETE
linked scan: A scan in an instrument with two or more m/z analysers or in a sector mass spectrometer ...
Definition: cv.hpp:1405
MS_database_UniProtKB_TrEMBL
database UniProtKB/TrEMBL: The name of the UniProtKB/TrEMBL database.
Definition: cv.hpp:6472
MS_embl_em
embl em: EMBL entry format.
Definition: cv.hpp:4306
MS_retention_time_window_upper_offset
retention time window upper offset: The extent of the retention time window in time units above the t...
Definition: cv.hpp:3307
MS_constant_neutral_gain_scan_OBSOLETE
constant neutral gain scan: Spectrum of all precursor ions that undergo a selected m/z increment...
Definition: cv.hpp:1381
UO_millisecond
millisecond: A time unit which is equal to one thousandth of a second or 10^[-3] s.
Definition: cv.hpp:12580
MS_time_of_flight_mass_spectrometer_OBSOLETE
time-of-flight mass spectrometer: An instrument that separates ions by m/z in a field-free region aft...
Definition: cv.hpp:1267
UNIMOD_Arg__Phe
Arg->Phe: Arg->Phe substitution.
Definition: cv.hpp:10897
UNIMOD_dHex_2_Hex_2_HexA_1_
dHex(2)Hex(2)HexA(1): DHex(2) Hex(2) HexA.
Definition: cv.hpp:11893
UNIMOD_Gly__Tyr
Gly->Tyr: Gly->Tyr substitution.
Definition: cv.hpp:10651
MS_esquireControl
esquireControl: Bruker software for data acquisition.
Definition: cv.hpp:2680
UO_milligram_per_liter
milligram per liter: A mass unit density which is equal to mass of an object in milligrams divided by...
Definition: cv.hpp:13309
MS_mzidLib_InsertMetaDataFromFasta
mzidLib:InsertMetaDataFromFasta: A tool for adding additional meta data from a FASTA file to DBSequen...
Definition: cv.hpp:7030
MS_retention_time_normalization_standard
retention time normalization standard: A standard providing the retention times at which a set of ref...
Definition: cv.hpp:3256
MS_ProteinProspector_expectation_value
ProteinProspector:expectation value: The ProteinProspector result &#39;Expectation value&#39;.
Definition: cv.hpp:6424
MS_spin_coating_MALDI_sample_preparation
spin coating MALDI sample preparation: Spin coating MALDI sample preparation method.
Definition: cv.hpp:6247
UNIMOD_GIST_Quat
GIST-Quat: Quaternary amine labeling reagent light form (N-term & K).
Definition: cv.hpp:8569
MS_ICPL_reagent_6
ICPL reagent 6: The name of the sample labelled with the ICPL reagent 6.
Definition: cv.hpp:8122
UNIMOD_Ala__Val
Ala->Val: Ala->Val substitution.
Definition: cv.hpp:9472
UNIMOD_Ser__Ala
Ser->Ala: Ser->Ala substitution.
Definition: cv.hpp:9754
UNIMOD_His__Glu
His->Glu: His->Glu substitution.
Definition: cv.hpp:10660
MS_Comet_total_ions
Comet:total ions: The Comet result &#39;Total Ions&#39;.
Definition: cv.hpp:7066
MS_TOPP_SpectraFilterThresholdMower
TOPP SpectraFilterThresholdMower: Applies a filter of peaks below a given threshold to peak spectra...
Definition: cv.hpp:6724
MS_ultrafleXtreme
ultrafleXtreme: Bruker Daltonics&#39; ultrafleXtreme: MALDI TOF.
Definition: cv.hpp:4879
MS_Sequence_database_filter_types
Sequence database filter types: Filter types which are used to filter a sequence database.
Definition: cv.hpp:4780
MS_ProteomeDiscoverer_max_peptide_length
ProteomeDiscoverer:max peptide length: Maximum peptide length.
Definition: cv.hpp:7261
MS_Mascot_UseUnigeneClustering
Mascot:UseUnigeneClustering: If true, then the search results are against a nucleic acid database and...
Definition: cv.hpp:4222
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexA HexNAc Sulf.
Definition: cv.hpp:12112
MS_MaxQuant_Phospho__STY__Probabilities_threshold
MaxQuant:Phospho (STY) Probabilities threshold: Threshold for MaxQuant:Phospho (STY) Probabilities...
Definition: cv.hpp:7993
MS_Byonic
Byonic: Byonic search engine from Protein Metrics.
Definition: cv.hpp:7072
MS_Skyline
Skyline: Software used to predict, select, and optimize transitions as well as analyze the results of...
Definition: cv.hpp:3322
MS_param__b_ion_NH3_DEPRECATED
param: b ion-NH3 DEPRECATED: Ion b-NH3 parameter information, type of product: b ion with lost ammoni...
Definition: cv.hpp:3754
UNIMOD_QQQTGG
QQQTGG: SUMOylation by SUMO-2/3.
Definition: cv.hpp:10090
MS_OMEGA
OMEGA: IonSpec OMEGA MS.
Definition: cv.hpp:751
MS_ProteomeDiscoverer_Mascot_Weight_of_C_Ions
ProteomeDiscoverer:Mascot:Weight of C Ions: Determines if to use C ions for spectrum matching...
Definition: cv.hpp:5491
MS_ProteomeDiscoverer_Use_Neutral_Loss_b_Ions
ProteomeDiscoverer:Use Neutral Loss b Ions: Determines whether b ions with neutral loss are used for ...
Definition: cv.hpp:5311
MS_PerSeptive_PKS_format
PerSeptive PKS format: PerSeptive peak list file format.
Definition: cv.hpp:4012
UNIMOD_Label_13C_5_
Label:13C(5): 13C(5) Silac label.
Definition: cv.hpp:9991
MS_Profound_ClusterRank
Profound:ClusterRank: The Profound cluster rank.
Definition: cv.hpp:4747
MS_CLINPROT_micro
CLINPROT micro: Bruker CLINPROT micro software.
Definition: cv.hpp:2644
UO_kibibyte
kibibyte: An information unit which is equal to 1024 B.
Definition: cv.hpp:13225
MS_counts_per_second
counts per second: The number of counted events observed per second in one or a group of elements of ...
Definition: cv.hpp:2989
UO_poise
poise: A viscosity unit which is equal to one dyne second per square centimeter.
Definition: cv.hpp:13264
MS_MS1_label_based_analysis
MS1 label-based analysis: MS1 label-based analysis.
Definition: cv.hpp:6340
MS_MS1_feature_maximum_intensity
MS1 feature maximum intensity: Maximum intensity of MS1 feature.
Definition: cv.hpp:5785
MS_PTM_localization_PSM_level_statistic
PTM localization PSM-level statistic: Statistic to convey the confidence of the localization of an am...
Definition: cv.hpp:6169
UO_power_unit
power unit: A unit which is a standard measure power or the rate of doing work.
Definition: cv.hpp:12835
MS_ProteomeDiscoverer_SEQUEST_Weight_of_y_Ions
ProteomeDiscoverer:SEQUEST:Weight of y Ions: Uses y ions for spectrum matching with this relative fac...
Definition: cv.hpp:5341
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_2_
dHex(1)Hex(2)HexA(1)HexNAc(2): DHex Hex(2) HexA HexNAc(2).
Definition: cv.hpp:12025
UO_volt_hour
volt-hour: A magnetic flux unit which is equal to 3600 Wb.
Definition: cv.hpp:13177
MS______KR_____P_
(?<=[KR])(?!P): Regular expression for Trypsin.
Definition: cv.hpp:3835
MS_ACQUITY_UPLC_I_Class
ACQUITY UPLC I-Class: Waters LC-system ACQUITY UPLC I-Class.
Definition: cv.hpp:5548
MS_mzML_format
mzML format: Proteomics Standards Inititative mzML file format.
Definition: cv.hpp:2251
UNIMOD_Gly
Gly: Addition of Glycine.
Definition: cv.hpp:11098
MS_sophisticated_numerical_annotation_procedure
sophisticated numerical annotation procedure: It searches for known patterns in the measured spectrum...
Definition: cv.hpp:6265
MS_area_normalization
area normalization: Normalization of areas below the curves.
Definition: cv.hpp:6271
MS_ion_series_considered_in_search
ion series considered in search: The description of the ion fragment series (including charges and ne...
Definition: cv.hpp:7711
UNIMOD_dHex_1_Hex_5_HexNAc_4_NeuAc_2_
dHex(1)Hex(5)HexNAc(4)NeuAc(2): DHex Hex(5) HexNAc(4) NeuAc(2).
Definition: cv.hpp:11395
UNIMOD_Hex_6_HexNAc_4_Me_3_Pent_1_
Hex(6)HexNAc(4)Me(3)Pent(1): Hex(6) HexNAc(4) Me(3) Pent.
Definition: cv.hpp:11800
UO_curie
curie: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radioacti...
Definition: cv.hpp:12892
UNIMOD_Label_13C_6__Acetyl
Label:13C(6)+Acetyl: Acetyl 13C(6) Silac label.
Definition: cv.hpp:10045
MS_LTQ_XL
LTQ XL: Thermo Scientific LTQ XL MS.
Definition: cv.hpp:3106
UNIMOD_IGBP_13C_2_
IGBP:13C(2): Heavy IDBEST tag for quantitation.
Definition: cv.hpp:9361
UNIMOD_cysTMT
cysTMT: Native cysteine-reactive Tandem Mass Tag®.
Definition: cv.hpp:10306
MS_technical_replicate
technical replicate: The study variable is &#39;technical replicate&#39;. The string value denotes the catego...
Definition: cv.hpp:5680
MS_OMSSA_pvalue
OMSSA:pvalue: OMSSA p-value.
Definition: cv.hpp:4237
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1): DHex Hex HexNAc(2) NeuAc.
Definition: cv.hpp:11995
UNIMOD_Dibromo
Dibromo: Dibromo.
Definition: cv.hpp:9436
UNIMOD_dHex_1_Hex_3_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexNAc(3)Sulf(1): DHex Hex(3) HexNAc(3) Sulf.
Definition: cv.hpp:12169
UNIMOD_Trp__Xle
Trp->Xle: Trp->Leu/Ile substitution.
Definition: cv.hpp:9841
MS_ProteinExtractor_SequestPeptideScoreThreshold
ProteinExtractor:SequestPeptideScoreThreshold: Only peptides with scores higher than that threshold a...
Definition: cv.hpp:4549
MS_XPRESS
XPRESS: A program in the TPP that calculates PSM-level abundances based on 2-channel isotope-labelled...
Definition: cv.hpp:7162
MS_mathieu_stability_diagram_OBSOLETE
mathieu stability diagram: A graphical representation expressed in terms of reduced coordinates that ...
Definition: cv.hpp:1357
UNIMOD_Hex_3_HexNAc_7_Sulf_1_
Hex(3)HexNAc(7)Sulf(1): Hex(3) HexNAc(7) Sulf.
Definition: cv.hpp:11818
MS_reference_ion_OBSOLETE
reference ion: A stable ion whose structure is known with certainty. These ions are usually formed by...
Definition: cv.hpp:1552
UNIMOD_Lys__CamCys
Lys->CamCys: Lys->Cys substitution and carbamidomethylation.
Definition: cv.hpp:10147
MS_gaseous_sample_state
gaseous sample state: State if the sample is in gaseous form.
Definition: cv.hpp:259
UNIMOD_Carboxyethylpyrrole
Carboxyethylpyrrole: Carboxyethylpyrrole.
Definition: cv.hpp:12478
UNIMOD_EDT_maleimide_PEO_biotin
EDT-maleimide-PEO-biotin: EDT-maleimide-PEO-biotin.
Definition: cv.hpp:8602
MS_protein_group_level_global_FNR
protein group-level global FNR: Estimation of the global false negative rate of protein groups...
Definition: cv.hpp:7672
MS_Bruker_U2_nativeID_format
Bruker U2 nativeID format: Native format defined by declaration=xsd:nonNegativeInteger collection=xsd...
Definition: cv.hpp:3016
MS_Trypsin
Trypsin: Enzyme trypsin.
Definition: cv.hpp:4027
MS_MSDK
MSDK: Mass Spectrometry Development Kit (MSDK) is a Java library of algorithms for processing of mass...
Definition: cv.hpp:8233
MS_fragment_ion_m_z
fragment ion m/z (product ion m/z): The m/z of the product ion.
Definition: cv.hpp:3952
UNIMOD_His__Asn
His->Asn: His->Asn substitution.
Definition: cv.hpp:9046
UNIMOD_Methylpyrroline
Methylpyrroline: 4-methyl-delta-1-pyrroline-5-carboxyl.
Definition: cv.hpp:9262
MS_frag__TMT_ETD_reporter_ion
frag: TMT ETD reporter ion: Standard reporter ion for TMT with ETD fragmentation. The value slot hold...
Definition: cv.hpp:8314
MS_ProteoWizard_msconvert
ProteoWizard msconvert: Converts, filters, and processes mass spectrometry data in variety of formats...
Definition: cv.hpp:6904
UNIMOD_Glu__Phe
Glu->Phe: Glu->Phe substitution.
Definition: cv.hpp:10552
MS_molecular_ion_OBSOLETE
molecular ion: An ion formed by the removal of one or more electrons to form a positive ion or the ad...
Definition: cv.hpp:1528
MS_Channeltron_Detector
Channeltron Detector (channeltron): A horn-shaped (or cone-shaped) continuous dynode particle multipl...
Definition: cv.hpp:481
UNIMOD_Cys__Pro
Cys->Pro: Cys->Pro substitution.
Definition: cv.hpp:10504
UNIMOD_SulfanilicAcid_13C_6_
SulfanilicAcid:13C(6): Heavy Sulfanilic Acid (SA) C13.
Definition: cv.hpp:8920
UNIMOD_Hex_3_HexNAc_2_
Hex(3)HexNAc(2): Hex3HexNAc2.
Definition: cv.hpp:8752
MS_PTM_localization_score_threshold
PTM localization score threshold: Threshold for PTM site location score.
Definition: cv.hpp:7960
MS_search_database_details
search database details: Details about the database searched.
Definition: cv.hpp:3379
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex Hex(3) HexA HexNAc(3) Sulf.
Definition: cv.hpp:12262
MS_modulation_time
modulation time: The duration of a complete cycle of modulation in a comprehensive two-dimensional se...
Definition: cv.hpp:6415
MS_charge_transfer_reaction_OBSOLETE
charge transfer reaction: The reaction of an ion with a neutral species in which some or all of the c...
Definition: cv.hpp:1672
UNIMOD_Ser__Phe
Ser->Phe: Ser->Phe substitution.
Definition: cv.hpp:9751
UNIMOD_methylsulfonylethyl
methylsulfonylethyl: Reaction with methyl vinyl sulfone.
Definition: cv.hpp:11314
MS_iTRAQ_reagent_117
iTRAQ reagent 117: The name of the sample labelled with the iTRAQ reagent 117.
Definition: cv.hpp:8176
UO_milliliter
milliliter: A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter.
Definition: cv.hpp:12790
MS_IdentityE_XML_format
IdentityE XML format: Source file for this mzIdentML was in Waters IdentityE XML format.
Definition: cv.hpp:4936
MS_iTRAQ_reagent
iTRAQ reagent: Isobaric tag for relative and absolute quantitation reagent.
Definition: cv.hpp:8161
MS_attenuation
attenuation: Describes the reduction of the intensity of the laser beam energy.
Definition: cv.hpp:3088
UNIMOD_Met__Glu
Met->Glu: Met->Glu substitution.
Definition: cv.hpp:10747
UNIMOD_Dimethyl_2H_6_13C_2_
Dimethyl:2H(6)13C(2): Dimethylation.
Definition: cv.hpp:9016
UNIMOD_GIST_Quat_2H_6_
GIST-Quat:2H(6): Quaternary amine labeling reagent heavy form (+6amu), N-term & K.
Definition: cv.hpp:8575
MS_database_IPI_rat
database IPI_rat: International Protein Index database for Rattus norvegicus sequences.
Definition: cv.hpp:4108
MS_ProteomeDiscoverer_Non_Fragment_Filter_Mass_Window_Offset
ProteomeDiscoverer:Non-Fragment Filter:Mass Window Offset: Specifies the size of the mass-to-charge r...
Definition: cv.hpp:5122
MS_mass_scan_OBSOLETE
mass scan: A variation of instrument where a selected mass is scanned.
Definition: cv.hpp:424
MS_param__b_ion_H3PO4_DEPRECATED
param: b ion-H3PO4 DEPRECATED: Ion b-H3PO4: b ion with lost phosphoric acid.
Definition: cv.hpp:7642
MS_false_localization_rate
false localization rate: Estimation of the false localization rate for modification site assignment...
Definition: cv.hpp:7432
MS_database_IPI_chicken
database IPI_chicken: International Protein Index database for Gallus gallus sequences.
Definition: cv.hpp:4114
UNIMOD_NO_SMX_SMCT
NO_SMX_SMCT: Nitroso Sulfamethoxazole semimercaptal thiol adduct.
Definition: cv.hpp:9949
UO_dots_per_inch
dots per inch: A spatial resolution unit which is a standard measure of the printing resolution...
Definition: cv.hpp:13210
MS_theoretical_mass
theoretical mass: The theoretical mass of the molecule (e.g. the peptide sequence and its modificatio...
Definition: cv.hpp:3658
MS_electron_induced_excitation_in_organics_OBSOLETE
electron-induced excitation in organics: The reaction of an ion with an electron in which the transla...
Definition: cv.hpp:1054
MS_ProteomeDiscoverer_Scan_Type_OBSOLETE
ProteomeDiscoverer:Scan Type: Scan type for the precursor ion (full, Single Ion Monitoring (SIM)...
Definition: cv.hpp:5098
MS_SEQUEST_consensus_score
SEQUEST:consensus score: The SEQUEST result &#39;Consensus Score&#39;.
Definition: cv.hpp:3796
UNIMOD_dHex_1_Hex_3_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexNAc(2)Sulf(1): DHex Hex(3) HexNAc(2) Sulf.
Definition: cv.hpp:12400
MS_splash_key
splash key: The Splash, is an unique identifier for Spectra, as the InChI Key is an unique identifier...
Definition: cv.hpp:8092
MS_ion_chemical_type_OBSOLETE
ion chemical type: Ion Type.
Definition: cv.hpp:1978
MS_even_electron_ion_OBSOLETE
even-electron ion: An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1048
MS_Clostripain
Clostripain (Arg-C): Endoproteinase Arg-C.
Definition: cv.hpp:4162
MS_transmission_quadrupole_mass_spectrometer_OBSOLETE
transmission quadrupole mass spectrometer: A mass spectrometer that consists of four parallel rods wh...
Definition: cv.hpp:1318
MS_PAnalyzer_ambiguous_group_member
PAnalyzer:ambiguous group member: A protein sharing at least one peptide not matched to either conclu...
Definition: cv.hpp:6937
MS_selected_ion_current_chromatogram
selected ion current chromatogram: Chromatogram created by creating an array of the measurements of a...
Definition: cv.hpp:2398
MS_consecutive_reaction_monitoring_OBSOLETE_1000327
consecutive reaction monitoring: A type of MS2 experiments with three or more stages of m/z separatio...
Definition: cv.hpp:1399
UNIMOD_ICAT_C
ICAT-C: Applied Biosystems cleavable ICAT(TM) light.
Definition: cv.hpp:8614
MS_Paragon__FDR_analysis
Paragon: FDR analysis: The Paragon method setting that controls whether FDR analysis is conducted...
Definition: cv.hpp:7573
MS_DeBunker
DeBunker: DeBunker software.
Definition: cv.hpp:6184
MS_mean_of_spectra
mean of spectra: Spectra is combined by calculating the mean of the spectra.
Definition: cv.hpp:2182
MS_Cliquid
Cliquid: SCIEX Cliquid software for data analysis and quantitation.
Definition: cv.hpp:2533
UNIMOD_Phe__Asn
Phe->Asn: Phe->Asn substitution.
Definition: cv.hpp:10606
UNIMOD_Asp__His
Asp->His: Asp->His substitution.
Definition: cv.hpp:9496
MS_TSQ_Quantiva
TSQ Quantiva: Thermo Scientific TSQ Quantiva MS.
Definition: cv.hpp:7546
MS_Ascore_threshold
Ascore threshold: Threshold for Ascore PTM site location score.
Definition: cv.hpp:7963
MS_TOPP_CompNovo
TOPP CompNovo: Performs a peptide/protein identification with the CompNovo engine.
Definition: cv.hpp:6823
MS_constant_neutral_gain_spectrum
constant neutral gain spectrum: A spectrum formed of all product ions that have been produced by gain...
Definition: cv.hpp:1387
UNIMOD_Dimethyl_2H_4_
Dimethyl:2H(4): DiMethyl-CHD2.
Definition: cv.hpp:8812
MS_TOPP_IDFilter
TOPP IDFilter: Filters results from protein or peptide identification engines based on different crit...
Definition: cv.hpp:6859
MS_ProteomeDiscoverer_Reference_Database_OBSOLETE
ProteomeDiscoverer:Reference Database: Full path database name.
Definition: cv.hpp:5461
UO_mebibyte
mebibyte: An information unit which is equal to 1024 KiB.
Definition: cv.hpp:13228
MS_ProteomeDiscoverer_Mascot_Protein_Relevance_Factor
ProteomeDiscoverer:Mascot:Protein Relevance Factor: Specifies a factor that is used in calculating a ...
Definition: cv.hpp:5242
MS_molecules_per_cell
molecules per cell: The absolute abundance of protein in a cell.
Definition: cv.hpp:7831
MS_PSM_level_statistical_threshold
PSM-level statistical threshold: Estimated statistical threshold at PSM-level.
Definition: cv.hpp:7741
MS_Analyst
Analyst: SCIEX or Applied Biosystems|MDS SCIEX software for data acquisition.
Definition: cv.hpp:2110
UNIMOD_Tyr__Glu
Tyr->Glu: Tyr->Glu substitution.
Definition: cv.hpp:11026
UNIMOD_dHex_3_HexNAc_3_Kdn_1_
dHex(3)HexNAc(3)Kdn(1): DHex(3) HexNAc(3) Kdn.
Definition: cv.hpp:12151
MS_instrument_additional_description_OBSOLETE
instrument additional description: Additional terms to describe the instrument as outlined in the mas...
Definition: cv.hpp:1801
MS_Byonic_DeltaMod_Score
Byonic:DeltaMod Score: The drop in Byonic score from the top-scoring peptide to the next peptide diff...
Definition: cv.hpp:7081
MS_two_dimensional_liquid_chromatography_with_discrete_modulation_time_steps
two-dimensional liquid chromatography with discrete modulation time steps: Two-dimensional liquid chr...
Definition: cv.hpp:6556
MS_collision_gas
collision gas: An inert gas used for collisional excitation. The term target gas is not recommended...
Definition: cv.hpp:1678
MS_modification_position_score
modification position score: Modification position score.
Definition: cv.hpp:7810
MS_LCQ_Deca_XP_Plus
LCQ Deca XP Plus: ThermoFinnigan LCQ Deca XP Plus MS.
Definition: cv.hpp:715
MS_param__immonium_ion
param: immonium ion: Parameter information, type of product: immonium ion.
Definition: cv.hpp:4051
UO_exposure_unit
exposure unit: A unit which is a standard measure of the quantity that expresses the ability of radia...
Definition: cv.hpp:12886
MS_native_source_path
native source path: The original source path used for directory-based sources.
Definition: cv.hpp:6427
MS_quantification_object_attribute
quantification object attribute: Attributes describing the details of an object relevant for reportin...
Definition: cv.hpp:5674
UO_milliunits_per_milliliter
milliunits per milliliter: A unit per milliliter unit which is equal to one thousandth of a unit of a...
Definition: cv.hpp:13327
MS_Bruker_FID_nativeID_format
Bruker FID nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2839
MS_ProteoWizard_software
ProteoWizard software: ProteoWizard software for data processing and analysis. Primarily developed by...
Definition: cv.hpp:2353
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_
dHex(1)Hex(3)HexA(1)HexNAc(2): DHex Hex(3) HexA HexNAc(2).
Definition: cv.hpp:12103
MS_Mascot_ProteinGrouping
Mascot:ProteinGrouping: Strategy used by Mascot to group proteins with same peptide matches (one of &#39;...
Definition: cv.hpp:5533
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_2_
dHex(1)Hex(3)HexNAc(4)Pent(2): DHex Hex(3) HexNAc(4) Pent(2).
Definition: cv.hpp:11659
MS_FileConverter
FileConverter: Converts between different MS file formats.
Definition: cv.hpp:2785
UNIMOD_Phe__Gly
Phe->Gly: Phe->Gly substitution.
Definition: cv.hpp:10594
UNIMOD_Met_loss_Acetyl
Met-loss+Acetyl: Removal of initiator methionine from protein N-terminus, then acetylation of the new...
Definition: cv.hpp:9979
MS_microelectrospray
microelectrospray: Electrospray ionization at a solvent flow rate of 300-800 nL/min where the flow is...
Definition: cv.hpp:1609
MS_TOPP_ProteinQuantifier
TOPP ProteinQuantifier: Computes protein abundances from annotated feature/consensus maps...
Definition: cv.hpp:6802
UNIMOD_O_Dimethylphosphate
O-Dimethylphosphate: O-Dimethylphosphorylation.
Definition: cv.hpp:9892
MS_travelling_wave_ion_mobility_mass_spectrometer_OBSOLETE
travelling wave ion mobility mass spectrometer: An ion mobility mass spectrometry technique based on ...
Definition: cv.hpp:5644
UNIMOD_MTSL
MTSL: Cys modification by (1-oxyl-2,2,5,5-tetramethyl-3-pyrroline-3-methyl)methanesulfonate (MTSL)...
Definition: cv.hpp:10168
UNIMOD_ICPL_2H_4_
ICPL:2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, medium form.
Definition: cv.hpp:9871
MS_group_member_with_undefined_relationship_OR_ortholog_protein
group member with undefined relationship OR ortholog protein: TO ENDETAIL: a really generic relations...
Definition: cv.hpp:5035
MS_percolator_PEP
percolator:PEP: Posterior error probability.
Definition: cv.hpp:4726
UNIMOD_Gly__Cys
Gly->Cys: Gly->Cys substitution.
Definition: cv.hpp:9565
UNIMOD_Argbiotinhydrazide
Argbiotinhydrazide: Oxidized Arginine biotinylated with biotin hydrazide.
Definition: cv.hpp:9037
MS_taxonomy_nomenclature_OBSOLETE
taxonomy nomenclature: OBSOLETE: The system used to indicate taxonomy. There should be an enumerated ...
Definition: cv.hpp:3577
MS_search_statistics
search statistics: The details of the actual run of the search.
Definition: cv.hpp:3847
MS_pre_ionization_state_OBSOLETE
pre-ionization state: An electronic state capable of undergoing auto-Ionization.
Definition: cv.hpp:1624
UNIMOD_dHex_1_Hex_3_HexNAc_4_Sulf_1_
dHex(1)Hex(3)HexNAc(4)Sulf(1): DHex Hex(3) HexNAc(4) Sulf.
Definition: cv.hpp:11572
MS_quantitation_analysis_summary
quantitation analysis summary: The overall workflow of this quantitation report.
Definition: cv.hpp:5755
UNIMOD_Gly__Asn
Gly->Asn: Gly->Asn substitution.
Definition: cv.hpp:10639
MS_Phenyx_AC_Score
Phenyx:AC Score: The minimal protein score required for a protein database entry to be displayed in t...
Definition: cv.hpp:4408
MS_Percolator_input_parameter
Percolator input parameter: Search engine input parameters specific to Percolator.
Definition: cv.hpp:6610
UNIMOD_dHex_1_Hex_4_HexNAc_2_
dHex(1)Hex(4)HexNAc(2): DHex Hex(4) HexNAc(2).
Definition: cv.hpp:12406
UNIMOD_PhosphoUridine
PhosphoUridine: Uridine phosphodiester.
Definition: cv.hpp:9217
MS_database_IPI_human
database IPI_human: International Protein Index database for Homo sapiens sequences.
Definition: cv.hpp:3733
UNIMOD_Met__Hsl
Met->Hsl: Homoserine lactone.
Definition: cv.hpp:8452
MS_mean_drift_time_array
mean drift time array: Array of drift times, averaged from a matrix of binned m/z and drift time valu...
Definition: cv.hpp:7723
MS_ProteomeDiscoverer_Mascot_Weight_of_Z_Ions
ProteomeDiscoverer:Mascot:Weight of Z Ions: Determines if to use z ions for spectrum matching...
Definition: cv.hpp:5509
UNIMOD_Asn__Gln
Asn->Gln: Asn->Gln substitution.
Definition: cv.hpp:10798
UNIMOD_Hex_1_HexNAc_1_NeuAc_3_
Hex(1)HexNAc(1)NeuAc(3): Hex HexNAc NeuAc(3).
Definition: cv.hpp:12115
MS_MyriMatch_mzFidelity
MyriMatch:mzFidelity: The negative natural log probability that predicted peaks match to experimental...
Definition: cv.hpp:5020
MS_constant_neutral_mass_loss_spectrum
constant neutral mass loss spectrum (constant neutral loss spectrum): A spectrum formed of all produc...
Definition: cv.hpp:1396
UNIMOD_Xlink_DSS
Xlink:DSS: Water-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.
Definition: cv.hpp:10390
MS_Pepitome
Pepitome: Tabb Lab software for spectral library searches on tandem mass spectra. ...
Definition: cv.hpp:5008
MS_retention_time
retention time: A time interval from the start of chromatography when an analyte exits a chromatograp...
Definition: cv.hpp:3235
MS_multiple_stage_mass_spectrometry_OBSOLETE
multiple stage mass spectrometry: Multiple stages of precursor ion m/z selection followed by product ...
Definition: cv.hpp:1165
UNIMOD_Iodo
Iodo: Iodination.
Definition: cv.hpp:8671
MS_data_processing_software
data processing software: Data processing software.
Definition: cv.hpp:4612
MS_autodetachment
autodetachment: The formation of a neutral when a negative ion in a discrete state with an energy gre...
Definition: cv.hpp:1570
UNIMOD_Furan
Furan: Chemical modification of the iodinated sites of thyroglobulin by Suzuki reaction.
Definition: cv.hpp:11122
UNIMOD_Hex_2_HexNAc_2_Pent_1_
Hex(2)HexNAc(2)Pent(1): Hex2HexNAc2Pent1.
Definition: cv.hpp:8746
MS_highest_observed_wavelength
highest observed wavelength: Highest wavelength observed in an EMR spectrum.
Definition: cv.hpp:2365
MS_EThcD
EThcD (Electron-Transfer/Higher-Energy Collision Dissociation (EThcD)): A dissociation process combin...
Definition: cv.hpp:8191
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge4: Standard medium confidence XCorr para...
Definition: cv.hpp:5389
MS_TOPP_SpectraFilterNormalizer
TOPP SpectraFilterNormalizer: Applies a TIC/maximal intensity normalization to peak spectra...
Definition: cv.hpp:6712
UO_coulomb
coulomb: An electrical charge unit which is equal to the amount of charge transferred by a current of...
Definition: cv.hpp:13150
MS_OMSSA_evalue
OMSSA:evalue: OMSSA E-value.
Definition: cv.hpp:4234
UNIMOD_Trp__His
Trp->His: Trp->His substitution.
Definition: cv.hpp:10996
MS_Xevo_G2_S_QTof
Xevo G2-S QTof: Waters oa-ToF based Xevo G2-S QTof.
Definition: cv.hpp:7117
MS_IsoProbe_T
IsoProbe T: Waters IsoProbe T MS.
Definition: cv.hpp:706
MS_database_source
database source: The organisation, project or laboratory from where the database is obtained (UniProt...
Definition: cv.hpp:3382
UNIMOD_Ser__Tyr
Ser->Tyr: Ser->Tyr substitution.
Definition: cv.hpp:9769
UNIMOD_Glutathione
Glutathione: Glutathione disulfide.
Definition: cv.hpp:8557
MS_image_current_detector
image current detector (inductive detector): Inductive detector.
Definition: cv.hpp:2389
MS_soft_ionization
soft ionization: The formation of gas-phase ions without extensive fragmentation. ...
Definition: cv.hpp:1630
UO_pascal_second
pascal second: A viscosity unit which is equal to one pascale per second.
Definition: cv.hpp:13261
UO_molar_mass_unit
molar mass unit: A unit which is a standard measure of the mass of a homogeneous substance containing...
Definition: cv.hpp:12661
MS_prot_FDR_threshold
prot:FDR threshold: False-discovery rate threshold for proteins.
Definition: cv.hpp:4582
UNIMOD_Arg__GluSA
Arg->GluSA: Arginine oxidation to glutamic semialdehyde.
Definition: cv.hpp:9040
UO_cubic_meter_per_kilogram
cubic meter per kilogram: A specific volume unit which is equal to one cubic meter volume occupied by...
Definition: cv.hpp:12775
MS_source_temperature
source temperature: The temperature of the source of a mass spectrometer.
Definition: cv.hpp:6412
UNIMOD_N_dimethylphosphate
N-dimethylphosphate: N-dimethylphosphate.
Definition: cv.hpp:11281
UNIMOD_NEMsulfur
NEMsulfur: N-ethylmaleimideSulfur.
Definition: cv.hpp:11227
UNIMOD_Label_13C_5_15N_1_
Label:13C(5)15N(1): 13C(5) 15N(1) Silac label.
Definition: cv.hpp:8881
MS_non_standard_data_array
non-standard data array: A data array that contains data not covered by any other term in this group...
Definition: cv.hpp:2893
UNIMOD_dHex
dHex: Fucose.
Definition: cv.hpp:8944
MS_emPAI_value
emPAI value: The emPAI value of protein abundance, produced from the emPAI algorithm.
Definition: cv.hpp:5971
UNIMOD_Hex_1_HexNAc_3_NeuAc_2_
Hex(1)HexNAc(3)NeuAc(2): Hex HexNAc(3) NeuAc(2).
Definition: cv.hpp:12181
MS_ProteinProphet
ProteinProphet: A program in the TPP that calculates protein-level probabilities based on input PSM o...
Definition: cv.hpp:7159
MS_AP_MALDI
AP MALDI (atmospheric pressure matrix-assisted laser desorption ionization): Matrix-assisted laser de...
Definition: cv.hpp:979
MS_scan_start_time
scan start time: The time that an analyzer started a scan, relative to the start of the MS run...
Definition: cv.hpp:148
MS_ReAdW
ReAdW: A software program for converting Thermo Finnigan RAW file format to mzXML or mzML...
Definition: cv.hpp:2080
UNIMOD_Glu
Glu: Monoglutamyl.
Definition: cv.hpp:9301
MS_pepXML_format
pepXML format: Source file for this mzIdentML was in a pepXML file format.
Definition: cv.hpp:4504
UNIMOD_Diironsubcluster
Diironsubcluster: Hydrogenase diiron subcluster.
Definition: cv.hpp:9274
MS_cleavage_agent_name
cleavage agent name: The name of the cleavage agent.
Definition: cv.hpp:3469
UNIMOD_Hex_2_HexNAc_1_NeuGc_4_
Hex(2)HexNAc(1)NeuGc(4): Hex(2) HexNAc NeuGc(4).
Definition: cv.hpp:12340
UNIMOD_Octanoyl
Octanoyl: Octanoyl.
Definition: cv.hpp:9241
MS_total_XIC_area
total XIC area: Summed area of all the extracted ion chromatogram for the peptide (e...
Definition: cv.hpp:7528
MS_nucleic_acid_base_modification
nucleic acid base modification: Nucleic acid base modification (substitution, insertion or deletion)...
Definition: cv.hpp:6370
MS_Paragon__cysteine_alkylation
Paragon: cysteine alkylation: The Paragon method setting indicating the actual cysteine alkylation ag...
Definition: cv.hpp:7561
MS_nth_generation_product_ion_scan_OBSOLETE
nth generation product ion scan: The specific scan functions or processes that record the appropriate...
Definition: cv.hpp:1432
UNIMOD_Trimethyl_13C_3_2H_9_
Trimethyl:13C(3)2H(9): 3-fold methylation with fully labelled methyl groups.
Definition: cv.hpp:11404
UNIMOD_Xle__Asp
Xle->Asp: Leu/Ile->Asp substitution.
Definition: cv.hpp:10693
UNIMOD_AHA_SS_CAM
AHA-SS_CAM: Carbamidomethylated form of reductively cleaved tag coupled to azidohomoalanine.
Definition: cv.hpp:11062
UNIMOD_Asn__Ala
Asn->Ala: Asn->Ala substitution.
Definition: cv.hpp:10777
MS_PEAKS_inChorusProteinScore
PEAKS:inChorusProteinScore: The PEAKS inChorus protein score.
Definition: cv.hpp:7639
MS_SEQUEST_input_parameter
SEQUEST input parameter: Search engine input parameters specific to SEQUEST.
Definition: cv.hpp:6580
MS_ProteinScape_SearchEventId
ProteinScape:SearchEventId: The SearchEventId of the SearchEvent in the ProteinScape database...
Definition: cv.hpp:4735
MS_MS1_label_based_raw_feature_quantitation
MS1 label-based raw feature quantitation: MS1 label-based raw feature quantitation.
Definition: cv.hpp:6277
MS_No_fixed_modifications_searched
No fixed modifications searched: No fixed modifications are included as a parameter for the search...
Definition: cv.hpp:7651
MS_collisionally_activated_dissociation
collisionally activated dissociation (collision-induced dissociation): The dissociation of an ion aft...
Definition: cv.hpp:595
UNIMOD_DTT_C
DTT_C: Dithiothreitol (DTT) on Cys.
Definition: cv.hpp:9925
UNIMOD_dHex_4_Hex_1_HexNAc_2_Kdn_1_
dHex(4)Hex(1)HexNAc(2)Kdn(1): DHex(4) Hex HexNAc(2) Kdn.
Definition: cv.hpp:12211
MS_TOPP_FeatureLinkerUnlabeled
TOPP FeatureLinkerUnlabeled: Groups corresponding features from multiple maps.
Definition: cv.hpp:6817
MS_feature_list_attribute
feature list attribute: Attribute describing a feature list.
Definition: cv.hpp:5731
MS_Mascot_MGF_format
Mascot MGF format: Mascot MGF file format.
Definition: cv.hpp:3517
MS_c_terminal_flanking_residue
c-terminal flanking residue: The residue following the last amino acid in the peptide sequence as it ...
Definition: cv.hpp:3646
MS_ProteinExtractor_MascotPeptideScoreThreshold
ProteinExtractor:MascotPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4534
UNIMOD_4_ONE
4-ONE: 4-Oxononenal (ONE).
Definition: cv.hpp:9889
MS_M_LDI_L
M L: Waters oa-ToF based MALDI L.
Definition: cv.hpp:718
UNIMOD_Phosphoadenosine
Phosphoadenosine: AMP.
Definition: cv.hpp:9184
MS_ProteomeDiscoverer_Spectrum_Exporter_File_name
ProteomeDiscoverer:Spectrum Exporter:File name: Name of the output file that contains the exported da...
Definition: cv.hpp:5362
MS_mass_selective_instability_OBSOLETE
mass selective instability: A method for selective ejection of ions according to their m/z value in a...
Definition: cv.hpp:1354
MS_PSM_level_global_FDR
PSM-level global FDR: Estimation of the global false discovery rate of peptide spectrum matches...
Definition: cv.hpp:7342
UNIMOD_Hex_1_Pent_2_
Hex(1)Pent(2): Hex Pent(2).
Definition: cv.hpp:11428
MS_matrix_solution
matrix solution: Describes the chemical solution used as matrix.
Definition: cv.hpp:3046
UNIMOD_Propionyl_13C_3_
Propionyl:13C(3): Propionate labeling reagent heavy form (+3amu), N-term & K.
Definition: cv.hpp:8566
MS_target_list
target list: A list of peptides or compounds and their expected m/z coordinates that can be used to c...
Definition: cv.hpp:3310
MS_protein_identification_confidence_metric
protein identification confidence metric: Identification confidence metric for a protein.
Definition: cv.hpp:3877
MS_spectrum_descriptions
spectrum descriptions: Descriptions of the input spectra.
Definition: cv.hpp:4318
UNIMOD_EQAT_2H_5_
EQAT:2H(5): EAPTA d5.
Definition: cv.hpp:8809
UNIMOD_Succinyl_2H_4_
Succinyl:2H(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4H2), N-term & K...
Definition: cv.hpp:8584
UNIMOD_TMAB_2H_9_
TMAB:2H(9): D9-4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:9334
MS_temperature_array
temperature array: A data array of temperature measurements.
Definition: cv.hpp:3013
UNIMOD_dHex_1_Hex_4_HexNAc_4_NeuAc_1_
dHex(1)Hex(4)HexNAc(4)NeuAc(1): DHex Hex(4) HexNAc(4) NeuAc.
Definition: cv.hpp:12454
MS_electron_volt_OBSOLETE
electron volt: A non-SI unit of energy (eV) defined as the energy acquired by a particle containing o...
Definition: cv.hpp:616
MS_OpenXQuest
OpenXQuest: Cross-Linking MS search engine.
Definition: cv.hpp:8320
MS_microflex
microflex: Bruker Daltonics&#39; microflex: MALDI TOF.
Definition: cv.hpp:739
UNIMOD_Ala__Xle
Ala->Xle: Ala->Leu/Ile substitution.
Definition: cv.hpp:10456
UO_angle_unit
angle unit: A unit which is a standard measure of the figure or space formed by the junction of two l...
Definition: cv.hpp:12859
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_3_
dHex(1)Hex(2)HexNAc(2)NeuGc(3): DHex Hex(2) HexNAc(2) NeuGc(3).
Definition: cv.hpp:12349
UO_illuminance_unit
illuminance unit: A unit which is a standard measure of the luminous flux incident on a unit area...
Definition: cv.hpp:12841
UNIMOD_Trp__Asp
Trp->Asp: Trp->Asp substitution.
Definition: cv.hpp:10987
MS_precursor_ion_OBSOLETE
precursor ion: An ion that reacts to form particular product ions. The reaction can be unimolecular d...
Definition: cv.hpp:1438
MS_z_OBSOLETE
z (OBSOLETE charge number): The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:859
MS_profile_spectrum
profile spectrum: A profile mass spectrum is created when data is recorded with ion current (counts p...
Definition: cv.hpp:565
MS_DSQ
DSQ: ThermoFinnigan DSQ GC-MS.
Definition: cv.hpp:2422
MS_Trans_Proteomic_Pipeline_software
Trans-Proteomic Pipeline software: A software program that is a component of the Trans-Proteomic Pipe...
Definition: cv.hpp:7150
UNIMOD_Arg__Ala
Arg->Ala: Arg->Ala substitution.
Definition: cv.hpp:10879
MS_Thermo_Fisher_Scientific_instrument_model
Thermo Fisher Scientific instrument model: Thermo Fisher Scientific instrument model. The company has gone through several names including Thermo Finnigan, Thermo Scientific.
Definition: cv.hpp:1897
UNIMOD_Thr__Met
Thr->Met: Thr->Met substitution.
Definition: cv.hpp:9799
MS_SEQUEST_sort_by_MH_
SEQUEST:sort by MH+: Sort order of SEQUEST search results given by the mass of the protonated ion...
Definition: cv.hpp:3481
UNIMOD_Met__Thr
Met->Thr: Met->Thr substitution.
Definition: cv.hpp:9643
UNIMOD_IGBP
IGBP: Light IDBEST tag for quantitation.
Definition: cv.hpp:8845
MS_SEQUEST_sort_by_Ref
SEQUEST:sort by Ref: Sort order of SEQUEST search results given by the reference. ...
Definition: cv.hpp:3493
MS_ProteomeDiscoverer_Spectrum_Selector_SN_Threshold_FTonly
ProteomeDiscoverer:Spectrum Selector:SN Threshold FTonly: Signal-to-Noise ratio below which peaks are...
Definition: cv.hpp:5515
UO_colony_forming_unit
colony forming unit: A dimensionless count unit which a measure of viable bacterial numbers...
Definition: cv.hpp:13120
MS_quality_estimation_with_decoy_database
quality estimation with decoy database: Quality estimation by decoy database.
Definition: cv.hpp:3865
MS_field_free_region
field-free region: A section of a mass spectrometer in which there are no electric or magnetic fields...
Definition: cv.hpp:880
UO_gram
gram: A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg.
Definition: cv.hpp:12559
MS_TMT_reagent_131
TMT reagent 131: The name of the sample labelled with the TMT reagent 131.
Definition: cv.hpp:8158
MS_higher_energy_beam_type_collision_induced_dissociation
higher energy beam-type collision-induced dissociation: A collision-induced dissociation process wher...
Definition: cv.hpp:7735
UNIMOD_IMEHex_2_NeuAc_1_
IMEHex(2)NeuAc(1): Glycosylation with IME linked Hex(2) NeuAc.
Definition: cv.hpp:11137
UO_unit_of_molarity
unit of molarity: A concentration unit which is a standard measure of the number of moles of a given ...
Definition: cv.hpp:12679
MS_ProteomeDiscoverer_Spectrum_Selector_Total_Intensity_Threshold
ProteomeDiscoverer:Spectrum Selector:Total Intensity Threshold: Used to filter out tandem mass spectr...
Definition: cv.hpp:5101
MS_ADC
ADC (analog-digital converter): Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an el...
Definition: cv.hpp:526
MS_baseline_reduction
baseline reduction: A process of removal of varying intensities generated due to variable energy abso...
Definition: cv.hpp:2278
MS_PyMS
PyMS (pyrolysis mass spectrometry): A mass spectrometry technique in which the sample is heated to th...
Definition: cv.hpp:1192
MS_Mascot_score
Mascot:score: The Mascot result &#39;Score&#39;.
Definition: cv.hpp:3820
MS_precoated_MALDI_sample_plate
precoated MALDI sample plate: Precoated MALDI sample plate.
Definition: cv.hpp:3061
MS_MS1_label_based_protein_level_quantitation
MS1 label-based protein level quantitation: MS1 label-based protein level quantitation.
Definition: cv.hpp:6283
MS_MaxQuant_feature_intensity
MaxQuant:feature intensity: The data type feature intensity produced by MaxQuant. ...
Definition: cv.hpp:5965
MS_Thermo_Scientific_instrument_model
Thermo Scientific instrument model: Thermo Scientific instrument model.
Definition: cv.hpp:1930
MS_Q1_spectrum
Q1 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2203
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_
Hex(1)HexNAc(2)NeuAc(1): Hex HexNAc(2) NeuAc.
Definition: cv.hpp:11935
MS_mzidLib_FalseDiscoveryRate
mzidLib:FalseDiscoveryRate: A routine for calculating local FDR, q-value and FDRScore for mzIdentML f...
Definition: cv.hpp:7021
UNIMOD_DiLeu4plex115
DiLeu4plex115: Accurate mass for DiLeu 115 isobaric tag.
Definition: cv.hpp:11215
UNIMOD_Nethylmaleimide
Nethylmaleimide: N-ethylmaleimide on cysteines.
Definition: cv.hpp:8623
MS_6490_Triple_Quadrupole_LC_MS
6490 Triple Quadrupole LC/MS: The 6490 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7630
std::string def
Definition: cv.hpp:13386
MS_Weierstrass_transform
Weierstrass transform (Gaussian smoothing): Reduces intensity spikes by convolving the data with a on...
Definition: cv.hpp:2878
MS_software
software: Software related to the recording or transformation of spectra.
Definition: cv.hpp:2047
UO_count_per_molar
count per molar: A rate unit which is equal to one over one molar.
Definition: cv.hpp:13345
UNIMOD_Pro__Trp
Pro->Trp: Pro->Trp substitution.
Definition: cv.hpp:10837
MS_positive_scan
positive scan: Polarity of the scan is positive.
Definition: cv.hpp:577
MS_Mascot_MaxProteinHits
Mascot:MaxProteinHits: The number of protein hits to display in the report. If &#39;Auto&#39;, all protein hits that have a protein score exceeding the average peptide identity threshold are reported. Otherwise an integer at least 1.
Definition: cv.hpp:4204
MS_identification_file_attribute
identification file attribute: Attribute describing an identification file.
Definition: cv.hpp:6670
UNIMOD_Xle__Thr
Xle->Thr: Leu/Ile->Thr substitution.
Definition: cv.hpp:9586
UNIMOD_FTC
FTC: Fluorescein-5-thiosemicarbazide.
Definition: cv.hpp:9337
UNIMOD_Thrbiotinhydrazide
Thrbiotinhydrazide: Oxidized Threonine biotinylated with biotin hydrazide.
Definition: cv.hpp:9076
UNIMOD_HNE
HNE: 4-hydroxynonenal (HNE).
Definition: cv.hpp:8551
UO_temperature_unit
temperature unit: A unit which is a standard measure of the average kinetic energy of the particles i...
Definition: cv.hpp:12511
MS_search_engine_specific_peptide_sequence_level_identification_statistic
search engine specific peptide sequence-level identification statistic: Search engine specific distin...
Definition: cv.hpp:7366
UNIMOD_Cys__SecNEM
Cys->SecNEM: N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:10417
MS_LC_MS_feature_volume
LC-MS feature volume: Real (intensity times area) volume of the LC-MS feature.
Definition: cv.hpp:5779
MS_percolator_Q_value
percolator:Q value: Percolator:Q value.
Definition: cv.hpp:4720
UNIMOD_Methyl_2H_2_
Methyl:2H(2): Deuterium Methylation of Lysine.
Definition: cv.hpp:8914
UNIMOD_NIPCAM
NIPCAM: N-isopropylcarboxamidomethyl.
Definition: cv.hpp:8461
MS_modification_index
modification index: The order of modifications to be referenced elsewhere in the document.
Definition: cv.hpp:7804
UNIMOD_LG_lactam_K
LG-lactam-K: Levuglandinyl - lysine lactam adduct.
Definition: cv.hpp:9370
MS_MALDI_Solutions
MALDI Solutions: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:4915
MS_group_PSMs_by_sequence_with_modifications
group PSMs by sequence with modifications: Group PSMs by distinct peptide sequence with taking modifi...
Definition: cv.hpp:7783
MS_param__v_ion
param: v ion: Parameter information, type of product: side chain loss v ion.
Definition: cv.hpp:4045
MS_special_processing
special processing: Details describing a special processing.
Definition: cv.hpp:7759
MS_Glu_C
Glu-C (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6013
UNIMOD_DimethylpyrroleAdduct
DimethylpyrroleAdduct: 2,5-dimethypyrrole.
Definition: cv.hpp:8989
MS_BioTOF
BioTOF: Bruker Daltonics&#39; BioTOF: ESI TOF.
Definition: cv.hpp:4858
UNIMOD_IMID
IMID: IMID d0.
Definition: cv.hpp:8605
UNIMOD_Hex_5_HexNAc_4_Sulf_1_
Hex(5)HexNAc(4)Sulf(1): Hex(5) HexNAc(4) Sulf.
Definition: cv.hpp:11653
MS_electric_field_strength
electric field strength: The magnitude of the force per unit charge at a given point in space...
Definition: cv.hpp:1333
MS_Pepitome_mzFidelity
Pepitome:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5023
MS_6340_Ion_Trap_LC_MS
6340 Ion Trap LC/MS: The 6340 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1873
MS_ProteomeDiscoverer_Mascot_Weight_of_V_Ions
ProteomeDiscoverer:Mascot:Weight of V Ions: Determines if to use V ions for spectrum matching...
Definition: cv.hpp:5497
UNIMOD_Hydroxamic_acid
Hydroxamic_acid: Conversion of carboxylic acid to hydroxamic acid.
Definition: cv.hpp:11329
UNIMOD_Hex_6_HexNAc_4_
Hex(6)HexNAc(4): Hex(6) HexNAc(4).
Definition: cv.hpp:12445
UNIMOD_Sulfo
Sulfo: O-Sulfonation.
Definition: cv.hpp:8512
UO_colony_forming_unit_per_milliliter
colony forming unit per milliliter: A colony forming unit which a measure of viable bacterial numbers...
Definition: cv.hpp:13129
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuGc_1_
dHex(2)Hex(2)HexNAc(3)NeuGc(1): DHex(2) Hex(2) HexNAc(3) NeuGc.
Definition: cv.hpp:12277
MS_ProteomeDiscoverer_Fragment_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Fragment Mass Tolerance: Mass tolerance used for matching fragment peaks in Da or ...
Definition: cv.hpp:5221
UNIMOD_Hex_3_HexNAc_3_NeuAc_2_
Hex(3)HexNAc(3)NeuAc(2): Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:12322
UNIMOD_HexNAc_3_Sulf_1_
HexNAc(3)Sulf(1): HexNAc(3) Sulf.
Definition: cv.hpp:11839
UNIMOD_TMAB
TMAB: 4-trimethyllammoniumbutyryl-.
Definition: cv.hpp:9331
MS_TOPP_peak_picker
TOPP peak picker: Peak picker component of the TOPP software.
Definition: cv.hpp:6691
MS_cluster_ion_OBSOLETE
cluster ion: An ion formed by a multi-component atomic or molecular assembly of one or more ions with...
Definition: cv.hpp:1495
UNIMOD_Label_13C_6_15N_4__Methyl
Label:13C(6)15N(4)+Methyl: Monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:10351
MS_MPI
MPI (multiphoton ionization): Photoionization of an atom or molecule in which in two or more photons ...
Definition: cv.hpp:928
UNIMOD_Pro__Met
Pro->Met: Pro->Met substitution.
Definition: cv.hpp:10828
MS_ProteomeDiscoverer_WinCyg_source_files
ProteomeDiscoverer:WinCyg source files: Windows pepXML file names.
Definition: cv.hpp:5479
MS_neutralization_reionization_mass_spectrometry
neutralization reionization mass spectrometry: With this technique, m/z selected ions form neutrals b...
Definition: cv.hpp:1177
MS_vertical_ionization
vertical ionization: A process in which an electron is removed from or added to a molecule without a ...
Definition: cv.hpp:1645
MS_ProteomeDiscoverer_5__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:5. Dynamic Modification: ProteomeDiscoverer&#39;s 5th dynamic post-translational modif...
Definition: cv.hpp:7285
MS_MAT900XP
MAT900XP: ThermoFinnigan MAT900XP MS.
Definition: cv.hpp:727
UNIMOD_HexNAc_1_dHex_2_
HexNAc(1)dHex(2): HexNAc1dHex2.
Definition: cv.hpp:8710
MS_peptide_sequence_level_probability
peptide sequence-level probability: Probability that the reported distinct peptide sequence (irrespec...
Definition: cv.hpp:7378
UNIMOD_dHex_1_Hex_3_HexNAc_3_NeuAc_2_
dHex(1)Hex(3)HexNAc(3)NeuAc(2): DHex Hex(3) HexNAc(3) NeuAc(2).
Definition: cv.hpp:12358
MS_database_name
database name: The name of the search database (nr, SwissProt or est_human).
Definition: cv.hpp:3385
UNIMOD_Label_15N_3_
Label:15N(3): 15N(3).
Definition: cv.hpp:10333
UNIMOD_BMOE
BMOE: Addition of BMOE crosslinker.
Definition: cv.hpp:10030
MS_Pegasus_III
Pegasus III: LECO nominal mass resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:7123
MS_contact_fax_number
contact fax number: Fax number for the contact person or organization.
Definition: cv.hpp:5524
UNIMOD_Glu__Gln
Glu->Gln: Glu->Gln substitution.
Definition: cv.hpp:9517
MS_no_PSM_threshold
no PSM threshold: Indicating that no PSM threshold was used.
Definition: cv.hpp:7795
UNIMOD_PropylNAGthiazoline
PropylNAGthiazoline: Propyl-1,2-dideoxy-2\&#39;-methyl-alpha-D-glucopyranoso-[2,1-d]-Delta2\&#39;-thiazoline...
Definition: cv.hpp:9391
MS_database_UniProtKB_Swiss_Prot
database UniProtKB/Swiss-Prot: The name of the UniProtKB/Swiss-Prot knowledgebase.
Definition: cv.hpp:3619
UO_mole
mole: A substance unit which is equal to the amount of substance of a molecular system which contains...
Definition: cv.hpp:12535
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_
Hex(2)HexNAc(2)NeuAc(2): Hex(2) HexNAc(2) NeuAc(2).
Definition: cv.hpp:12163
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1): DHex Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:12286
MS_Paragon__digestion
Paragon: digestion: The Paragon method setting indicating the actual digestion agent - unlike other s...
Definition: cv.hpp:7600
MS_supplemental_collision_induced_dissociation
supplemental collision-induced dissociation: The dissociation of an ion after supplemental collisiona...
Definition: cv.hpp:8338
MS_thomson
thomson (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass ...
Definition: cv.hpp:232
UNIMOD_Cation_Zn_II_
Cation:Zn[II]: Replacement of 2 protons by zinc.
Definition: cv.hpp:10255
UNIMOD_Methylthio
Methylthio: Beta-methylthiolation.
Definition: cv.hpp:8509
MS_cross_linking_result_details
cross-linking result details: This subsection describes terms which can describe details of cross-lin...
Definition: cv.hpp:8326
UNIMOD_Met__Tyr
Met->Tyr: Met->Tyr substitution.
Definition: cv.hpp:10774
UNIMOD_HCysThiolactone
HCysThiolactone: N-Homocysteine thiolactone.
Definition: cv.hpp:11110
UNIMOD_Deamidated
Deamidated: Deamidation.
Definition: cv.hpp:8440
UNIMOD_Hex_2_HexNAc_2_dHex_1_
Hex(2)HexNAc(2)dHex(1): Hex2HexNAc2dHex1.
Definition: cv.hpp:8749
MS_Quattro_UItima
Quattro UItima: Waters oa-ToF based Ultima.
Definition: cv.hpp:784
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Neutral_Loss_Peaks
ProteomeDiscoverer:Non-Fragment Filter:Remove Neutral Loss Peaks: Determines whether neutral loss pea...
Definition: cv.hpp:5131
MS_Scaffold
Scaffold: Scaffold analysis software.
Definition: cv.hpp:4924
UNIMOD_Acetyl_2H_3_
Acetyl:2H(3): Acetate labeling reagent (N-term & K) (heavy form, +3amu).
Definition: cv.hpp:8560
MS_ProteinLynx_Ladder_Score
ProteinLynx:Ladder Score: Waters ProteinLynx Ladder score.
Definition: cv.hpp:4954
MS_higher_score_better
higher score better: Indicates that a higher score is better.
Definition: cv.hpp:6613
MS_SIM_spectrum
SIM spectrum: Spectrum obtained with the operation of a mass spectrometer in which the abundances of ...
Definition: cv.hpp:2227
UNIMOD_Ala__Arg
Ala->Arg: Ala->Arg substitution.
Definition: cv.hpp:10471
MS_infusion
infusion: The continuous flow of solution of a sample into the ionization source. ...
Definition: cv.hpp:298
MS_amaZon_Speed
amaZon Speed: Bruker Daltonics&#39; amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7195
MS_nanoelectrospray
nanoelectrospray: Electrospray ionization at a flow rate less than ~25 nL/min. Nanoelectrospray is sy...
Definition: cv.hpp:1612
UNIMOD_Lys__Val
Lys->Val: Lys->Val substitution.
Definition: cv.hpp:10729
MS_reporter_ion_normalized_value
reporter ion normalized value: Normalized value of MS2 reporter ion (e.g. iTraq). ...
Definition: cv.hpp:5827
MS_desorption_ionization_on_silicon
desorption/ionization on silicon: The formation of ions by laser desorption ionization of a sample de...
Definition: cv.hpp:1582
MS_fourier_transform_ion_cyclotron_resonance_mass_spectrometer
fourier transform ion cyclotron resonance mass spectrometer: A mass spectrometer based on the princip...
Definition: cv.hpp:373
MS_TOPP_MascotAdapter
TOPP MascotAdapter: Identifies MS2 spectra using the external program Mascot.
Definition: cv.hpp:6835
MS_quistor_OBSOLETE
quistor: An abbreviation of quadrupole ion storage trap. This term is synonymous with Paul Ion Trap...
Definition: cv.hpp:1306
MS_doi
doi (Digital Object Identifier (DOI)): DOI unique identifier of a publication.
Definition: cv.hpp:6028
MS_Scaffold_Peptide_Probability
Scaffold:Peptide Probability: Scaffold peptide probability score.
Definition: cv.hpp:4945
MS_count_of_identified_clusters
count of identified clusters: The number of protein clusters that have been identified, which must match the number of clusters that pass the threshold in the file.
Definition: cv.hpp:7510
MS_4700_Proteomics_Analyzer
4700 Proteomics Analyzer: Applied Biosystems/MDS SCIEX 4700 Proteomics Analyzer MS.
Definition: cv.hpp:628
MS_Thermo_RAW_format
Thermo RAW format: Thermo Scientific RAW file format.
Definition: cv.hpp:2146
MS_orthogonal_extraction_OBSOLETE
orthogonal extraction: The pulsed acceleration of ions perpendicular to their direction of travel int...
Definition: cv.hpp:1360
UNIMOD_Asp__Asn
Asp->Asn: Asp->Asn substitution.
Definition: cv.hpp:9499
UO_watt_per_meter_kelvin
watt per meter kelvin: An heat conduction unit which is equal to one watt divided by meter kelvin...
Definition: cv.hpp:13285
UO_katal
katal: A catalytic unit activity which is equal to the activity of a catalyst in moles per second...
Definition: cv.hpp:12856
MS_surface_enhanced_neat_desorption
surface enhanced neat desorption: Matrix-assisted laser desorption ionization in which the matrix is ...
Definition: cv.hpp:1219
MS_dataset_submitter
dataset submitter: A person who submits a dataset to a repository.
Definition: cv.hpp:6397
UNIMOD_Trp__Arg
Trp->Arg: Trp->Arg substitution.
Definition: cv.hpp:9835
MS_ion_optics
ion optics: Device used in the construction of a mass spectrometer to focus, contain or otherwise man...
Definition: cv.hpp:1828
MS_no_nativeID_format
no nativeID format: No nativeID format indicates that the file tagged with this term does not contain...
Definition: cv.hpp:3019
MS_electron_multiplier
electron multiplier: A device to amplify the current of a beam or packet of charged particles or phot...
Definition: cv.hpp:1060
MS_Phenyx_Turbo_ErrorTol
Phenyx:Turbo:ErrorTol: The maximal allowed fragment m/z error filter considered in the turbo mode of ...
Definition: cv.hpp:4390
MS_MALDI_LTQ_Orbitrap
MALDI LTQ Orbitrap: Thermo Scientific MALDI LTQ Orbitrap MS.
Definition: cv.hpp:2449
UNIMOD_Ethoxyformyl
Ethoxyformyl: Ethoxyformylation.
Definition: cv.hpp:10177
MS_chromatogram_attribute
chromatogram attribute: Chromatogram properties that are associated with a value. ...
Definition: cv.hpp:2968
UNIMOD_phosphoRibosyl
phosphoRibosyl: Phosphate-ribosylation.
Definition: cv.hpp:11269
MS_MapNormalizer
MapNormalizer: Normalizes peak intensities in an MS run.
Definition: cv.hpp:2800
MS_protein_value__sum_of_peptide_values
protein value: sum of peptide values: Protein quantification value calculated as sum of peptide value...
Definition: cv.hpp:5809
UNIMOD_Thioacyl
Thioacyl: 3-sulfanylpropanoyl.
Definition: cv.hpp:8662
MS_mass_table_options
mass table options: Root node for options for the mass table used.
Definition: cv.hpp:4312
MS_2000_QTRAP
2000 QTRAP: SCIEX 2000 QTRAP.
Definition: cv.hpp:8026
MS_declustering_potential
declustering potential: Potential difference between the orifice and the skimmer in volts...
Definition: cv.hpp:3175
MS_sequence_subsumable_protein
sequence subsumable protein: A sequence same-set or sequence sub-set protein where the matches are di...
Definition: cv.hpp:5050
UO_information_unit
information unit: A unit which is a standard measure of the amount of information.
Definition: cv.hpp:13183
MS_Mascot_PreferredTaxonomy
Mascot:PreferredTaxonomy: NCBI TaxID taxonomy ID to prefer when two or more proteins match the same s...
Definition: cv.hpp:5635
MS_DLI
DLI (direct liquid introduction): The delivery of a liquid sample into a mass spectrometer for spray ...
Definition: cv.hpp:1039
MS_generic_experimental_condition
generic experimental condition: The experimental condition is given in the value of this term...
Definition: cv.hpp:5698
MS_mass_unit_OBSOLETE
mass unit: A unit of measurement for mass.
Definition: cv.hpp:1837
MS_quality_estimation_method_details
quality estimation method details: Method for quality estimation (manually or with decoy database)...
Definition: cv.hpp:3511
MS_ProteomeDiscoverer_Max_Precursor_Mass
ProteomeDiscoverer:Max Precursor Mass: Maximum mass limit of a singly charged precursor ion...
Definition: cv.hpp:5077
UNIMOD_Hex_1_HexA_1_HexNAc_1_
Hex(1)HexA(1)HexNAc(1): Hex HexA HexNAc.
Definition: cv.hpp:11461
UNIMOD_Delta_H_8_C_6_O_1_
Delta:H(8)C(6)O(1): Reduced acrolein addition +96.
Definition: cv.hpp:11200
MS_Constant_Neutral_Mass_Gain_Scan_OBSOLETE
Constant Neutral Mass Gain Scan (constant neutral gain scan): Spectrum of all precursor ions that und...
Definition: cv.hpp:1384
MS_Resampler
Resampler: Transforms an LC/MS map into a resampled map or a png image.
Definition: cv.hpp:2809
MS_fluorescence_detector
fluorescence detector: A detector using a fluorescent signal after excitation with light...
Definition: cv.hpp:7216
MS_ABI
ABI (Applied Biosystems instrument model): Applied Biosystems instrument model.
Definition: cv.hpp:1936
MS_fragment_neutral_loss
fragment neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4819
MS_scan_window_upper_limit
scan window upper limit: The lower m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1954
MS_CID
CID (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:589
MS_TOPP_IDMapper
TOPP IDMapper: Assigns protein/peptide identifications to feature or consensus features.
Definition: cv.hpp:6862
UNIMOD_Xlink_B10621
Xlink:B10621: Bis-N-I-sulfonerahodamine.
Definition: cv.hpp:9001
UO_square_centimeter
square centimeter: An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]...
Definition: cv.hpp:12739
UO_irradiance_unit
irradiance unit: A unit which is a standard measure of the power of electromagnetic radiation at a su...
Definition: cv.hpp:12952
MS_peak_intensity_rank
peak intensity rank: Ordinal specifying the rank in intensity of a peak in a spectrum. Base peak is 1. The next most intense peak is 2, etc.
Definition: cv.hpp:3271
Information about an ontology or CV source and a short &#39;lookup&#39; tag to refer to.
Definition: cv.hpp:13353
MS_ProteomeDiscoverer_max_differential_modifications
ProteomeDiscoverer:max differential modifications: Maximum dynamic modifications per PSM...
Definition: cv.hpp:7252
UNIMOD_Thr__Cys
Thr->Cys: Thr->Cys substitution.
Definition: cv.hpp:10921
MS_moving_wire
moving wire: Continuous moving surface in the form of a wire which passes through an ion source carry...
Definition: cv.hpp:310
MS_TIC_chromatogram
TIC chromatogram (total ion current chromatogram): Chromatogram obtained by plotting the total ion cu...
Definition: cv.hpp:958
MS_identification_parameter
identification parameter: Identification parameter for the search engine run.
Definition: cv.hpp:8275
UNIMOD_dHex_1_Hex_6_
dHex(1)Hex(6): Hex6dHex1.
Definition: cv.hpp:11311
UNIMOD_Asp__Trp
Asp->Trp: Asp->Trp substitution.
Definition: cv.hpp:10546
UNIMOD_Glu__Tyr
Glu->Tyr: Glu->Tyr substitution.
Definition: cv.hpp:10582
UNIMOD_iodoTMT6plex
iodoTMT6plex: Sixplex iodoacetyl Tandem Mass Tag®.
Definition: cv.hpp:11248
UNIMOD_Label_15N_2_2H_9_
Label:15N(2)2H(9): SILAC label.
Definition: cv.hpp:10228
MS_alternate_mass
alternate mass: List of masses a non-standard letter code is replaced with.
Definition: cv.hpp:4333
MS_simple_ratio_of_two_values
simple ratio of two values: Simple ratio of two values (enumerator and denominator).
Definition: cv.hpp:5800
MS_de_novo_search
de novo search: A de novo sequencing search (without database).
Definition: cv.hpp:3376
UO_volume_percentage
volume percentage: A dimensionless concentration unit which denotes the volume of the solute in mL pe...
Definition: cv.hpp:12985
MS_collision_induced_dissociation
collision-induced dissociation: The dissociation of an ion after collisional excitation. The term collisional-activated dissociation is not recommended.
Definition: cv.hpp:586
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Activation_Type_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Activation Type Replacements: Specifies the fragmen...
Definition: cv.hpp:5104
UNIMOD_Met__Val
Met->Val: Met->Val substitution.
Definition: cv.hpp:9655
UNIMOD_dHex_4_Hex_2_HexNAc_3_
dHex(4)Hex(2)HexNAc(3): DHex(4) Hex(2) HexNAc(3).
Definition: cv.hpp:12271
MS_site_global_FDR
site:global FDR: Estimation of global false discovery rate of peptides with a post-translational modi...
Definition: cv.hpp:7309
UO_radian
radian: A plane angle unit which is equal to the angle subtended at the center of a circle by an arc ...
Definition: cv.hpp:12865
UNIMOD_Arg__Ser
Arg->Ser: Arg->Ser substitution.
Definition: cv.hpp:9718
MS_TrypChymo
TrypChymo: Cleavage agent TrypChymo.
Definition: cv.hpp:4189
MS_ion_optics_type
ion optics type: The electrical potential used to impart kinetic energy to ions in a mass spectromete...
Definition: cv.hpp:2293
MS_ProteomeDiscoverer_Search_Against_Decoy_Database_OBSOLETE
ProteomeDiscoverer:Search Against Decoy Database: Determines whether the Proteome Discoverer applicat...
Definition: cv.hpp:5302
UNIMOD_Ethyl
Ethyl: Ethylation.
Definition: cv.hpp:8908
MS_atmospheric_pressure_photoionization
atmospheric pressure photoionization: Atmospheric pressure chemical ionization in which the reactant ...
Definition: cv.hpp:1567
MS_ProteinExtractor_Score
ProteinExtractor:Score: The score calculated by ProteinExtractor.
Definition: cv.hpp:4768
UNIMOD_Thiophos_S_S_biotin
Thiophos-S-S-biotin: Thiophosphate labeled with biotin-HPDP.
Definition: cv.hpp:9019
MS_PolyTools
PolyTools: Bruker PolyTools software.
Definition: cv.hpp:2698
MS_light_labeled_peptide
light labeled peptide (unlabeled peptide): A peptide that has not been labelled with heavier-than-usu...
Definition: cv.hpp:3229
MS_PIA_protein_inference
PIA:protein inference: The used algorithm for the protein inference using PIA.
Definition: cv.hpp:7477
MS_LTQ_Orbitrap
LTQ Orbitrap: Finnigan LTQ Orbitrap MS.
Definition: cv.hpp:1780
UNIMOD_ICAT_C_13C_9_
ICAT-C:13C(9): Applied Biosystems cleavable ICAT(TM) heavy.
Definition: cv.hpp:8617
UNIMOD_Deoxy
Deoxy: Reduction.
Definition: cv.hpp:9292
MS_Mascot_SigThresholdType
Mascot:SigThresholdType: Significance threshold type used in Mascot reporting (either &#39;identity&#39; or &#39;...
Definition: cv.hpp:5530
MS_minimum_number_of_enzymatic_termini
minimum number of enzymatic termini: Minimum number of enzymatic termini a peptide must have to be ac...
Definition: cv.hpp:4975
MS_taxonomy__common_name
taxonomy: common name: This term is used if a common name is specified, e.g. human. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4642
UNIMOD_iTRAQ4plex115
iTRAQ4plex115: Accurate mass for 115.
Definition: cv.hpp:9433
MS_iTRAQ_reagent_115
iTRAQ reagent 115: The name of the sample labelled with the iTRAQ reagent 115.
Definition: cv.hpp:8170
MS_SpectraST_delta
SpectraST:delta: SpectraST normalised difference between dot product of top hit and runner-up...
Definition: cv.hpp:4501
UNIMOD_Val__Asn
Val->Asn: Val->Asn substitution.
Definition: cv.hpp:10960
MS_faraday_cup
faraday cup: A conducting cup or chamber that intercepts a charged particle beam and is electrically ...
Definition: cv.hpp:502
MS_contact_toll_free_phone_number
contact toll-free phone number: Toll-free phone number of the contact person or organization.
Definition: cv.hpp:5527
UNIMOD_Cys__SecNEM_2H_5_
Cys->SecNEM:2H(5): D5 N-ethylmaleimide on selenocysteines.
Definition: cv.hpp:10420
MS_experiment_name
experiment name: The name for identifying an experiment.
Definition: cv.hpp:6649
MS_mass_selective_axial_ejection_OBSOLETE
mass selective axial ejection: The use of mass selective instability to eject ions of selected m/z va...
Definition: cv.hpp:1351
UNIMOD_UgiJoullieProGlyProGly
UgiJoullieProGlyProGly: Side reaction of PGPG with Side chain of aspartic or glutamic acid...
Definition: cv.hpp:11134
MS_phosphoRS_site_probability_threshold
phosphoRS site probability threshold: Threshold for phosphoRS site probability.
Definition: cv.hpp:7999
UNIMOD_trifluoro
trifluoro: Trifluoroleucine replacement of leucine.
Definition: cv.hpp:9961
MS______FYWL_____P_
(?<=[FYWL])(?!P): Regular expression for Chymotrypsin.
Definition: cv.hpp:4246
UNIMOD_Phe__Ser
Phe->Ser: Phe->Ser substitution.
Definition: cv.hpp:9532
MS_frag__x_ion___H2O
frag: x ion - H2O: Fragmentation information, type of product: x ion without water.
Definition: cv.hpp:4804
MS_MS1_label_based_peptide_level_quantitation
MS1 label-based peptide level quantitation: MS1 label-based peptide level quantitation.
Definition: cv.hpp:6280
MS_PAnalyzer_conclusive_protein
PAnalyzer:conclusive protein: A protein identified by at least one unique (distinct, discrete) peptide (peptides are considered different only if they can be distinguished by evidence in mass spectrum).
Definition: cv.hpp:6928
UNIMOD_Asp__Cys
Asp->Cys: Asp->Cys substitution.
Definition: cv.hpp:10516
UO_parts_per_million
parts per million: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:12997
MS_Maltcms
Maltcms: Modular Application Toolkit for Chromatography Mass-Spectrometry is an application framework...
Definition: cv.hpp:7324
MS_maXis_4G
maXis 4G: Bruker Daltonics&#39; maXis 4G: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7126
MS_ProteinScape_second_round_Phenyx
ProteinScape:second round Phenyx: Flag indicating a second round search with Phenyx.
Definition: cv.hpp:6160
MS_protein_inference_confidence_category
protein inference confidence category: Confidence category of inferred protein (conclusive, non conclusive, ambiguous group or indistinguishable).
Definition: cv.hpp:5056
MS_SRM_chromatogram
SRM chromatogram (selected reaction monitoring chromatogram): Chromatogram created by creating an arr...
Definition: cv.hpp:4663
UNIMOD_Withaferin
Withaferin: Modification of cystein by withaferin.
Definition: cv.hpp:10426
UNIMOD_Biotin_Thermo_88317
Biotin:Thermo-88317: Desthiobiotin fluorophosphonate.
Definition: cv.hpp:10429
MS_Morpheus
Morpheus: Morpheus search engine.
Definition: cv.hpp:8284
MS_product_ion_detection_probability
product ion detection probability: Probability of detecting product ion when precursor ion is present...
Definition: cv.hpp:6961
MS_LD_OBSOLETE
LD (Laser Desorption): The formation of ions through the interaction of a laser with a material or wi...
Definition: cv.hpp:1144
UNIMOD_OxArgBiotin
OxArgBiotin: Oxidized arginine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8638
MS_Bruker_Daltonics_SCION_series
Bruker Daltonics SCION series: Bruker Daltonics&#39; SCION series.
Definition: cv.hpp:7171
UNIMOD_Xlink_EGScleaved
Xlink:EGScleaved: EGS crosslinker to Lys or N-terminus following hydroxylamine cleavage.
Definition: cv.hpp:10408
UNIMOD_pyrophospho
pyrophospho: Pyrophosphorylation of Ser/Thr.
Definition: cv.hpp:10135
UNIMOD_ethylsulfonylethyl
ethylsulfonylethyl: Reaction with ethyl vinyl sulfone.
Definition: cv.hpp:11317
MS_QSTAR
QSTAR: Applied Biosystems/MDS SCIEX QSTAR MS.
Definition: cv.hpp:778
UNIMOD_Hydroxymethyl
Hydroxymethyl: Hydroxymethyl.
Definition: cv.hpp:9208
MS_Waters_software
Waters software: Waters software for data acquisition and analysis.
Definition: cv.hpp:2599
MS_B
B (magnetic field strength): A property of space that produces a force on a charged particle equal to...
Definition: cv.hpp:178
UNIMOD_Asp__Ala
Asp->Ala: Asp->Ala substitution.
Definition: cv.hpp:9493
MS_Thermo_Finnigan_software
Thermo Finnigan software: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2596
MS_Xevo_G2_Q_Tof
Xevo G2 Q-Tof: Waters oa-ToF based Xevo G2 Q-Tof.
Definition: cv.hpp:5605
UNIMOD_Lys__Asp
Lys->Asp: Lys->Asp substitution.
Definition: cv.hpp:10711
MS_Paragon_contrib
Paragon:contrib: The Paragon result &#39;Contrib&#39;.
Definition: cv.hpp:3817
MS_MS1_format
MS1 format: MS1 file format for MS1 spectral data.
Definition: cv.hpp:8086
MS_Phenyx_Auto
Phenyx:Auto: The value of the automatic peptide acceptance filter in Phenyx.
Definition: cv.hpp:4429
MS_peptide_shared_in_multiple_proteins
peptide shared in multiple proteins: A peptide matching multiple proteins.
Definition: cv.hpp:3832
UNIMOD_Nitro
Nitro: Oxidation to nitro.
Definition: cv.hpp:9064
UNIMOD_Hex_4_HexNAc_2_
Hex(4)HexNAc(2): Hex(4) HexNAc(2).
Definition: cv.hpp:11500
MS_MaxQuant_peptide_counts__unique_
MaxQuant:peptide counts (unique): The data type peptide counts (unique) produced by MaxQuant...
Definition: cv.hpp:5947
MS_constant_neutral_mass_loss_OBSOLETE
constant neutral mass loss: A spectrum formed of all product ions that have been produced with a sele...
Definition: cv.hpp:445
MS_Th
Th (m/z): Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an...
Definition: cv.hpp:229
MS_ProteomeDiscoverer_Spectrum_Files_Raw_File_names_OBSOLETE
ProteomeDiscoverer:Spectrum Files:Raw File names: Name and location of the .raw file or files...
Definition: cv.hpp:5059
MS_Profound_Cluster
Profound:Cluster: The Profound cluster score.
Definition: cv.hpp:4744
UO_amount_per_container
amount per container: A concentration unit which is a standard measure of the amount of a substance i...
Definition: cv.hpp:13318
UO_radian_per_second_per_second
radian per second per second: An angular unit acceleration which is equal to the angular acceleration...
Definition: cv.hpp:12730
UNIMOD_Tyr__Ser
Tyr->Ser: Tyr->Ser substitution.
Definition: cv.hpp:9847
UO_weber
weber: A magnetic flux unit which is equal to the amount of flux that when linked with a single turn ...
Definition: cv.hpp:13168
MS_Triple_Quad_5500
Triple Quad 5500: SCIEX Triple Quad 5500.
Definition: cv.hpp:8074
MS_selection_window_attribute
selection window attribute: Selection window properties that are associated with a value...
Definition: cv.hpp:2104
UNIMOD_AROD
AROD: Cysteine modifier.
Definition: cv.hpp:10210
MS_value_greater_than_zero
value greater than zero: Positive value range.
Definition: cv.hpp:7210
MS_SNAP
SNAP (sophisticated numerical annotation procedure): It searches for known patterns in the measured s...
Definition: cv.hpp:6268
UNIMOD_dHex_1_HexNAc_3_
dHex(1)HexNAc(3): DHex HexNAc(3).
Definition: cv.hpp:11875
MS_selected_ion_flow_tube
selected ion flow tube: A device in which m/z selected ions are entrained in an inert carrier gas and...
Definition: cv.hpp:1231
UNIMOD_dHex_1_Hex_3_HexNAc_6_Sulf_1_
dHex(1)Hex(3)HexNAc(6)Sulf(1): DHex Hex(3) HexNAc(6) Sulf.
Definition: cv.hpp:11782
MS_additional_description_OBSOLETE
additional description: Terms to describe Additional.
Definition: cv.hpp:1825
UNIMOD_Tyr__Lys
Tyr->Lys: Tyr->Lys substitution.
Definition: cv.hpp:11032
MS_SQID_deltaScore
SQID:deltaScore: The SQID result &#39;deltaScore&#39;.
Definition: cv.hpp:5920
MS_ProteomeDiscoverer_Maximum_Missed_Cleavage_Sites
ProteomeDiscoverer:Maximum Missed Cleavage Sites: Maximum number of missed cleavage sites to consider...
Definition: cv.hpp:5227
MS_param__y_ion
param: y ion: Parameter information, type of product: y ion with charge on the C-terminal side...
Definition: cv.hpp:4060
MS_MS2_tag_based_analysis
MS2 tag-based analysis: MS2 tag-based analysis.
Definition: cv.hpp:6355
MS_phosphoRS_sequence_probability
phosphoRS sequence probability: Probability that the respective isoform is correct.
Definition: cv.hpp:6175
MS_ProteomeDiscoverer_Peptide_Without_Protein_Cut_Off_Score
ProteomeDiscoverer:Peptide Without Protein Cut Off Score: Cut off score for storing peptides that do ...
Definition: cv.hpp:7429
MS_X_Tandem_hyperscore
X!Tandem:hyperscore: The X!Tandem hyperscore.
Definition: cv.hpp:4243
MS_aromatic_ion_OBSOLETE
aromatic ion: A planar cyclic ion that obeys the Hueckel (4n + 2) rule where n is a positive integer ...
Definition: cv.hpp:1483
MS_q
q (collision quadrupole): A transmission quadrupole to which an oscillating potential is applied so a...
Definition: cv.hpp:1198
MS_database_filtering
database filtering: Was there filtering used on the database.
Definition: cv.hpp:3403
UNIMOD_O_Methylphosphate
O-Methylphosphate: O-Methylphosphorylation.
Definition: cv.hpp:9895
MS_Digital_Object_Identifier__DOI_
Digital Object Identifier (DOI): DOI unique identifier of a publication.
Definition: cv.hpp:6025
MS_Asp_N_ambic
Asp-N_ambic: Enzyme Asp-N, Ammonium Bicarbonate (AmBic).
Definition: cv.hpp:4168
MS_CNBr
CNBr: Cyanogen bromide.
Definition: cv.hpp:4174
UNIMOD_Hex_1_HexNAc_3_NeuAc_1_
Hex(1)HexNAc(3)NeuAc(1): Hex HexNAc(3) NeuAc.
Definition: cv.hpp:12031
UNIMOD_MolybdopterinGD_Delta_S__1_Se_1_
MolybdopterinGD+Delta:S(-1)Se(1): L-selenocysteinyl molybdenum bis(molybdopterin guanine dinucleotide...
Definition: cv.hpp:9211
MS_SpectrumMill_Score
SpectrumMill:Score: Spectrum mill peptide score.
Definition: cv.hpp:4957
MS_mass_spectrometry_mass_spectrometry_OBSOLETE
mass spectrometry/mass spectrometry: The acquisition, study and spectra of the electrically charged p...
Definition: cv.hpp:1159
UNIMOD_Deoxyhypusine
Deoxyhypusine: Deoxyhypusine.
Definition: cv.hpp:10438
UNIMOD_Xlink_DMP_s
Xlink:DMP-s: One end of crosslink attached, one end free.
Definition: cv.hpp:9316
UO_decibel
decibel: An ratio unit which is an indicator of sound power per unit area.
Definition: cv.hpp:13267
UNIMOD_Pro__Asn
Pro->Asn: Pro->Asn substitution.
Definition: cv.hpp:10831
MS_mzidLib_Mzidentml2Csv
mzidLib:Mzidentml2Csv: A tool for converting mzIdentML files to CSV format.
Definition: cv.hpp:7024
UNIMOD_Asn__Cys
Asn->Cys: Asn->Cys substitution.
Definition: cv.hpp:10780
MS_param__a_ion_H2O_DEPRECATED
param: a ion-H2O DEPRECATED: Ion a-H2O if a significant and fragment includes STED.
Definition: cv.hpp:3751
MS_TOPP_FeatureFinderRaw
TOPP FeatureFinderRaw: Detects two-dimensional features in uncentroided LC-MS data.
Definition: cv.hpp:6790
MS_mass_trace_reporting__polygons
mass trace reporting: polygons: The mass trace of the features of this feature list specifies polygon...
Definition: cv.hpp:5737
MS_ProteinProspector
ProteinProspector: ProteinProspector software for data acquisition and analysis.
Definition: cv.hpp:6418
UNIMOD_Asp__Xle
Asp->Xle: Asp->Leu/Ile substitution.
Definition: cv.hpp:10522
MS_LTQ_Orbitrap_XL_ETD
LTQ Orbitrap XL ETD: Thermo Scientific LTQ Orbitrap XL MS with ETD.
Definition: cv.hpp:2437
UNIMOD_dHex_4_Hex_3_HexNAc_3_
dHex(4)Hex(3)HexNAc(3): DHex(4) Hex(3) HexNAc(3).
Definition: cv.hpp:12328
MS_ProteomeDiscoverer_Spectrum_Selector_Use_New_Precursor_Reevaluation
ProteomeDiscoverer:Spectrum Selector:Use New Precursor Reevaluation: Determines if to use precursor r...
Definition: cv.hpp:5512
UNIMOD_OxLysBiotinRed
OxLysBiotinRed: Oxidized lysine biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:8626
UO_count_per_nanomolar_second
count per nanomolar second: A rate unit which is equal to one over one nanomolar second.
Definition: cv.hpp:13333
MS_Byonic__Protein_AbsLogProb
Byonic: Protein AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7222
UNIMOD_Pro__Asp
Pro->Asp: Pro->Asp substitution.
Definition: cv.hpp:10813
MS_transition_validation_method
transition validation method: The strategy used to validate that a transition is effective.
Definition: cv.hpp:3283
MS_cone_voltage
cone voltage: Potential difference between the sampling cone/orifice in volts.
Definition: cv.hpp:3178
UNIMOD_Hex_1_HexNAc_1_Phos_1_
Hex(1)HexNAc(1)Phos(1): Hex HexNAc Phos.
Definition: cv.hpp:11431
UNIMOD_dHex_2_Hex_2_HexNAc_4_
dHex(2)Hex(2)HexNAc(4): DHex(2) Hex(2) HexNAc(4).
Definition: cv.hpp:12223
UNIMOD_Asp__Phe
Asp->Phe: Asp->Phe substitution.
Definition: cv.hpp:10519
MS_ProteomeDiscoverer_1__Static_Terminal_Modification
ProteomeDiscoverer:1. Static Terminal Modification: Determine 1st static terminal post-translational ...
Definition: cv.hpp:7858
UNIMOD_maleimide3
maleimide3: Maleimide-3-saccharide.
Definition: cv.hpp:10282
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge4: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5413
UO_micron_pixel
micron pixel: A spatial resolution unit which is equal to a pixel size of one micrometer.
Definition: cv.hpp:13213
MS_ion_attribute_OBSOLETE
ion attribute: Ion properties that are associated with a value.
Definition: cv.hpp:1975
UNIMOD_Methyl_Acetyl_2H_3_
Methyl+Acetyl:2H(3): Mono-methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:9985
MS_API_365
API 365: Applied Biosystems/MDS SCIEX API 365 MS.
Definition: cv.hpp:8065
MS_quick_and_dirty_MALDI_sample_preparation
quick and dirty MALDI sample preparation: Quick & dirty (Q&D) sample preparation separating matrix ha...
Definition: cv.hpp:6250
MS_ProteomeDiscoverer_SRF_File_Selector_SRF_File_Path_OBSOLETE
ProteomeDiscoverer:SRF File Selector:SRF File Path: Path and name of the .srf (SEQUEST Result Format)...
Definition: cv.hpp:5062
UNIMOD_Trp__Oxolactone
Trp->Oxolactone: Tryptophan oxidation to oxolactone.
Definition: cv.hpp:8923
MS_regular_expression
regular expression: Regular expression.
Definition: cv.hpp:7729
MS_H_Score
H-Score: H-Score for peptide phosphorylation site location.
Definition: cv.hpp:6229
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge3: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5410
MS_MSQuant_PTM_score
MSQuant:PTM-score: The PTM score from MSQuant software.
Definition: cv.hpp:6205
MS_MaxQuant_PTM_Score_threshold
MaxQuant:PTM Score threshold: Threshold for MaxQuant:PTM Score.
Definition: cv.hpp:7984
MS_SEQUEST_probability
SEQUEST:probability: The SEQUEST result &#39;Probability&#39;.
Definition: cv.hpp:3769
MS_Bioworks_SRF_format
Bioworks SRF format: Thermo Finnigan SRF file format.
Definition: cv.hpp:2743
MS_distinct_peptide_sequences
distinct peptide sequences: This counts distinct sequences hitting the protein without regard to a mi...
Definition: cv.hpp:3598
MS_BSI_software
BSI software: Bioinformatics Solutions Inc. Software for data processing and analysis.
Definition: cv.hpp:6112
MS_MS1_label_based_proteingroup_level_quantitation
MS1 label-based proteingroup level quantitation: MS1 label-based proteingroup level quantitation...
Definition: cv.hpp:6286
MS_ECD
ECD (electron capture dissociation): A process in which a multiply protonated molecules interacts wit...
Definition: cv.hpp:1045
MS_sandwich_MALDI_sample_preparation
sandwich MALDI sample preparation: Sandwich MALDI sample preparation method.
Definition: cv.hpp:6244
UNIMOD_maleimide
maleimide: Maleimide.
Definition: cv.hpp:9994
MS_ProteomeDiscoverer_Xtract_Lowest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Lowest MZ: Lowest mass-to-charge (mz) value for spectral peaks in the measu...
Definition: cv.hpp:5164
MS_ProteinExtractor_MascotWeighting
ProteinExtractor:MascotWeighting: Influence of Mascot search engine in the process of merging the sea...
Definition: cv.hpp:4543
UNIMOD_Asn__His
Asn->His: Asn->His substitution.
Definition: cv.hpp:9670
UNIMOD_dHex_1_Hex_3_HexNAc_5_NeuAc_1_
dHex(1)Hex(3)HexNAc(5)NeuAc(1): DHex Hex(3) HexNAc(5) NeuAc.
Definition: cv.hpp:12460
UNIMOD_ADP_Ribosyl
ADP-Ribosyl: ADP Ribose addition.
Definition: cv.hpp:8839
MS_TWIMS_OBSOLETE
TWIMS (travelling wave ion mobility mass spectrometer): An ion mobility mass spectrometry technique b...
Definition: cv.hpp:5647
MS_Synapt_MS
Synapt MS: Waters oa-ToF based Synapt MS.
Definition: cv.hpp:5602
MS_Bruker_software
Bruker software: Bruker software for data acquisition and analysis.
Definition: cv.hpp:2593
UNIMOD_His__Xle
His->Xle: His->Leu/Ile substitution.
Definition: cv.hpp:9583
UNIMOD_Nmethylmaleimide_water
Nmethylmaleimide+water: Nmethylmaleimidehydrolysis.
Definition: cv.hpp:9364
MS_charge_exchange_ionization
charge exchange ionization: The interaction of an ion with an atom or molecule in which the charge on...
Definition: cv.hpp:1576
PWIZ_API_DECL const std::vector< CVID > & cvids()
returns vector of all valid CVIDs
MS_spectrum_identification_result_details
spectrum identification result details: This subsection describes terms which can describe details of...
Definition: cv.hpp:4456
MS_final_MS_exponent
final MS exponent: Final MS level achieved when performing PFF with the ion trap (e.g. MS E10).
Definition: cv.hpp:172
MS_Shimadzu_Biotech_database_entity
Shimadzu Biotech database entity: Shimadzu Biotech format.
Definition: cv.hpp:3346
MS_accuracy
accuracy: Accuracy is the degree of conformity of a measured mass to its actual value.
Definition: cv.hpp:142
MS_protein_group_level_statistical_threshold
protein group-level statistical threshold: Estimated statistical threshold at protein group-level...
Definition: cv.hpp:7750
UO_surface_tension_unit
surface tension unit: A unit which is a standard measure of the ability of a liguid to attraction of ...
Definition: cv.hpp:13249
MS_apexControl
apexControl: Bruker software for data acquisition.
Definition: cv.hpp:2635
UNIMOD_OxProBiotinRed
OxProBiotinRed: Oxidized proline biotinylated with biotin-LC-hydrazide, reduced.
Definition: cv.hpp:8632
UNIMOD_ICPL_13C_6_2H_4_
ICPL:13C(6)2H(4): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, +10 Da form...
Definition: cv.hpp:10084
UO_milliliter_per_cubic_meter
milliliter per cubic meter: A volume per unit volume unit which is equal to one millionth of a liter ...
Definition: cv.hpp:13108
MS_global_FLR
global FLR: Global false localization rate for all localizations in a dataset.
Definition: cv.hpp:8374
MS_spectrum_multiply_subsumable_protein
spectrum multiply subsumable protein: A protein for which the matched spectra are the same...
Definition: cv.hpp:8008
MS_HCTcontrol
HCTcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2692
MS_second_pass_peptide_identification
second-pass peptide identification: A putative identified peptide found in a second-pass search of pr...
Definition: cv.hpp:7315
UNIMOD_Label_13C_6_15N_4__Dimethyl
Label:13C(6)15N(4)+Dimethyl: Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:10354
MS_ions_series_considered
ions series considered: The ion series that were used during the calculation of the count (e...
Definition: cv.hpp:3673
UO_heat_conduction_unit
heat conduction unit: A unit which represents a standard measurement of the spontaneous transfer of t...
Definition: cv.hpp:13279
UNIMOD_dHex_2_Hex_4_HexNAc_4_Pent_1_
dHex(2)Hex(4)HexNAc(4)Pent(1): DHex(2) Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:11749
UNIMOD_HCysteinyl
HCysteinyl: S-homocysteinylation.
Definition: cv.hpp:11113
MS_quattro_micro
quattro micro: Waters oa-ToF based micro.
Definition: cv.hpp:781
MS_calibration_spectrum
calibration spectrum: A spectrum derived from a special calibration source, rather than from the prim...
Definition: cv.hpp:3340
MS_Triple_Quad_6500_
Triple Quad 6500+: SCIEX Triple Quad 6500+.
Definition: cv.hpp:8080
MS_TOPP_ProteinInference
TOPP ProteinInference: Infer proteins from a list of (high-confidence) peptides.
Definition: cv.hpp:6898
MS_SEQUEST_sort_by_dM
SEQUEST:sort by dM: Sort order of SEQUEST search results by the difference between a theoretically ca...
Definition: cv.hpp:3475
MS_TOPP_PeakPickerWavelet
TOPP PeakPickerWavelet: Finds mass spectrometric peaks with a wavelet algorithm in low-resoluted prof...
Definition: cv.hpp:6697
MS_GD_MS
GD-MS (glow discharge ionization): The formation of ions in the gas phase and from solid samples at t...
Definition: cv.hpp:1099
MS_frag__y_ion
frag: y ion: Fragmentation information, type of product: y ion.
Definition: cv.hpp:3934
MS_surface_induced_dissociation
surface-induced dissociation: Fragmentation that results from the collision of an ion with a surface...
Definition: cv.hpp:610
UNIMOD_Hex_3_HexNAc_5_Sulf_1_
Hex(3)HexNAc(5)Sulf(1): Hex(3) HexNAc(5) Sulf.
Definition: cv.hpp:11602
MS_chemical_compound
chemical compound: A substance formed by chemical union of two or more elements or ingredients in def...
Definition: cv.hpp:3193
MS_decoy_DB_type_reverse
decoy DB type reverse: Decoy type: Amino acids of protein sequences are used in reverse order...
Definition: cv.hpp:3868
MS_ProteomeDiscoverer_Spectrum_Grouper_Max_RT_Difference_OBSOLETE
ProteomeDiscoverer:Spectrum Grouper:Max RT Difference: Chromatographic window where precursors to be ...
Definition: cv.hpp:5149
UO_milligram_per_milliliter
milligram per milliliter: A mass unit density which is equal to mass of an object in milligrams divid...
Definition: cv.hpp:13018
MS_ProteomeDiscoverer_Source_Files_OBSOLETE
ProteomeDiscoverer:Source Files: Input pepXML files.
Definition: cv.hpp:5470
MS_excludes_supersede_includes
excludes supersede includes: A priority setting specifying that excluded targets have priority over t...
Definition: cv.hpp:3319
UO_angular_velocity_unit
angular velocity unit: A unit which is a standard measure of the rate of angular movement about an ax...
Definition: cv.hpp:12643
MS_quantile_normalization__peptides
quantile normalization, peptides: Normalization of peptide values to approach the same distribution...
Definition: cv.hpp:5848
MS_predicted_isoelectric_point
predicted isoelectric point: The pH of a solution at which a charged molecule would not migrate in an...
Definition: cv.hpp:3136
MS_LTQ_FT_Ultra
LTQ FT Ultra: LTQ FT Ultra.
Definition: cv.hpp:2128
UNIMOD_Cation_Cu_I_
Cation:Cu[I]: Replacement of proton by copper.
Definition: cv.hpp:9427
UNIMOD_Asp__Gly
Asp->Gly: Asp->Gly substitution.
Definition: cv.hpp:9502
MS_ProLuCID
ProLuCID: The SEQUEST-like sequence search engine ProLuCID, developed in the Yates Lab at the Scripps...
Definition: cv.hpp:8083
UNIMOD_Val__Cys
Val->Cys: Val->Cys substitution.
Definition: cv.hpp:10951
MS_NH3_neutral_loss_OBSOLETE
NH3 neutral loss: Neutral loss of ammonia.
Definition: cv.hpp:7660
UNIMOD_Ala__Phe
Ala->Phe: Ala->Phe substitution.
Definition: cv.hpp:10450
MS_curator_keyword
curator keyword: Keyword assigned by a data curator.
Definition: cv.hpp:6040
MS_Phenyx_User
Phenyx:User: The value of the user-defined peptide acceptance filter in Phenyx.
Definition: cv.hpp:4432
UNIMOD_Myristoyl_Delta_H__4_
Myristoyl+Delta:H(-4): (cis,cis-delta 5, delta 8)-tetradecadienoyl.
Definition: cv.hpp:8683
MS_alpha_cleavage_OBSOLETE
alpha-cleavage: A homolytic cleavage where the bond fission occurs between at the atom adjacent to th...
Definition: cv.hpp:1651
MS_time_lag_focusing
time lag focusing: Energy focusing in a time-of-flight mass spectrometer that is accomplished by intr...
Definition: cv.hpp:1261
UO_activity__of_a_radionuclide__unit
activity (of a radionuclide) unit: A unit which is a standard measure of the transformation (disinteg...
Definition: cv.hpp:12877
MS_scan
scan: Function or process of the mass spectrometer where it records a spectrum.
Definition: cv.hpp:1753
MS_MS_Numpress_positive_integer_compression
MS-Numpress positive integer compression: Compression using MS-Numpress positive integer compression...
Definition: cv.hpp:7231
MS_kinetic_method_OBSOLETE
kinetic method: An approach to determination of ion thermodynamic quantities by a bracketing procedur...
Definition: cv.hpp:1717
MS_plasma_desorption_ionization
plasma desorption ionization: The ionization of material in a solid sample by bombarding it with ioni...
Definition: cv.hpp:1621
MS_Mascot_C13_counts
Mascot:C13 counts: C13 peaks to use in peak detection.
Definition: cv.hpp:6151
MS_analyzer_type_OBSOLETE
analyzer type: The common name of the particular analyzer stage being described. Synonym of mass anal...
Definition: cv.hpp:130
MS_iTRAQ_reagent_114
iTRAQ reagent 114: The name of the sample labelled with the iTRAQ reagent 114.
Definition: cv.hpp:8167
UNIMOD_Cys__Oxoalanine
Cys->Oxoalanine: Oxoalanine.
Definition: cv.hpp:9178
MS_Citius_HRT
Citius HRT: LECO high resolution time-of-flight LC mass spectrometer.
Definition: cv.hpp:5662
UNIMOD_ICAT_D_2H_8_
ICAT-D:2H(8): Applied Biosystems original ICAT(TM) d8.
Definition: cv.hpp:8455
MS_mass_spectrometry_imaging
mass spectrometry imaging: A technique in which mass spectra are acquired in a spatially resolved man...
Definition: cv.hpp:7855
UNIMOD_dHex_2_Hex_4_HexNAc_5_
dHex(2)Hex(4)HexNAc(5): DHex(2) Hex(4) HexNAc(5).
Definition: cv.hpp:12463
UNIMOD_Maleimide_PEO2_Biotin
Maleimide-PEO2-Biotin: Maleimide-Biotin.
Definition: cv.hpp:9406
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_Sulf_1_
Hex(3)HexNAc(3)NeuGc(1)Sulf(1): Hex(3) HexNAc(3) NeuGc Sulf.
Definition: cv.hpp:12253
UNIMOD_dHex_1_Hex_3_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexNAc(1)Sulf(1): DHex Hex(3) HexNAc Sulf.
Definition: cv.hpp:11947
MS_ESA
ESA (electrostatic energy analyzer): A device consisting of conducting parallel plates, concentric cylinders or concentric spheres that separates charged particles according to their kinetic energy by means of an electric field that is constant in time.
Definition: cv.hpp:1069
UNIMOD_SulfurDioxide
SulfurDioxide: SulfurDioxide.
Definition: cv.hpp:11230
MS_FAIMS_compensation_voltage
FAIMS compensation voltage: The DC potential applied to the asymmetric waveform in FAIMS that compens...
Definition: cv.hpp:4984
UNIMOD_Iodoacetanilide
Iodoacetanilide: Iodoacetanilide derivative.
Definition: cv.hpp:11362
MS_Xevo_TQ_MS
Xevo TQ MS: Waters quadrupole based Xevo TQ MS.
Definition: cv.hpp:5626
UO_molar_volume_unit
molar volume unit: A unit which is a standard measure of the volume of a homogeneous substance contai...
Definition: cv.hpp:12664
MS_Maui
Maui: The Maltcms Graphical User Interface.
Definition: cv.hpp:7648
MS_PeptideShaker_PSM_confidence_type
PeptideShaker PSM confidence type: PeptideShaker quality criteria for the confidence of PSM&#39;s...
Definition: cv.hpp:7915
MS_Mascot_ShowDecoyMatches
Mascot:ShowDecoyMatches: If true, then the search results are against an automatically generated deco...
Definition: cv.hpp:4228
MS_nativeID_format
nativeID format (native spectrum identifier format): Describes how the native spectrum identifiers ar...
Definition: cv.hpp:2821
MS_emulsion
emulsion: State if the sample is in emulsion form.
Definition: cv.hpp:256
UNIMOD_Label_13C_6_15N_2__Acetyl
Label:13C(6)15N(2)+Acetyl: Acetyl_13C(6) 15N(2) Silac label.
Definition: cv.hpp:10048
UNIMOD_SMA
SMA: N-Succinimidyl-2-morpholine acetate.
Definition: cv.hpp:8488
MS_SEQUEST_ProcessCV
SEQUEST:ProcessCV: SEQUEST View / Process Input Parameters.
Definition: cv.hpp:3568
UNIMOD_Amidated
Amidated: Amidation.
Definition: cv.hpp:8425
MS_6410_Triple_Quad_LC_MS
6410 Triple Quad LC/MS (6410 Triple Quadrupole LC/MS): The 6410 Quadrupole LC/MS system is a Agilent ...
Definition: cv.hpp:1879
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuGc_1_
dHex(1)Hex(1)HexNAc(2)NeuGc(1): DHex Hex HexNAc(2) NeuGc.
Definition: cv.hpp:12010
UO_acceleration_unit
acceleration unit: A unit which is a standard measure of the rate of change of velocity in either spe...
Definition: cv.hpp:12640
MS_mass_limit_OBSOLETE
mass limit: The m/z value above which ions cannot be detected in a mass spectrometer.
Definition: cv.hpp:1345
MS_APPI_OBSOLETE
APPI (Atmostpheric Pressure Photoionization): Atmospheric pressure chemical ionization in which the r...
Definition: cv.hpp:991
MS_ICPL_reagent_4
ICPL reagent 4: The name of the sample labelled with the ICPL reagent 4.
Definition: cv.hpp:8119
MS_TagRecon
TagRecon: Tabb Lab software for reconciling sequence tags to a protein database.
Definition: cv.hpp:5005
UNIMOD_Cys__His
Cys->His: Cys->His substitution.
Definition: cv.hpp:10489
MS_UniProtKB_text_sequence_format
UniProtKB text sequence format: Text-based format used by UniProtKB for sequence entries.
Definition: cv.hpp:8278
UO_tesla
tesla: A magnetic flux density unit which is equal to one weber per square meter. ...
Definition: cv.hpp:13174
MS_SQ_Detector_2
SQ Detector 2: Waters quadrupole based SQ Detector 2.
Definition: cv.hpp:7111
UNIMOD_Cys__PyruvicAcid
Cys->PyruvicAcid: Pyruvic acid from N-term cys.
Definition: cv.hpp:9130
MS_Collision_cell_exit_potential
Collision cell exit potential: Potential difference between Q2 and Q3 in a triple quadrupole instrume...
Definition: cv.hpp:6094
MS_spectral_library_search
spectral library search: A search using a library of spectra.
Definition: cv.hpp:3439
MS_unstable_ion_OBSOLETE
unstable ion: An ion with sufficient energy to dissociate within the ion source.
Definition: cv.hpp:1558
MS_Phenyx_PepPvalue
Phenyx:PepPvalue: The p-value of a peptide sequence match in Phenyx.
Definition: cv.hpp:4438
UNIMOD_Asn__Pro
Asn->Pro: Asn->Pro substitution.
Definition: cv.hpp:10795
UNIMOD_Lys__Met
Lys->Met: Lys->Met substitution.
Definition: cv.hpp:9607
MS_ionization_efficiency
ionization efficiency: The ratio of the number of ions formed to the number of electrons, molecules or photons used.
Definition: cv.hpp:1597
MS_SILAC_quantitation_analysis
SILAC quantitation analysis: SILAC workflow (heavy, light, and sometimes medium peak).
Definition: cv.hpp:5761
MS_SRM_transition_ID
SRM transition ID: Identifier for an SRM transition in an external document describing additional inf...
Definition: cv.hpp:5743
MS_ProteomeDiscoverer_SEQUEST_Weight_of_c_Ions
ProteomeDiscoverer:SEQUEST:Weight of c Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5326
MS_experimental_condition__disease_
experimental condition &#39;disease&#39;: The experimental condition is &#39;disease&#39; in contrast to &#39;healthy&#39;...
Definition: cv.hpp:5692
MS_spectrum_identification_list_result_details
spectrum identification list result details: Information about the list of PSMs (SpectrumIdentificati...
Definition: cv.hpp:7606
MS_mass_spectrometry_OBSOLETE
mass spectrometry: The branch of science that deals with all aspects of mass spectrometers and the re...
Definition: cv.hpp:1153
UNIMOD_Met__Gly
Met->Gly: Met->Gly substitution.
Definition: cv.hpp:10753
MS_product_ion_spectrum
product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designed to record pro...
Definition: cv.hpp:2221
MS_add_others_OBSOLETE
add_others: OBSOLETE.
Definition: cv.hpp:4231
UNIMOD_GIST_Quat_2H_3_
GIST-Quat:2H(3): Quaternary amine labeling reagent heavy (+3amu) form, N-term & K.
Definition: cv.hpp:8572
MS_phosphoRS_score_threshold
phosphoRS score threshold: Threshold for phosphoRS score.
Definition: cv.hpp:7996
UO_pH
pH: A dimensionless concentration notation which denotes the acidity of a solution in terms of activi...
Definition: cv.hpp:13078
MS_Q_Tof_Premier
Q-Tof Premier: Waters oa-ToF based Q-Tof Premier.
Definition: cv.hpp:2416
UNIMOD_Hex_6_HexNAc_3_
Hex(6)HexNAc(3): Hex(6) HexNAc(3).
Definition: cv.hpp:11605
UNIMOD_Glu__Thr
Glu->Thr: Glu->Thr substitution.
Definition: cv.hpp:10576
MS_fragmentation_ion_type
fragmentation ion type: Type of fragment ion based on where the backbone breaks, such as a y ion or a...
Definition: cv.hpp:7213
MS_TMT_reagent_127
TMT reagent 127: The name of the sample labelled with the TMT reagent 127.
Definition: cv.hpp:8146
MS_MS_GF_Energy
MS-GF:Energy: MS-GF energy score.
Definition: cv.hpp:6445
MS_infrared_multiphoton_dissociation
infrared multiphoton dissociation: Multiphoton ionization where the reactant ion dissociates as a res...
Definition: cv.hpp:1114
MS_decoy_DB_type_randomized
decoy DB type randomized: Decoy type: Amino acids of protein sequences are randomized (keeping the or...
Definition: cv.hpp:3871
MS_SELDI
SELDI (surface enhanced laser desorption ionization): The formation of ionized species in the gas pha...
Definition: cv.hpp:1216
MS_V8_E
V8-E: Cleavage agent V8-E.
Definition: cv.hpp:4198
UNIMOD_Trp__Pro
Trp->Pro: Trp->Pro substitution.
Definition: cv.hpp:11008
MS_AAIndex_mass_table
AAIndex mass table: The masses used in the mass table are taken from AAIndex.
Definition: cv.hpp:4288
UNIMOD_Hex_4_HexNAc_2_Pent_1_
Hex(4)HexNAc(2)Pent(1): Hex(4) HexNAc(2) Pent.
Definition: cv.hpp:11512
MS_unified_atomic_mass_unit_OBSOLETE
unified atomic mass unit: A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground sta...
Definition: cv.hpp:964
UNIMOD_Dehydrated
Dehydrated: Dehydration.
Definition: cv.hpp:8470
MS_5800_TOF_TOF
5800 TOF/TOF: SCIEX 5800 TOF-TOF Analyzer.
Definition: cv.hpp:4693
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1): DHex Hex(2) HexA HexNAc Sulf.
Definition: cv.hpp:11953
UNIMOD_Hex_4_HexNAc_2_NeuAc_1_
Hex(4)HexNAc(2)NeuAc(1): Hex(4) HexNAc(2) NeuAc.
Definition: cv.hpp:11527
MS_nativeID_format__combined_spectra
nativeID format, combined spectra (native spectrum identifier format, combined spectra): Describes ho...
Definition: cv.hpp:8239
MS_search_tolerance_minus_value
search tolerance minus value:
Definition: cv.hpp:4480
MS_u_OBSOLETE
u (unified atomic mass unit): A non-SI unit of mass (u) defined as one twelfth of ^12 C in its ground...
Definition: cv.hpp:967
UNIMOD_Met__Asp
Met->Asp: Met->Asp substitution.
Definition: cv.hpp:10744
MS_nanoACQUITY_UPLC_System_with_Technology
nanoACQUITY UPLC System with Technology: Waters LC-system nanoACQUITY UPLC System with Technology...
Definition: cv.hpp:5557
MS_dwell_time
dwell time: The time spent gathering data across a peak.
Definition: cv.hpp:1960
MS_jet_separator
jet separator: A device that separates carrier gas from gaseous analyte molecules on the basis of dif...
Definition: cv.hpp:301
UNIMOD_Xle__Asn
Xle->Asn: Leu/Ile->Asn substitution.
Definition: cv.hpp:9589
MS_Genespring_MS
Genespring MS: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS data...
Definition: cv.hpp:2569
MS_TOPP_AdditiveSeries
TOPP AdditiveSeries: Computes an additive series to quantify a peptide in a set of samples...
Definition: cv.hpp:6775
UNIMOD_Xlink_DTSSP
Xlink:DTSSP: Monolink of DSP/DTSSP crosslinker to Lys or N-terminus.
Definition: cv.hpp:10399
MS_param__y_ion_H3PO4_DEPRECATED
param: y ion-H3PO4 DEPRECATED: Ion y-H3PO4: y ion with lost phosphoric acid.
Definition: cv.hpp:7645
MS_protein_name
protein name: A long name describing the function of the protein.
Definition: cv.hpp:3208
UNIMOD_dHex_3_Hex_2_HexA_1_HexNAc_2_Sulf_1_
dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1): DHex(3) Hex(2) HexA HexNAc(2) Sulf.
Definition: cv.hpp:12217
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuAc_1_
dHex(1)Hex(4)HexNAc(3)NeuAc(1): DHex Hex(4) HexNAc(3) NeuAc.
Definition: cv.hpp:11647
MS_frag__iTRAQ_4plex_reporter_ion
frag: iTRAQ 4plex reporter ion: Standard reporter ion for iTRAQ 4Plex. The value slot holds the integ...
Definition: cv.hpp:8305
structure for holding CV term info
Definition: cv.hpp:13381
UNIMOD_maleimide5
maleimide5: Maleimide-5-saccharide.
Definition: cv.hpp:10285
MS_Morpheus_summed_Morpheus_score
Morpheus:summed Morpheus score: Summed Morpheus score for protein groups.
Definition: cv.hpp:8290
MS_QTRAP_4500
QTRAP 4500: SCIEX QTRAP 4500.
Definition: cv.hpp:8035
MS_ProteomeDiscoverer_SEQUEST_Max_Identical_Modifications_Per_Peptide
ProteomeDiscoverer:SEQUEST:Max Identical Modifications Per Peptide: Maximum number of identical modif...
Definition: cv.hpp:5272
MS_detector_resolution
detector resolution: The resolving power of the detector to detect the smallest difference between tw...
Definition: cv.hpp:187
MS_LCQ_Deca
LCQ Deca: ThermoFinnigan LCQ Deca.
Definition: cv.hpp:2119
MS_scan_attribute
scan attribute: Scan properties that are associated with a value.
Definition: cv.hpp:1963
MS_frag__z_ion
frag: z ion: Fragmentation information, type of product: z ion.
Definition: cv.hpp:3970
MS_Ascore
Ascore: A-score for PTM site location at the PSM-level.
Definition: cv.hpp:6226
MS_MALDI_Synapt_G2_S_HDMS
MALDI Synapt G2-S HDMS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5575
MS_decoy_DB_details
decoy DB details: Details of decoy generation and database structure.
Definition: cv.hpp:4591
MS_single_identification_result_attribute
single identification result attribute: Attribute of a single identification item (as opposed to a li...
Definition: cv.hpp:8383
MS_TripleTOF_5600
TripleTOF 5600: SCIEX TripleTOF 5600, a quadrupole - quadrupole - time-of-flight mass spectrometer...
Definition: cv.hpp:3352
UNIMOD_Label_2H_10_
Label:2H(10): 2H(10) label.
Definition: cv.hpp:11170
MS_dpControl
dpControl: Bruker software for data acquisition.
Definition: cv.hpp:2677
MS_AXIMA_Performance_MALDI_TOF_TOF
AXIMA Performance MALDI-TOF/TOF: Shimadzu Biotech AXIMA Performance MALDI-TOF/TOF MS...
Definition: cv.hpp:2338
MS_Paragon__channel_to_use_as_denominator_in_ratios
Paragon: channel to use as denominator in ratios: The Paragon method setting that controls which labe...
Definition: cv.hpp:7585
MS_binary_data_type
binary data type: Encoding type of binary data specifying the binary representation and precision...
Definition: cv.hpp:2008
UNIMOD_Glu__Met
Glu->Met: Glu->Met substitution.
Definition: cv.hpp:10561
UNIMOD_Label_13C_6__Dimethyl
Label:13C(6)+Dimethyl: Dimethyl 13C(6) Silac label.
Definition: cv.hpp:10312
MS_DE
DE (delayed extraction): The application of the accelerating voltage pulse after a time delay in deso...
Definition: cv.hpp:1021
MS_product_ion_mobility
product ion mobility: The mobility of an MS2 product ion, as measured by ion mobility mass spectromet...
Definition: cv.hpp:6163
MS_Progenesis_peptide_raw_abundance
Progenesis:peptide raw abundance: The data type raw abundance for peptide produced by Progenesis LC-M...
Definition: cv.hpp:5935
MS_Andromeda_score
Andromeda:score: The probability based score of the Andromeda search engine.
Definition: cv.hpp:7306
UNIMOD_Acetyl
Acetyl: Acetylation.
Definition: cv.hpp:8422
UNIMOD_TMPP_Ac
TMPP-Ac: Tris(2,4,6-trimethoxyphenyl)phosphonium acetic acid N-hydroxysuccinimide ester derivative...
Definition: cv.hpp:10036
UNIMOD_dHex_1_Hex_3_HexNAc_2_
dHex(1)Hex(3)HexNAc(2): DHex Hex(3) HexNAc(2).
Definition: cv.hpp:12391
UNIMOD_NEMsulfurWater
NEMsulfurWater: N-ethylmaleimideSulfurWater.
Definition: cv.hpp:11233
MS_ProteinExtractor_PhenyxUniqueScore
ProteinExtractor:PhenyxUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4576
MS_Mascot_PTM_site_assignment_confidence_threshold
Mascot:PTM site assignment confidence threshold: Threshold for Mascot PTM site assignment confidence...
Definition: cv.hpp:7978
UNIMOD_ESP
ESP: ESP-Tag light d0.
Definition: cv.hpp:8593
MS_identification_file_format
identification file format: Attribute describing an identification file format.
Definition: cv.hpp:6679
MS_group_PSMs_by_sequence
group PSMs by sequence: Group PSMs by distinct peptide sequence ignoring modifications.
Definition: cv.hpp:7780
UNIMOD_Xlink_DMP_de
Xlink:DMP-de: Monolink of DMP crosslinker to Lys or N-terminus.
Definition: cv.hpp:10405
MS_cationized_molecule_OBSOLETE
cationized molecule: An ion formed by the association of a cation with a neutral molecule, M, for example [M+ Na]+ and [M + K]+. The terms quasi-molecular ion and pseudo-molecular ion should not be used.
Definition: cv.hpp:1492
UNIMOD_Tyr__Phe
Tyr->Phe: Tyr->Phe substitution.
Definition: cv.hpp:9844
MS_PA_OBSOLETE
PA (proton affinity): The proton affinity of a species M is defined as the negative of the enthalpy c...
Definition: cv.hpp:949
UO_byte
byte: An information unit which is equal to 8 bits.
Definition: cv.hpp:13189
UNIMOD_dHex_2_Hex_3_HexNAc_2_
dHex(2)Hex(3)HexNAc(2): DHex(2) Hex(3) HexNAc(2).
Definition: cv.hpp:12403
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_1_
dHex(1)Hex(3)HexNAc(3)Pent(1): DHex Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:11533
UNIMOD_DimethylamineGMBS
DimethylamineGMBS: Modified GMBS X linker for proteins.
Definition: cv.hpp:10225
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge4: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5401
UNIMOD_Acetyldeoxyhypusine
Acetyldeoxyhypusine: Acetyldeoxyhypusine.
Definition: cv.hpp:10441
MS_pulse_counting
pulse counting: Definition to do.
Definition: cv.hpp:529
MS_database_release_date_OBSOLETE
database release date: OBSOLETE: Use attribute in mzIdentML instead. Release date of the search datab...
Definition: cv.hpp:3397
MS_protein_group_list_attribute
protein group list attribute: Attribute describing a protein group list.
Definition: cv.hpp:6625
UO_absorbance_unit
absorbance unit: A dimensionless logarithmic unit assigned to a measure of absorbance of light throug...
Definition: cv.hpp:13297
MS_SpectraST_dot_bias
SpectraST:dot_bias: SpectraST measure of how much of the dot product is dominated by a few peaks...
Definition: cv.hpp:4495
UNIMOD_VIEVYQEQTGG
VIEVYQEQTGG: SUMOylation by SUMO-1 (formic acid cleavage).
Definition: cv.hpp:10195
MS_cyclotron
cyclotron: A device that uses an oscillating electric field and magnetic field to accelerate charged ...
Definition: cv.hpp:1273
MS_data_processing_start_time
data processing start time: The time that a data processing action was started.
Definition: cv.hpp:7597
MS_Bruker_BAF_nativeID_format
Bruker BAF nativeID format: Native format defined by scan=xsd:nonNegativeInteger. ...
Definition: cv.hpp:2836
MS_ms_level
ms level: Stages of ms achieved in a multi stage mass spectrometry experiment.
Definition: cv.hpp:1987
MS_Isotopomeric_ion_OBSOLETE
Isotopomeric ion: Isomeric ion having the same numbers of each isotopic atom but differing in their p...
Definition: cv.hpp:1522
UNIMOD_Phosphopropargyl
Phosphopropargyl: Phospho-propargylamine.
Definition: cv.hpp:10270
MS_Morpheus_Morpheus_score
Morpheus:Morpheus score: Morpheus score for PSMs.
Definition: cv.hpp:8287
MS_xi_score
xi:score: The xi result &#39;Score&#39;.
Definition: cv.hpp:7930
UNIMOD_Hex_1_HexNAc_3_NeuGc_1_
Hex(1)HexNAc(3)NeuGc(1): Hex HexNAc(3) NeuGc.
Definition: cv.hpp:12037
UNIMOD_Trp__Gln
Trp->Gln: Trp->Gln substitution.
Definition: cv.hpp:11011
MS_MGF_raw_scans_OBSOLETE
MGF raw scans: OBSOLETE: replaced by MS:1000798 (peak list raw scans): This term can hold the raw sca...
Definition: cv.hpp:4486
UNIMOD_Hep
Hep: Heptose.
Definition: cv.hpp:9346
MS_64_bit_float
64-bit float: 64-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2023
MS_diagnostic_ion_OBSOLETE
diagnostic ion: A product ion whose formation reveals structural or compositional information of its ...
Definition: cv.hpp:1501
MS_fraction_identifier
fraction identifier: Identier string that describes the sample fraction. This identifier should conta...
Definition: cv.hpp:3118
MS_SILAC_medium_reagent
SILAC medium reagent: The name of the sample labelled with the medium SILAC label.
Definition: cv.hpp:8134
MS_ProteomeDiscoverer_Number_of_input3_spectra
ProteomeDiscoverer:Number of input3 spectra: Number of spectra from 3+ precursor ions.
Definition: cv.hpp:5446
MS_interaction_score_derived_from_cross_linking
interaction score derived from cross-linking: Parent term for interaction scores derived from cross-l...
Definition: cv.hpp:8293
MS_DirecTag
DirecTag: Tabb Lab software for generating sequence tags from tandem mass spectra.
Definition: cv.hpp:5002
UNIMOD_Val__Gln
Val->Gln: Val->Gln substitution.
Definition: cv.hpp:10966
MS_PeptideShaker_protein_confidence_type
PeptideShaker protein confidence type: PeptideShaker quality criteria for the confidence of protein i...
Definition: cv.hpp:7921
MS_TargetAnalysis
TargetAnalysis: Bruker TargetAnalysis software.
Definition: cv.hpp:2731
MS_4000_QTRAP_OBSOLETE
4000 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 4000.
Definition: cv.hpp:3160
MS_contact_email
contact email: Email address of the contact person or organization.
Definition: cv.hpp:2266
UO_base_unit
base unit: A unit which is one of a particular measure to which all measures of that type can be rela...
Definition: cv.hpp:12631
UNIMOD_Arg__Asn
Arg->Asn: Arg->Asn substitution.
Definition: cv.hpp:10888
MS_protein_group_or_subset_relationship
protein group or subset relationship: Protein group or subset relationships.
Definition: cv.hpp:3610
UNIMOD_Gly__Val
Gly->Val: Gly->Val substitution.
Definition: cv.hpp:9559
MS_nier_johnson_geometry_OBSOLETE
nier-johnson geometry: An arrangement for a double-focusing mass spectrometer in which a deflection o...
Definition: cv.hpp:1297
UO_second
second: A time unit which is equal to the duration of 9 192 631 770 periods of the radiation correspo...
Definition: cv.hpp:12526
MS_Paragon__sample_type
Paragon: sample type: The Paragon method setting indicating the type of sample at the high level...
Definition: cv.hpp:7558
MS_stored_waveform_inverse_fourier_transform
stored waveform inverse fourier transform: A technique to create excitation waveforms for ions in FT-...
Definition: cv.hpp:1249
UNIMOD_Hex_2_HexNAc_3_Sulf_1_
Hex(2)HexNAc(3)Sulf(1): Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:12001
MS_intermediate_PSM_list
intermediate PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is...
Definition: cv.hpp:7612
MS_desorption_electrospray_ionization
desorption electrospray ionization: Combination of electrospray and desorption ionization method that...
Definition: cv.hpp:6316
MS_PDA_spectrum_OBSOLETE
PDA spectrum: Spectrum generated from a photodiode array detector (ultraviolet/visible spectrum)...
Definition: cv.hpp:2371
UNIMOD_Phenylisocyanate
Phenylisocyanate: Phenyl isocyanate.
Definition: cv.hpp:9199
MS_TOPP_SpecLibSearcher
TOPP SpecLibSearcher: Identifies peptide MS2 spectra by spectral matching with a searchable spectral ...
Definition: cv.hpp:6850
MS_Progenesis_automatic_alignment
Progenesis automatic alignment: Automatic RT alignment of Progenesis software.
Definition: cv.hpp:5851
MS_Sonar_Score
Sonar:Score: The Sonar score.
Definition: cv.hpp:4753
MS_ProteinScape_IntensityCoverage
ProteinScape:IntensityCoverage: The intensity coverage of the identified peaks in the spectrum calcul...
Definition: cv.hpp:4762
UNIMOD_Phe__Glu
Phe->Glu: Phe->Glu substitution.
Definition: cv.hpp:10591
MS_FIB
FIB (fast ion bombardment): The ionization of any species by the interaction of a focused beam of ion...
Definition: cv.hpp:1771
UNIMOD_EDEDTIDVFQQQTGG
EDEDTIDVFQQQTGG: Sumoylation by SUMO-2/3 after Cyanogen bromide (CNBr) cleavage.
Definition: cv.hpp:11383
MS_ProteomeDiscoverer_Highest_Charge_State
ProteomeDiscoverer:Highest Charge State: Maximum charge above which peptides are filtered out...
Definition: cv.hpp:5182
MS_Thermo_nativeID_format__combined_spectra
Thermo nativeID format, combined spectra: Thermo comma separated list of spectra that have been combi...
Definition: cv.hpp:8242
MS_SCiLS_software
SCiLS software: SCiLS software for data acquisition and analysis.
Definition: cv.hpp:7441
MS_MAT900XP_Trap
MAT900XP Trap: ThermoFinnigan MAT900XP Trap MS.
Definition: cv.hpp:730
MS_nanospray_inlet
nanospray inlet: Nanospray Inlet.
Definition: cv.hpp:1903
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_1_
dHex(1)Hex(2)HexNAc(2)NeuGc(1): DHex Hex(2) HexNAc(2) NeuGc.
Definition: cv.hpp:12094
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuAc_1_
dHex(1)Hex(1)HexNAc(1)NeuAc(1): DHex Hex HexNAc NeuAc.
Definition: cv.hpp:11899
MS_peak_list_raw_scans
peak list raw scans: A list of raw scans and or scan ranges used to generate a peak list...
Definition: cv.hpp:2929
MS_ProteomeDiscoverer_Mascot_Weight_of_A_Ions
ProteomeDiscoverer:Mascot:Weight of A Ions: Determines if to use A ions for spectrum matching...
Definition: cv.hpp:5485
MS_Single_Stage_Mass_Spectrometry
Single-Stage Mass Spectrometry (MS1 spectrum): Mass spectrum created by a single-stage MS experiment ...
Definition: cv.hpp:2209
UNIMOD_dHex_1_Hex_2_HexA_1_
dHex(1)Hex(2)HexA(1): DHex Hex(2) HexA.
Definition: cv.hpp:11482
UNIMOD_Ala__Gly
Ala->Gly: Ala->Gly substitution.
Definition: cv.hpp:9466
MS_search_engine_input_parameter
search engine input parameter: Search engine input parameter.
Definition: cv.hpp:6571
MS_Acquity_UPLC_PDA
Acquity UPLC PDA: Acquity UPLC Photodiode Array Detector.
Definition: cv.hpp:3001
UNIMOD_AEC_MAEC
AEC-MAEC: Aminoethylcysteine.
Definition: cv.hpp:9328
MS_ProteomeDiscoverer_Mascot_Weight_of_B_Ions
ProteomeDiscoverer:Mascot:Weight of B Ions: Determines if to use B ions for spectrum matching...
Definition: cv.hpp:5488
UNIMOD_dHex_1_Hex_1_HexNAc_1_NeuGc_1_
dHex(1)Hex(1)HexNAc(1)NeuGc(1): DHex Hex HexNAc NeuGc.
Definition: cv.hpp:11914
UNIMOD_dHex_1_Hex_5_HexNAc_4_Me_2_Pent_1_
dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1): DHex Hex(5) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:11776
MS_PIA_workflow_parameter
PIA workflow parameter: A parameter set for a single PIA analysis.
Definition: cv.hpp:7459
UO_kilogram_per_liter
kilogram per liter: A mass unit density which is equal to mass of an object in kilograms divided by t...
Definition: cv.hpp:13012
MS_frag__v_ion
frag: v ion: Fragmentation information, type of product: v ion.
Definition: cv.hpp:3991
MS_frag__c_ion___NH3
frag: c ion - NH3: Fragmentation information, type of product: c ion without ammonia.
Definition: cv.hpp:4795
MS_PureDisk
PureDisk: BrukerPureDisk software.
Definition: cv.hpp:2722
UO_conduction_unit
conduction unit: A unit which represents a standard measurement of the transmission of an entity thro...
Definition: cv.hpp:13273
UNIMOD_Delta_H_4_C_2_
Delta:H(4)C(2): Acetaldehyde +28.
Definition: cv.hpp:8854
UNIMOD_Tyr__His
Tyr->His: Tyr->His substitution.
Definition: cv.hpp:9853
MS_HCTultra
HCTultra: Bruker Daltonics&#39; HCTultra: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2611
MS_FDRScore_for_proteins
FDRScore for proteins: mzidLibrary FDRScore for proteins specifically obtained for distinct combinati...
Definition: cv.hpp:7387
MS_resolution_type_OBSOLETE
resolution type: Specify the nature of resolution for the mass analyzer. Resolution is usually either...
Definition: cv.hpp:139
MS_normalized_peptide_value
normalized peptide value: Normalized peptide value.
Definition: cv.hpp:5806
MS_protein_group_level_result_list_attribute
protein group-level result list attribute: Details describing a protein cluster.
Definition: cv.hpp:7507
UNIMOD_Thr__Trp
Thr->Trp: Thr->Trp substitution.
Definition: cv.hpp:10945
MS_AE_OBSOLETE
AE (appearance energy): The minimum energy that must be imparted to an atom or molecule to produce a ...
Definition: cv.hpp:847
UNIMOD_CarboxymethylDTT
CarboxymethylDTT: Carboxymethylated DTT modification of cysteine.
Definition: cv.hpp:10123
MS_counts_reporting
counts reporting: FeatureList of spectral counts.
Definition: cv.hpp:6655
MS_collision_energy_ramp_start
collision energy ramp start: Collision energy at the start of the collision energy ramp...
Definition: cv.hpp:6325
MS_sliding_average_smoothing
sliding average smoothing (moving average smoothing): Reduces intensity spikes by averaging each poin...
Definition: cv.hpp:2890
UNIMOD_Arg__Npo
Arg->Npo: Arginine replacement by Nitropyrimidyl ornithine.
Definition: cv.hpp:10051
MS_protein_group_level_p_value
protein group-level p-value: Estimation of the p-value for protein groups.
Definition: cv.hpp:7405
UNIMOD_PhosphoribosyldephosphoCoA
PhosphoribosyldephosphoCoA: Phosphoribosyl dephospho-coenzyme A.
Definition: cv.hpp:9160
MS_PeakPicker_OBSOLETE
PeakPicker: Finds mass spectrometric peaks in profile mass spectra.
Definition: cv.hpp:2806
UO_fraction
fraction: A dimensionless ratio unit which relates the part (the numerator) to the whole (the denomin...
Definition: cv.hpp:13063
MS_Scan_Function_OBSOLETE
Scan Function: Describes the type of mass analysis being performed. Two primary modes are: typical ac...
Definition: cv.hpp:151
MS_ProteoAnnotator_count_alternative_peptides
ProteoAnnotator:count alternative peptides: The count of the number of peptide sequences mapped to no...
Definition: cv.hpp:7717
UNIMOD_Hex_7_HexNAc_2_
Hex(7)HexNAc(2): Hex(7) HexNAc(2).
Definition: cv.hpp:11584
MS_peptide_sequence_level_result_list_statistic
peptide sequence-level result list statistic: Statistic pertaining to all peptide sequences in the li...
Definition: cv.hpp:8407
UNIMOD_Glu__Lys
Glu->Lys: Glu->Lys substitution.
Definition: cv.hpp:9523
MS_TOPP_noise_filter
TOPP noise filter: Noise filter component of the TOPP software.
Definition: cv.hpp:6682
UNIMOD_Arg
Arg: Addition of arginine due to transpeptidation.
Definition: cv.hpp:11143
MS_multichannel_plate
multichannel plate (microchannel plate detector): A thin plate that contains a closely spaced array o...
Definition: cv.hpp:511
MS_protein_modifications
protein modifications: Encoding of modifications of the protein sequence from the specified accession...
Definition: cv.hpp:3355
MS_ProteomeDiscoverer_SN_Threshold
ProteomeDiscoverer:SN Threshold: Signal-to-Noise ratio below which peaks are removed.
Definition: cv.hpp:5095
MS_eV_OBSOLETE
eV (electron volt): A non-SI unit of energy (eV) defined as the energy acquired by a particle contain...
Definition: cv.hpp:619
MS_selected_ion_m_z
selected ion m/z: Mass-to-charge ratio of an selected ion.
Definition: cv.hpp:2749
UO_parts_per_quadrillion
parts per quadrillion: A dimensionless concentration notation which denotes the amount of a given sub...
Definition: cv.hpp:13006
UNIMOD_dHex_2_Hex_3_HexNAc_3_
dHex(2)Hex(3)HexNAc(3): DHex(2) Hex(3) HexNAc(3).
Definition: cv.hpp:12421
UNIMOD_Phe__Met
Phe->Met: Phe->Met substitution.
Definition: cv.hpp:10603
MS_regular_expressions_for_a_GUID
).
Definition: cv.hpp:6982
MS_Phenyx_NumberOfMC
Phenyx:NumberOfMC: The number of missed cleavages of a peptide sequence in Phenyx.
Definition: cv.hpp:4441
UO_luminance_unit
luminance unit: A unit which is a standard measure of the luminous intensity impinging on a given are...
Definition: cv.hpp:12655
MS_Percolator_Validation_based_on
Percolator:Validation based on: Algorithm (e.g. q-value or PEP) used for calculation of the validatio...
Definition: cv.hpp:6568
UNIMOD_ESP_2H_10_
ESP:2H(10): ESP-Tag heavy d10.
Definition: cv.hpp:8596
UO_luminous_flux_unit
luminous flux unit: A unit which is a standard measure of the flow of radiant energy.
Definition: cv.hpp:12847
MS_sample_mass
sample mass: Total mass of sample used.
Definition: cv.hpp:112
UNIMOD_Isopropylphospho
Isopropylphospho: O-Isopropylphosphorylation.
Definition: cv.hpp:9082
MS_ion_to_photon_detector
ion-to-photon detector: A detector in which ions strike a conversion dynode to produce electrons that...
Definition: cv.hpp:1468
UNIMOD_Hydroxycinnamyl
Hydroxycinnamyl: Hydroxycinnamyl.
Definition: cv.hpp:9187
MS_Bruker_Agilent_YEP_format
Bruker/Agilent YEP format: Bruker/Agilent YEP file format.
Definition: cv.hpp:2158
id_list parentsIsA
Definition: cv.hpp:13390
MS_LCQ_Fleet
LCQ Fleet: LCQ Fleet.
Definition: cv.hpp:2194
MS_OMEGA_2001
OMEGA-2001: IonSpec OMEGA-2001 MS.
Definition: cv.hpp:754
MS_TDC
TDC (time-digital converter): A device for converting a signal of sporadic pluses into a digital repr...
Definition: cv.hpp:535
MS_p_value
p-value: P-value as result of one of the processing steps described. Specify in the description...
Definition: cv.hpp:6508
MS_transition_predicted_by_informatic_analysis
transition predicted by informatic analysis: The transition has been predicted by informatics softwar...
Definition: cv.hpp:3295
UNIMOD_NBS_13C_6_
NBS:13C(6): Shimadzu NBS-13C.
Definition: cv.hpp:8767
MS_param__b_ion_H2O_DEPRECATED
param: b ion-H2O DEPRECATED: Ion b-H2O if b significant and fragment includes STED.
Definition: cv.hpp:3757
UNIMOD_Asn__Lys
Asn->Lys: Asn->Lys substitution.
Definition: cv.hpp:9664
UNIMOD_Cation_Ni_II_
Cation:Ni[II]: Replacement of 2 protons by nickel.
Definition: cv.hpp:10252
MS_2E_Mass_Spectrum_OBSOLETE
2E Mass Spectrum: A mass spectrum obtained by setting the electric sector field E to twice the value ...
Definition: cv.hpp:1372
UNIMOD_dHex_3_Hex_3_HexNAc_3_Pent_1_
dHex(3)Hex(3)HexNAc(3)Pent(1): DHex(3) Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:11635
UNIMOD_Dioxidation
Dioxidation: Dihydroxy.
Definition: cv.hpp:9238
MS_IsobariQ
IsobariQ: A quantitative software package designed for analysis of IPTL, TMT and iTRAQ data...
Definition: cv.hpp:6919
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_NeuGc_1_
Hex(2)HexNAc(3)NeuAc(1)NeuGc(1): Hex(2) HexNAc(3) NeuAc NeuGc.
Definition: cv.hpp:12274
MS_FDRScore_OBSOLETE
FDRScore: A smoothing of the distribution of q-values calculated for PSMs from individual search engi...
Definition: cv.hpp:5878
UO_hertz
hertz: A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second...
Definition: cv.hpp:12814
MS_Voyager_DE_STR
Voyager-DE STR: Applied Biosystems/MDS SCIEX Voyager-DE STR MS.
Definition: cv.hpp:820
MS_nth_generation_product_ion_spectrum_OBSOLETE
nth generation product ion spectrum: The mass spectrum recorded from any mass spectrometer in which t...
Definition: cv.hpp:1435
MS_label_free_raw_feature_quantitation
label-free raw feature quantitation: Label-free raw feature quantitation.
Definition: cv.hpp:6343
UNIMOD_Hex_2_HexNAc_2_NeuGc_1_
Hex(2)HexNAc(2)NeuGc(1): Hex(2) HexNAc(2) NeuGc.
Definition: cv.hpp:12016
UNIMOD_Hex_2_HexNAc_4_NeuAc_1_
Hex(2)HexNAc(4)NeuAc(1): Hex(2) HexNAc(4) NeuAc.
Definition: cv.hpp:12220
UNIMOD_Lys__Cys
Lys->Cys: Lys->Cys substitution.
Definition: cv.hpp:10708
MS_filter_string
filter string: A string unique to Thermo instrument describing instrument settings for the scan...
Definition: cv.hpp:1990
MS_metastable_ion_OBSOLETE
metastable ion: An ion that is formed with internal energy higher than the threshold for dissociation...
Definition: cv.hpp:1525
UNIMOD_Tyr__Xle
Tyr->Xle: Tyr->Leu/Ile substitution.
Definition: cv.hpp:11056
UNIMOD_Cys__Tyr
Cys->Tyr: Cys->Tyr substitution.
Definition: cv.hpp:9484
MS_metabolic_labelling__natural_N__mainly_14N_
metabolic labelling: natural N (mainly 14N): Metabolic labelling: natural N (mainly 14N)...
Definition: cv.hpp:6478
MS_SpectraST_dot
SpectraST:dot: SpectraST dot product of two spectra, measuring spectral similarity.
Definition: cv.hpp:4492
MS_no_compression
no compression: No Compression.
Definition: cv.hpp:2185
MS_peak_intensity
peak intensity: Intensity of ions as measured by the height or area of a peak in a mass spectrum...
Definition: cv.hpp:241
MS_tube_lens_voltage
tube lens voltage: Potential difference setting of the tube lens in volts.
Definition: cv.hpp:3181
UNIMOD_Nitrosyl
Nitrosyl: S-nitrosylation.
Definition: cv.hpp:8899
MS_SEQUEST_SequencePartialFilter
SEQUEST:SequencePartialFilter:
Definition: cv.hpp:3442
MS_peptide_ratio
peptide ratio: Peptide ratio.
Definition: cv.hpp:3703
UNIMOD_Cation_Fe_II_
Cation:Fe[II]: Replacement of 2 protons by iron.
Definition: cv.hpp:10249
UNIMOD_Palmitoleyl
Palmitoleyl: Palmitoleyl.
Definition: cv.hpp:9250
MS_ACQUITY_UPLC
ACQUITY UPLC: Waters LC-system ACQUITY UPLC.
Definition: cv.hpp:5539
MS_OMSSA
OMSSA: Open Mass Spectrometry Search Algorithm was used to analyze the spectra.
Definition: cv.hpp:4672
MS_UltroTOF_Q
UltroTOF-Q: Bruker Daltonics&#39; UltroTOF-Q: ESI Q-TOF (MALDI optional).
Definition: cv.hpp:4864
UNIMOD_Label_15N_1_
Label:15N(1): 15N(1).
Definition: cv.hpp:10327
MS_Byonic_PEP
Byonic:PEP: Byonic posterior error probability.
Definition: cv.hpp:7084
MS_modification_specificity_protein_C_term
modification specificity protein C-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:6466
MS_peptide_sequence_level_global_confidence
peptide sequence-level global confidence: Estimation of the global confidence for distinct peptides o...
Definition: cv.hpp:7681
UNIMOD_Label_13C_1_2H_3__Oxidation
Label:13C(1)2H(3)+Oxidation: Oxidised methionine 13C(1)2H(3) SILAC label.
Definition: cv.hpp:10099
UNIMOD_HexNAc_1_Kdn_2_
HexNAc(1)Kdn(2): HexNAc Kdn(2).
Definition: cv.hpp:11851
UNIMOD_Lys__Glu
Lys->Glu: Lys->Glu substitution.
Definition: cv.hpp:9601
UNIMOD_Didehydro
Didehydro: 2-amino-3-oxo-butanoic_acid.
Definition: cv.hpp:9175
MS_search_time_taken
search time taken: The time taken to complete the search in seconds.
Definition: cv.hpp:3448
UNIMOD_NDA
NDA: Naphthalene-2,3-dicarboxaldehyde.
Definition: cv.hpp:9322
MS_intensity_array
intensity array: A data array of intensity values.
Definition: cv.hpp:1999
UNIMOD_FMNH
FMNH: Flavin mononucleotide.
Definition: cv.hpp:9193
MS_peptide_spectrum_match_scoring_algorithm
peptide spectrum match scoring algorithm: Algorithm used to score the match between a spectrum and a ...
Definition: cv.hpp:6148
MS_protein_description
protein description: The protein description line from the sequence entry in the source database FAST...
Definition: cv.hpp:3571
UNIMOD_dHex_1_Hex_3_HexNAc_3_
dHex(1)Hex(3)HexNAc(3): DHex Hex(3) HexNAc(3).
Definition: cv.hpp:12412
UNIMOD_His__Val
His->Val: His->Val substitution.
Definition: cv.hpp:10681
UNIMOD_4AcAllylGal
4AcAllylGal: 2,3,4,6-tetra-O-Acetyl-1-allyl-alpha-D-galactopyranoside modification of cysteine...
Definition: cv.hpp:10141
MS_nominal_mass_OBSOLETE
nominal mass: The mass of an ion or molecule calculated using the mass of the most abundant isotope o...
Definition: cv.hpp:934
MS_ion_energy_loss_spectrum_OBSOLETE
ion energy loss spectrum: A plot of the relative abundance of a beam or other collection of ions as a...
Definition: cv.hpp:1699
MS_Proteomics_Standards_Initiative_Mass_Spectrometry_Vocabularies
Proteomics Standards Initiative Mass Spectrometry Vocabularies: Proteomics Standards Initiative Mass ...
Definition: cv.hpp:100
MS_radical_ion_OBSOLETE
radical ion: An ion, either a cation or anion, containing unpaired electrons in its ground state...
Definition: cv.hpp:1549
MS_ion_selection_attribute
ion selection attribute: Ion selection properties that are associated with a value.
Definition: cv.hpp:1804
MS_feature_attribute
feature attribute: Attribute describing a feature.
Definition: cv.hpp:5740
MS_ProteomeDiscoverer_max_number_of_same_modifs
ProteomeDiscoverer:max number of same modifs: The maximum number of possible equal modifications per ...
Definition: cv.hpp:7273
UNIMOD_dHex_1_Hex_3_HexNAc_2_Pent_1_
dHex(1)Hex(3)HexNAc(2)Pent(1): DHex Hex(3) HexNAc(2) Pent.
Definition: cv.hpp:11506
UNIMOD_Cys__Phe
Cys->Phe: Cys->Phe substitution.
Definition: cv.hpp:9475
MS_FindPairs
FindPairs: Software e.g. for SILAC and 14N/15N workflow, part of the PeakQuant suite.
Definition: cv.hpp:6481
UO_dimensionless_unit
dimensionless unit: A unit which is a standard measure of physical quantity consisting of only a nume...
Definition: cv.hpp:13048
MS_Paragon__modified_data_dictionary_or_parameter_translation
Paragon: modified data dictionary or parameter translation: This metric detects if any changes have b...
Definition: cv.hpp:7591
MS_residual_gas_analyzer_OBSOLETE
residual gas analyzer: A mass spectrometer used to measure the composition and pressure of gasses in ...
Definition: cv.hpp:1207
MS_instrument_serial_number
instrument serial number: Serial Number of the instrument.
Definition: cv.hpp:2041
MS_Proteome_Discoverer
Proteome Discoverer: Thermo Scientific software for data analysis of peptides and proteins...
Definition: cv.hpp:2470
UNIMOD_pupylation
pupylation: Addition of GGE.
Definition: cv.hpp:11101
MS_PTM_localization_attribute
PTM localization attribute: Statistic derived from a post-translational modification localization ana...
Definition: cv.hpp:8365
MS_Atmostpheric_Pressure_Photoionization_OBSOLETE
Atmostpheric Pressure Photoionization: Atmospheric pressure chemical ionization in which the reactant...
Definition: cv.hpp:988
UNIMOD_FP_Biotin
FP-Biotin: 10-ethoxyphosphinyl-N-(biotinamidopentyl)decanamide.
Definition: cv.hpp:9007
UNIMOD_Hex_2_HexNAc_3_
Hex(2)HexNAc(3): Hex(2) HexNAc(3).
Definition: cv.hpp:11956
MS_SEQUEST_sort_by_dCn
SEQUEST:sort by dCn: Sort order of SEQUEST search results by the delta of the normalized correlation ...
Definition: cv.hpp:3472
UNIMOD_HexNAc_3_
HexNAc(3): HexNAc(3).
Definition: cv.hpp:11443
UO_newton
newton: A force unit which is equal to the force required to cause an acceleration of 1m/s2 of a mass...
Definition: cv.hpp:12820
UNIMOD_Hex_3_HexNAc_2_NeuAc_1_
Hex(3)HexNAc(2)NeuAc(1): Hex(3) HexNAc(2) NeuAc.
Definition: cv.hpp:11509
MS_protein_group_level_confidence
protein group-level confidence: Estimation of the global confidence of protein groups.
Definition: cv.hpp:7675
MS_product_ion_attribute
product ion attribute: Fragmentation information like ion types.
Definition: cv.hpp:3937
MS_ProteomeDiscoverer_SEQUEST_Weight_of_a_Ions
ProteomeDiscoverer:SEQUEST:Weight of a Ions: Uses a ions for spectrum matching with this relative fac...
Definition: cv.hpp:5320
UNIMOD_iTRAQ8plex_13C_6_15N_2_
iTRAQ8plex:13C(6)15N(2): Accurate mass for 115, 118, 119 & 121.
Definition: cv.hpp:9916
UO_kilodalton
kilodalton: A mass unit which is equal to one thousand daltons.
Definition: cv.hpp:13156
std::string fullName
the usual name for the resource (e.g. The PSI-MS Controlled Vocabulary).
Definition: cv.hpp:13362
MS_MALDI_LTQ_XL
MALDI LTQ XL: Thermo Scientific MALDI LTQ XL MS.
Definition: cv.hpp:2446
UNIMOD_dHex_2_Hex_4_HexNAc_3_
dHex(2)Hex(4)HexNAc(3): DHex(2) Hex(4) HexNAc(3).
Definition: cv.hpp:11587
MS_Agilent_software
Agilent software: Agilent software for data acquisition and analysis.
Definition: cv.hpp:2584
MS_TOPP_MapRTTransformer
TOPP MapRTTransformer: Applies retention time transformations to maps.
Definition: cv.hpp:6808
MS_electron_transfer_dissociation
electron transfer dissociation: A process to fragment ions in a mass spectrometer by inducing fragmen...
Definition: cv.hpp:2296
MS_absolute_quantity
absolute quantity: Absolute quantity in terms of real concentration or molecule copy number in sample...
Definition: cv.hpp:3718
UNIMOD_Delta_H_4_C_3_O_1_
Delta:H(4)C(3)O(1): Acrolein addition +56.
Definition: cv.hpp:8821
MS_V8_DE
V8-DE: Cleavage agent V8-DE.
Definition: cv.hpp:4195
MS_time_delayed_fragmentation_spectrum
time-delayed fragmentation spectrum: MSn spectrum in which the product ions are collected after a tim...
Definition: cv.hpp:2905
UNIMOD_DNCB_hapten
DNCB_hapten: Chemical reaction with 2,4-dinitro-1-chloro benzene (DNCB).
Definition: cv.hpp:11239
MS_photodissociation
photodissociation: A process wherein the reactant ion is dissociated as a result of absorption of one...
Definition: cv.hpp:1729
UNIMOD_Lys__Thr
Lys->Thr: Lys->Thr substitution.
Definition: cv.hpp:9595
UNIMOD_2_succinyl
2-succinyl: S-(2-succinyl) cysteine.
Definition: cv.hpp:10264
UNIMOD_dHex_1_Hex_1_HexNAc_3_Sulf_1_
dHex(1)Hex(1)HexNAc(3)Sulf(1): DHex Hex HexNAc(3) Sulf.
Definition: cv.hpp:11989
MS_SHA_1
SHA-1: SHA-1 (Secure Hash Algorithm-1) is a cryptographic hash function designed by the National Secu...
Definition: cv.hpp:2164
MS_ProteomeDiscoverer_Peptide_NTerminus
ProteomeDiscoverer:Peptide NTerminus: Static modification for the N terminal of the peptide used duri...
Definition: cv.hpp:5293
MS_SEQUEST_FormatAndLinks
SEQUEST:FormatAndLinks:
Definition: cv.hpp:3667
MS_ProteomeDiscoverer_3__Static_Modification_OBSOLETE
ProteomeDiscoverer:3. Static Modification: ProteomeDiscoverer&#39;s 3rd static post-translational modific...
Definition: cv.hpp:7282
UNIMOD_Gln__Asn
Gln->Asn: Gln->Asn substitution.
Definition: cv.hpp:10861
MS_electromagnetic_radiation_spectrum
electromagnetic radiation spectrum: A plot of the relative intensity of electromagnetic radiation as ...
Definition: cv.hpp:2953
UNIMOD_Val__Arg
Val->Arg: Val->Arg substitution.
Definition: cv.hpp:10969
MS_number_of_product_ion_observations
number of product ion observations: The number of times the specific product ion has been observed in...
Definition: cv.hpp:6970
UNIMOD_Trp__Met
Trp->Met: Trp->Met substitution.
Definition: cv.hpp:11002
MS_TOPP_MapAlignerIdentification
TOPP MapAlignerIdentification: Corrects retention time distortions between maps based on common pepti...
Definition: cv.hpp:6733
UNIMOD_dHex_2_Hex_3_HexNAc_6_
dHex(2)Hex(3)HexNAc(6): DHex(2) Hex(3) HexNAc(6).
Definition: cv.hpp:11830
UNIMOD_Cys__Arg
Cys->Arg: Cys->Arg substitution.
Definition: cv.hpp:9487
MS_Waters_nativeID_format__combined_spectra
Waters nativeID format, combined spectra: Waters comma separated list of spectra that have been combi...
Definition: cv.hpp:8245
MS_MS_GF_SpecEValue
MS-GF:SpecEValue: MS-GF spectral E-value.
Definition: cv.hpp:6448
MS_MaxQuant_peptide_counts__all_
MaxQuant:peptide counts (all): The data type peptide counts (all) produced by MaxQuant.
Definition: cv.hpp:5950
MS_m_z_array
m/z array: A data array of m/z values.
Definition: cv.hpp:1996
UNIMOD_Label_18O_2_
Label:18O(2): O18 label at both C-terminal oxygens.
Definition: cv.hpp:8794
MS_OMSSA_e_value_threshold
OMSSA e-value threshold: Threshold for OMSSA e-value for quality estimation.
Definition: cv.hpp:4588
MS_decoy_DB_from_EST_OBSOLETE
decoy DB from EST: Decoy database from an expressed sequence tag nucleotide sequence database...
Definition: cv.hpp:4135
MS_MRM_OBSOLETE
MRM (multiple reaction monitoring): This term is not recommended. See Selected Reaction Monitoring...
Definition: cv.hpp:454
MS_precursor_ion_scan_OBSOLETE
precursor ion scan: The specific scan function or process that will record a precursor ion spectrum...
Definition: cv.hpp:457
MS_OmniFlex
OmniFlex: Bruker Daltonics&#39; OmniFlex: MALDI TOF.
Definition: cv.hpp:757
UO_cubic_centimeter
cubic centimeter: A volume unit which is equal to one millionth of a cubic meter or 10^[-9] m^[3]...
Definition: cv.hpp:12787
MS_target_inclusion_exclusion_priority
target inclusion exclusion priority: A priority setting specifying whether included or excluded targe...
Definition: cv.hpp:3313
MS_ProteomeDiscoverer_Mascot_User_Name_OBSOLETE
ProteomeDiscoverer:Mascot:User Name: Name of the user submitting the Mascot search.
Definition: cv.hpp:5212
UO_gray
gray: An absorbed dose unit which is equal to the absorption of one joule of radiation energy by one ...
Definition: cv.hpp:12895
MS_Phenyx_Default_Parent_Charge
Phenyx:Default Parent Charge: The default parent charge value in Phenyx.
Definition: cv.hpp:4381
UNIMOD_Hex_3_HexNAc_3_NeuGc_1_
Hex(3)HexNAc(3)NeuGc(1): Hex(3) HexNAc(3) NeuGc.
Definition: cv.hpp:12208
UNIMOD_Xle__Cys
Xle->Cys: Leu/Ile->Cys substitution.
Definition: cv.hpp:10690
MS_Mascot_Instrument
Mascot:Instrument: Type of instrument used to acquire the data in the raw file.
Definition: cv.hpp:5224
MS_ATAQS
ATAQS: Software suite used to predict, select, and optimize transitions as well as analyze the result...
Definition: cv.hpp:3331
MS_Lys_C_P
Lys-C/P: Proteinase Lys-C/P.
Definition: cv.hpp:4183
MS_PSM_level_global_confidence
PSM-level global confidence: Estimation of the global confidence of peptide spectrum matches...
Definition: cv.hpp:7687
MS_confident_distinct_peptide_sequences
confident distinct peptide sequences: This counts the number of distinct peptide sequences. Multiple charge states and multiple modification states do NOT count as multiple sequences. The definition of &#39;confident&#39; must be qualified elsewhere.
Definition: cv.hpp:3601
MS_positive_ion_OBSOLETE
positive ion: An atomic or molecular species having a net positive electric charge.
Definition: cv.hpp:1543
MS_mass_trace_reporting__rectangles
mass trace reporting: rectangles: The mass trace of the features of this feature list specifies recta...
Definition: cv.hpp:5734
MS_autoflex_II_TOF_TOF
autoflex II TOF/TOF: Bruker Daltonics&#39; autoflex II TOF/TOF: MALDI TOF.
Definition: cv.hpp:4900
UNIMOD_dHex_3_Hex_1_HexNAc_3_Kdn_1_
dHex(3)Hex(1)HexNAc(3)Kdn(1): DHex(3) Hex HexNAc(3) Kdn.
Definition: cv.hpp:12244
UNIMOD_azole
azole: Formation of five membered aromatic heterocycle.
Definition: cv.hpp:11266
MS_ambiguous_residues
ambiguous residues: Children of this term describe ambiguous residues.
Definition: cv.hpp:4327
UNIMOD_Hex_5_HexNAc_4_
Hex(5)HexNAc(4): Biantennary.
Definition: cv.hpp:8977
UNIMOD_Propionyl
Propionyl: Propionate labeling reagent light form (N-term & K).
Definition: cv.hpp:8563
MS_Scaffold__Minimum_Protein_Probability
Scaffold: Minimum Protein Probability: Minimum protein probability a protein must have to be accepted...
Definition: cv.hpp:4969
UO_micromolal
micromolal: A molality unit which is equal to one millionth of a molal or 10^[-6] m...
Definition: cv.hpp:12706
UNIMOD_Ala__Lys
Ala->Lys: Ala->Lys substitution.
Definition: cv.hpp:10459
UNIMOD_Glucuronyl
Glucuronyl: Hexuronic acid.
Definition: cv.hpp:8554
UNIMOD_Hex_4_HexNAc_1_
Hex(4)HexNAc(1): Hex(4) HexNAc.
Definition: cv.hpp:11932
MS_frag__y_ion___H2O
frag: y ion - H2O: Fragmentation information, type of product: y ion without water.
Definition: cv.hpp:3943
MS_source_attribute
source attribute: Property of a source device that need a value.
Definition: cv.hpp:1894
MS_CF_FAB
CF-FAB (continuous flow fast atom bombardment): Fast atom bombardment ionization in which the analyte...
Definition: cv.hpp:283
MS_Profound_z_value
Profound:z value: The Profound z value.
Definition: cv.hpp:4741
UO_angular_acceleration_unit
angular acceleration unit: A unit which is a standard measure of the rate of change of angular veloci...
Definition: cv.hpp:12646
UNIMOD_Lys__AminoadipicAcid
Lys->AminoadipicAcid: Alpha-amino adipic acid.
Definition: cv.hpp:9127
UNIMOD_mTRAQ_13C_3_15N_1_
mTRAQ:13C(3)15N(1): MTRAQ medium.
Definition: cv.hpp:10111
UNIMOD_Cyano
Cyano: Cyano.
Definition: cv.hpp:9271
UO_gram_per_cubic_centimeter
gram per cubic centimeter: A mass unit density which is equal to mass of an object in grams divided b...
Definition: cv.hpp:12748
MS_flexImaging
flexImaging: Bruker software for data analysis.
Definition: cv.hpp:2683
MS_Surveyor_PDA
Surveyor PDA: Surveyor PDA.
Definition: cv.hpp:2380
MS_number_of_decoy_sequences
number of decoy sequences: The number of decoy sequences, if the concatenated target-decoy approach i...
Definition: cv.hpp:7603
UNIMOD_dHex_2_Hex_5_HexNAc_4_
dHex(2)Hex(5)HexNAc(4): DHex(2) Hex(5) HexNAc(4).
Definition: cv.hpp:11767
UNIMOD_MercaptoEthanol
MercaptoEthanol: 2-OH-ethyl thio-Ser.
Definition: cv.hpp:10186
MS_IsoProbe
IsoProbe: Waters IsoProbe MS.
Definition: cv.hpp:703
MS_frag__a_ion
frag: a ion: Fragmentation information, type of product: a ion.
Definition: cv.hpp:3967
MS_constant_neutral_loss_scan_OBSOLETE
constant neutral loss scan: Spectrum of all precursor ions that undergo a selected m/z decrement...
Definition: cv.hpp:1378
MS_SEQUEST_SQT_format
SEQUEST SQT format: Source file for this mzIdentML was in SEQUEST SQT format.
Definition: cv.hpp:4930
UNIMOD_dHex_3_Hex_3_HexNAc_3_NeuAc_1_
dHex(3)Hex(3)HexNAc(3)NeuAc(1): DHex(3) Hex(3) HexNAc(3) NeuAc.
Definition: cv.hpp:12361
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_
Hex(1)HexNAc(2)NeuAc(2): Hex HexNAc(2) NeuAc(2).
Definition: cv.hpp:12070
UNIMOD_Dipyrrolylmethanemethyl
Dipyrrolylmethanemethyl: Dipyrrolylmethanemethyl.
Definition: cv.hpp:9214
MS_z
z (charge state): The charge state of the ion, single or multiple and positive or negatively charged...
Definition: cv.hpp:238
MS_Bruker_Daltonics_esquire_series
Bruker Daltonics esquire series: Bruker Daltonics&#39; esquire series.
Definition: cv.hpp:4846
MS_TSQ_Quantum_Ultra_AM
TSQ Quantum Ultra AM: Thermo Scientific TSQ Quantum Ultra AM.
Definition: cv.hpp:2746
MS_mass_resolving_power_OBSOLETE
mass resolving power: In a mass spectrum, the observed mass divided by the difference between two mas...
Definition: cv.hpp:952
MS_increasing_m_z_scan
increasing m/z scan: Low to high direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:433
MS_detector_potential
detector potential: Detector potential difference in volts.
Definition: cv.hpp:7108
MS_MS_MS_OBSOLETE
MS/MS (mass spectrometry/mass spectrometry): The acquisition, study and spectra of the electrically c...
Definition: cv.hpp:1162
MS_Conventional_ion_OBSOLETE
Conventional ion: A radical cation or anion in which the charge site and the unpaired electron spin a...
Definition: cv.hpp:1498
MS_SEQUEST_ShowFragmentIons
SEQUEST:ShowFragmentIons: Flag indicating that fragment ions should be shown.
Definition: cv.hpp:3451
MS_collision_energy
collision energy: Energy for an ion experiencing collision with a stationary gas particle resulting i...
Definition: cv.hpp:250
MS_32_bit_float
32-bit float: 32-bit precision little-endian floating point conforming to IEEE-754.
Definition: cv.hpp:2017
UNIMOD_Methyl_Deamidated
Methyl+Deamidated: Deamidation followed by a methylation.
Definition: cv.hpp:9418
MS_value_between_0_and_1_inclusive
value between 0 and 1 inclusive: Value range for probabilities.
Definition: cv.hpp:7207
MS_wavelength_OBSOLETE
wavelength: The distance between two peaks of the emitted laser beam.
Definition: cv.hpp:3073
MS_frag__precursor_ion
frag: precursor ion: Fragmentation information, type of product: precursor ion.
Definition: cv.hpp:4816
MS_frag__TMT_reporter_ion
frag: TMT reporter ion: Standard reporter ion for TMT. The value slot holds the integer mass of the T...
Definition: cv.hpp:8311
MS_box_smoothing
box smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with two o...
Definition: cv.hpp:2884
MS_peak_targeting_suitability_rank
peak targeting suitability rank: Ordinal specifying the rank of a peak in a spectrum in terms of suit...
Definition: cv.hpp:3274
UO_electrical_conduction_unit
electrical conduction unit: A unit which represents a standard measurement of the movement of electri...
Definition: cv.hpp:13276
MS_LCMS_2010A
LCMS-2010A: Shimadzu Scientific Instruments LCMS-2010A MS.
Definition: cv.hpp:2326
UNIMOD_dHex_1_Hex_1_HexA_1_HexNAc_3_
dHex(1)Hex(1)HexA(1)HexNAc(3): DHex Hex HexA HexNAc(3).
Definition: cv.hpp:12046
UNIMOD_iTRAQ8plex
iTRAQ8plex: Representative mass and accurate mass for 113, 114, 116 & 117.
Definition: cv.hpp:9913
UO_roentgen
roentgen: An exposure unit which is equal to the amount of radiation required to liberate positive an...
Definition: cv.hpp:12901
MS_protein_group_level_probability
protein group-level probability: Probability that at least one of the members of a group of protein s...
Definition: cv.hpp:7420
MS_SEQUEST_summary
SEQUEST summary: Source file for this mzIdentML was a SEQUEST summary page (proteins).
Definition: cv.hpp:4009
UNIMOD_Gly__Ser
Gly->Ser: Gly->Ser substitution.
Definition: cv.hpp:9550
MS_SEQUEST_NormalizeXCorrValues
SEQUEST:NormalizeXCorrValues:
Definition: cv.hpp:3424
UNIMOD_Tyr__Gln
Tyr->Gln: Tyr->Gln substitution.
Definition: cv.hpp:11041
MS_Varian_instrument_model
Varian instrument model: Varian instrument model.
Definition: cv.hpp:1915
MS_fragment_ion_intensity
fragment ion intensity (product ion intensity): The intensity of a single product ion...
Definition: cv.hpp:3958
UNIMOD_dHex_3_Hex_2_HexNAc_3_
dHex(3)Hex(2)HexNAc(3): DHex(3) Hex(2) HexNAc(3).
Definition: cv.hpp:12187
MS_TOPP_CompNovoCID
TOPP CompNovoCID: Performs a peptide/protein identification with the CompNovo engine in collision-ind...
Definition: cv.hpp:6826
MS_PTM_scoring_algorithm_version
PTM scoring algorithm version: Version of the post-translational modification scoring algorithm...
Definition: cv.hpp:6181
MS_SEQUEST_Fast
SEQUEST:Fast:
Definition: cv.hpp:3685
UNIMOD_His__Asp
His->Asp: His->Asp substitution.
Definition: cv.hpp:9049
MS_Progenesis_peptide_count
Progenesis:peptide count: The data type peptide count produced by Progenesis LC-MS.
Definition: cv.hpp:5941
UNIMOD_Ethanedithiol
Ethanedithiol: EDT.
Definition: cv.hpp:8815
UNIMOD_Ser__Gln
Ser->Gln: Ser->Gln substitution.
Definition: cv.hpp:10915
UNIMOD_Pro__Xle
Pro->Xle: Pro->Leu/Ile substitution.
Definition: cv.hpp:9697
MS_ProteinPilot_Software
ProteinPilot Software: SCIEX or Applied Biosystems|MDS SCIEX software for protein ID and quant...
Definition: cv.hpp:2506
MS_analog_digital_converter
analog-digital converter: Analog-to-digital converter (abbreviated ADC, A/D or A to D) is an electron...
Definition: cv.hpp:523
UNIMOD_Hex_5_Phos_1_
Hex(5)Phos(1): Hex(5) Phos.
Definition: cv.hpp:11941
MS_mzML_unique_identifier
mzML unique identifier: Native format defined by mzMLid=xsd:IDREF.
Definition: cv.hpp:4837
MS_NBRF_PIR
NBRF PIR: The NBRF PIR was used as format.
Definition: cv.hpp:4309
UNIMOD_Trimethyl_2H_9_
Trimethyl:2H(9): 3-fold methylation with deuterated methyl groups.
Definition: cv.hpp:11293
MS_Negative_Ion_chemical_ionization
Negative Ion chemical ionization: Chemical ionization that results in the formation of negative ions...
Definition: cv.hpp:1171
MS_protein_group_level_e_value
protein group-level e-value: Estimation of the e-value for protein groups.
Definition: cv.hpp:7408
UNIMOD_Met_loss
Met-loss: Removal of initiator methionine from protein N-terminus.
Definition: cv.hpp:9976
UNIMOD_HexNAc_2_NeuGc_1_
HexNAc(2)NeuGc(1): HexNAc(2) NeuGc.
Definition: cv.hpp:11860
MS_protein_group_level_q_value
protein group-level q-value: Estimation of the q-value for protein groups.
Definition: cv.hpp:7411
UNIMOD_Hex_5_Phos_3_
Hex(5)Phos(3): Hex(5) Phos(3).
Definition: cv.hpp:12019
MS_co_author
co-author: One of a set of authors associated with a publication or release.
Definition: cv.hpp:6394
UNIMOD_HexNAc_2_
HexNAc(2): HexNAc2.
Definition: cv.hpp:8704
MS_Shimadzu_MALDI_7090
Shimadzu MALDI-7090: Shimadzu MALDI-7090: MALDI-TOF-TOF.
Definition: cv.hpp:7438
UNIMOD_Tyr__Val
Tyr->Val: Tyr->Val substitution.
Definition: cv.hpp:11050
UNIMOD_ethylamino
ethylamino: Ethyl amino.
Definition: cv.hpp:10183
MS_product_interpretation_rank
product interpretation rank: The integer rank given an interpretation of an observed product ion...
Definition: cv.hpp:3334
MS_6140_Quadrupole_LC_MS
6140 Quadrupole LC/MS: The 6140 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1858
MS_TOPP_FeatureLinkerLabeled
TOPP FeatureLinkerLabeled: Groups corresponding isotope-labeled features in a feature map...
Definition: cv.hpp:6814
MS_external_reference_keyword
external reference keyword: Free text attribute that can enrich the information about an entity...
Definition: cv.hpp:6031
MS_Bruker_XML_format
Bruker XML format: Bruker data exchange XML format.
Definition: cv.hpp:4018
UNIMOD_dHex_1_Hex_4_HexNAc_2_Pent_1_
dHex(1)Hex(4)HexNAc(2)Pent(1): DHex Hex(4) HexNAc(2) Pent.
Definition: cv.hpp:11521
UNIMOD_Propiophenone
Propiophenone: Propiophenone.
Definition: cv.hpp:11194
MS_TOPP_spectra_filter
TOPP spectra filter: Spectra filter component of the TOPP software.
Definition: cv.hpp:6700
UO_magnetic_flux_density_unit
magnetic flux density unit: A unit which is a standard measure of the strength of a magnetic field...
Definition: cv.hpp:13171
MS_protein_group_level_identification_attribute
protein group-level identification attribute: Protein group level information.
Definition: cv.hpp:7330
MS_consensus_result
consensus result: Indicates a consensus result from several search engine runs.
Definition: cv.hpp:7237
MS_impact_HD
impact HD: Bruker Daltonics&#39; impact HD.
Definition: cv.hpp:8302
UNIMOD_dHex_2_Hex_1_HexNAc_3_
dHex(2)Hex(1)HexNAc(3): DHex(2) Hex HexNAc(3).
Definition: cv.hpp:12034
MS_FileMerger
FileMerger: Merges several MS files into one file.
Definition: cv.hpp:2791
MS_PSM_level_global_FNR
PSM-level global FNR: Estimation of the global false negative rate of peptide spectrum matches...
Definition: cv.hpp:7684
MS_DB_PI_filter
DB PI filter: Filtering applied specifically by predicted protein isoelectric focussing point (pI)...
Definition: cv.hpp:3415
MS_Conversion_to_mzXML
Conversion to mzXML: Conversion of a file format to Institute of Systems Biology mzXML file format...
Definition: cv.hpp:2092
UNIMOD_Hex_4_HexNAc_3_NeuAc_1_
Hex(4)HexNAc(3)NeuAc(1): Hex(4) HexNAc(3) NeuAc.
Definition: cv.hpp:12427
MS_ProteinExtractor_SequestUniqueScore
ProteinExtractor:SequestUniqueScore: In the final result each protein must have at least one peptide ...
Definition: cv.hpp:4552
MS_WIFF_nativeID_format
WIFF nativeID format: Native format defined by sample=xsd:nonNegativeInteger period=xsd:nonNegativeIn...
Definition: cv.hpp:2830
MS_CAD
CAD (collision-induced dissociation): The dissociation of an ion after collisional excitation...
Definition: cv.hpp:592
MS_ProteomeDiscoverer_SEQUEST_Weight_of_d_Ions
ProteomeDiscoverer:SEQUEST:Weight of d Ions: Uses c ions for spectrum matching with this relative fac...
Definition: cv.hpp:5329
MS_t_test
t-test: Perform a t-test (two groups). Specify in string value, whether paired / unpaired, variance equal / different, one- / two-sided version is performed.
Definition: cv.hpp:6502
MS_minimum_information_standard
minimum information standard: A specification of a minimum amount of information needed to reproduce ...
Definition: cv.hpp:3253
MS_radial_ejection_linear_ion_trap
radial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the...
Definition: cv.hpp:397
UNIMOD_MurNAc
MurNAc: N-Acetylmuramic acid.
Definition: cv.hpp:11371
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge2: Standard high confidence XCorr paramete...
Definition: cv.hpp:5371
MS_Conversion_to_dta
Conversion to dta: Conversion to dta format.
Definition: cv.hpp:2740
MS_APEX_value
APEX value: The APEX value of protein abundance, produced from the APEX software. ...
Definition: cv.hpp:5974
MS_TOPP_InspectAdapter
TOPP InspectAdapter: Identifies MS2 spectra using the external program Inspect.
Definition: cv.hpp:6832
UO_rad
rad: An absorbed dose unit which is equal to 0.01 gray (Gy).
Definition: cv.hpp:12898
MS_ProteomeDiscoverer_SEQUEST_CTerminal_Modification
ProteomeDiscoverer:SEQUEST:CTerminal Modification: Dynamic C-terminal modification that is used durin...
Definition: cv.hpp:5266
MS_signal_to_noise_array
signal to noise array: A data array of signal-to-noise values.
Definition: cv.hpp:2005
UNIMOD_Hex_1_HexA_1_
Hex(1)HexA(1): Hex HexA.
Definition: cv.hpp:11425
UNIMOD_Lys__Allysine
Lys->Allysine: Lysine oxidation to aminoadipic semialdehyde.
Definition: cv.hpp:9058
MS_ProteinScape_PFFSolverScore
ProteinScape:PFFSolverScore: The ProteinSolver score stored by ProteinScape.
Definition: cv.hpp:4759
MS_modified_nucleic_acid_sequence
modified nucleic acid sequence: Specification of the modified nucleic acid sequence. The value slot should hold the DNA or RNA sequence.
Definition: cv.hpp:6376
MS_Waters_raw_format
Waters raw format: Waters data file format found in a Waters RAW directory, generated from an MS acqu...
Definition: cv.hpp:2032
MS_peptide_level_scoring
peptide-level scoring: Peptide-level scoring performed.
Definition: cv.hpp:7762
MS_OpenXQuest_wTIC
OpenXQuest:wTIC: OpenXQuest&#39;s weighted percent of total ion current subscore.
Definition: cv.hpp:8359
UNIMOD_Cresylphosphate
Cresylphosphate: O-toluyl-phosphorylation.
Definition: cv.hpp:11077
MS_fringing_field
fringing field: The electric or magnetic field that extends from the edge of a sector, lens or other ion optics element.
Definition: cv.hpp:1339
UNIMOD_Trp__Ser
Trp->Ser: Trp->Ser substitution.
Definition: cv.hpp:9829
UO_kilogram_per_hectare
kilogram per hectare: An area density unit which is equal to the mass of an object in kilograms divid...
Definition: cv.hpp:13339
MS_ProteinScape_SequestMetaScore
ProteinScape:SequestMetaScore: The SEQUEST meta score calculated by ProteinScape from the original SE...
Definition: cv.hpp:4765
UNIMOD_Label_2H_4_13C_1_
Label:2H(4)13C(1): Label:2H(4)13C(1).
Definition: cv.hpp:11173
UNIMOD_Phe__Arg
Phe->Arg: Phe->Arg substitution.
Definition: cv.hpp:10615
MS_ProteomeDiscoverer_Maximum_Peptides_Output
ProteomeDiscoverer:Maximum Peptides Output: Maximum number of peptide matches reported per spectrum...
Definition: cv.hpp:5281
MS_MaxQuant_Phospho__STY__Probabilities
MaxQuant:Phospho (STY) Probabilities: The Phospho (STY) Probabilities from MaxQuant software...
Definition: cv.hpp:6211
UNIMOD_His__Lys
His->Lys: His->Lys substitution.
Definition: cv.hpp:10669
MS_onium_ion_OBSOLETE
onium ion: A positively charged hypervalent ion of the nonmetallic elements. Examples are the methoni...
Definition: cv.hpp:1537
UNIMOD_Ahx2_Hsl
Ahx2+Hsl: C-terminal homoserine lactone and two aminohexanoic acids.
Definition: cv.hpp:10378
MS_ProteomeDiscoverer_Source_Files_old_OBSOLETE
ProteomeDiscoverer:Source Files old: Input pepXML files (old).
Definition: cv.hpp:5473
MS_Spectrum_Mill_for_MassHunter_Workstation
Spectrum Mill for MassHunter Workstation: Software for protein identification and characterization of...
Definition: cv.hpp:2578
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_1_
dHex(1)Hex(5)HexNAc(4)Sulf(1): DHex Hex(5) HexNAc(4) Sulf.
Definition: cv.hpp:11725
MS_OpenXQuest_combined_score
OpenXQuest:combined score: OpenXQuest&#39;s combined score for a cross-link spectrum match.
Definition: cv.hpp:8344
MS_protein_short_name
protein short name: A short name or symbol of a protein (e.g., HSF 1 or HSF1_HUMAN).
Definition: cv.hpp:3199
MS_MaxQuant_PEP
MaxQuant:PEP: The data type PEP (posterior error probability) produced by MaxQuant.
Definition: cv.hpp:5959
MS_SQID_protein_score
SQID:protein score: The SQID result &#39;protein score&#39;.
Definition: cv.hpp:5923
MS_peptide_sequence_level_identification_attribute
peptide sequence-level identification attribute: Peptide level information.
Definition: cv.hpp:3622
UO_picomolar
picomolar: A unit of molarity which is equal to 10^[-12] M.
Definition: cv.hpp:12694
UNIMOD_EQAT
EQAT: EAPTA d0.
Definition: cv.hpp:8806
MS_four_sample_run
four sample run: The raw file contains the run of four samples (e.g. 4-plex iTraq).
Definition: cv.hpp:5719
MS_Percolator
Percolator: Percolator.
Definition: cv.hpp:4717
UNIMOD_AEC_MAEC_2H_4_
AEC-MAEC:2H(4): Deuterium cysteamine modification to S or T.
Definition: cv.hpp:10006
MS_solution
solution: State if the sample is in solution form.
Definition: cv.hpp:268
MS_PIA
PIA: PIA - Protein Inference Algorithms, a toolbox for protein inference and identification analysis...
Definition: cv.hpp:7453
UNIMOD_Label_13C_9_15N_1_
Label:13C(9)15N(1): 13C(9) 15N(1) Silac label.
Definition: cv.hpp:8884
MS_search_tolerance_specification
search tolerance specification: Specification of the search tolerance.
Definition: cv.hpp:4474
MS_LTQ_Velos
LTQ Velos: Thermo Scientific LTQ Velos MS.
Definition: cv.hpp:3109
UNIMOD_Hex_1_Pent_1_
Hex(1)Pent(1): Hex Pent.
Definition: cv.hpp:11422
UNIMOD_C8_QAT
C8-QAT: [3-(2,5)-Dioxopyrrolidin-1-yloxycarbonyl)-propyl]dimethyloctylammonium.
Definition: cv.hpp:9388
UNIMOD_dHex_1_Hex_4_HexNAc_3_NeuGc_1_
dHex(1)Hex(4)HexNAc(3)NeuGc(1): DHex Hex(4) HexNAc(3) NeuGc.
Definition: cv.hpp:11662
UNIMOD_Label_2H_3_
Label:2H(3): Trideuteration.
Definition: cv.hpp:8872
MS_post_source_decay
post-source decay: A technique specific to reflectron time-of-flight mass spectrometers where product...
Definition: cv.hpp:604
UNIMOD_dHex_2_Hex_2_HexNAc_2_Kdn_1_
dHex(2)Hex(2)HexNAc(2)Kdn(1): DHex(2) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:12130
MS_SEQUEST_SelectDefault
SEQUEST:SelectDefault:
Definition: cv.hpp:3739
UNIMOD_DFDNB
DFDNB: Addition of DFDNB crosslinker.
Definition: cv.hpp:10033
UNIMOD_OxProBiotin
OxProBiotin: Oxidized Proline biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8635
UNIMOD_Glu__Pro
Glu->Pro: Glu->Pro substitution.
Definition: cv.hpp:10567
UNIMOD_Archaeol
Archaeol: S-diphytanylglycerol diether.
Definition: cv.hpp:9196
UNIMOD_Carbofuran
Carbofuran: 2,3-dihydro-2,2-dimethyl-7-benzofuranol N-methyl carbamate.
Definition: cv.hpp:10294
MS_PSI_mzData_format
PSI mzData format: Proteomics Standards Inititative mzData file format.
Definition: cv.hpp:2149
MS_TOPP_MapAlignerSpectrum
TOPP MapAlignerSpectrum: Corrects retention time distortions between maps by spectrum alignment...
Definition: cv.hpp:6739
MS_ProteomeDiscoverer_Static_Modification
ProteomeDiscoverer:Static Modification: Static Modification to all occurrences of a named amino acid...
Definition: cv.hpp:5191
MS_PROTEINEER_LC
PROTEINEER-LC: Bruker PROTEINEER-LC software.
Definition: cv.hpp:2716
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_Before
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range Before: Precursor clipping range before...
Definition: cv.hpp:6532
MS_ProteomeDiscoverer_automatic_workload
ProteomeDiscoverer:automatic workload: Flag indicating automatic estimation of the workload level...
Definition: cv.hpp:7246
MS_4000_QTRAP
4000 QTRAP: Applied Biosystems/MDS SCIEX Q 4000 TRAP MS.
Definition: cv.hpp:625
MS_Exactive
Exactive: Thermo Scientific Exactive MS.
Definition: cv.hpp:2467
MS_protein_list_attribute
protein list attribute: Attribute describing a protein list.
Definition: cv.hpp:6631
MS_Mascot_ShowHomologousProteinsWithSubsetOfPeptides
Mascot:ShowHomologousProteinsWithSubsetOfPeptides: If true, show (sequence or spectrum) sub-set and s...
Definition: cv.hpp:4216
UO_candela
candela: A luminous intensity unit which equal to the luminous intensity, in a given direction...
Definition: cv.hpp:12538
MS_ProteomeDiscoverer_Strict_Score_Threshold
ProteomeDiscoverer:Strict Score Threshold: Specifies the threshold value for strict scoring...
Definition: cv.hpp:7426
MS_IRMPD
IRMPD (infrared multiphoton dissociation): Multiphoton ionization where the reactant ion dissociates ...
Definition: cv.hpp:1117
UNIMOD_Trp__Lys
Trp->Lys: Trp->Lys substitution.
Definition: cv.hpp:10999
MS_stainless_steel_plate
stainless steel plate: Stainless steel plate.
Definition: cv.hpp:6079
UNIMOD_Hex_1_HexNAc_1_
Hex(1)HexNAc(1): Hex1HexNAc1.
Definition: cv.hpp:10009
MS_tag_search
tag search: A sequence tag search.
Definition: cv.hpp:3553
MS_micrOTOF
micrOTOF: Bruker Daltonics&#39; micrOTOF: ESI TOF, APCI, APPI.
Definition: cv.hpp:2623
UO_molal
molal: A unit of concentration which expresses a concentration of a solution of 1 mole per kilogram o...
Definition: cv.hpp:12700
MS_ProteinScape_SearchResultId
ProteinScape:SearchResultId: The SearchResultId of this peptide as SearchResult in the ProteinScape d...
Definition: cv.hpp:4732
UNIMOD_Hex_1_NeuAc_1_
Hex(1)NeuAc(1): Hex NeuAc.
Definition: cv.hpp:11437
UNIMOD_ICDID
ICDID: Isotope-Coded Dimedone light form.
Definition: cv.hpp:10384
UNIMOD_Pentylamine
Pentylamine: Labeling transglutaminase substrate on glutamine side chain.
Definition: cv.hpp:10018
MS_spectrum_instrument_description_OBSOLETE
spectrum instrument description: Terms used to describe the spectrum.
Definition: cv.hpp:1819
MS_source_file
source file (raw data file): Describes the type of file and its content.
Definition: cv.hpp:2191
UNIMOD_dHex_1_Hex_1_
dHex(1)Hex(1): Hex1dHex1.
Definition: cv.hpp:11284
MS_monoisotopic_mass_OBSOLETE
monoisotopic mass: The mass of an ion or molecule calculated using the mass of the most abundant isot...
Definition: cv.hpp:916
UNIMOD_Nmethylmaleimide
Nmethylmaleimide: Nmethylmaleimide.
Definition: cv.hpp:8986
UNIMOD_CAMthiopropanoyl
CAMthiopropanoyl: 3-(carbamidomethylthio)propanoyl.
Definition: cv.hpp:8938
MS_LightSight_Software
LightSight Software: SCIEX or Applied Biosystems|MDS SCIEX software metabolite identification.
Definition: cv.hpp:2503
UO_cubic_meter
cubic meter: A volume unit which is equal to the volume of a cube with edges one meter in length...
Definition: cv.hpp:12784
UO_length_unit
length unit: A unit which is a standard measure of the distance between two points.
Definition: cv.hpp:12499
MS_Byonic__Peptide_AbsLogProb2D
Byonic: Peptide AbsLogProb2D: The absolute value of the log-base10 Byonic two-dimensional posterior e...
Definition: cv.hpp:7225
MS_Bruker_Daltonics_BioTOF_series
Bruker Daltonics BioTOF series: Bruker Daltonics&#39; BioTOF series.
Definition: cv.hpp:4852
MS_product_ion_m_z_delta
product ion m/z delta: The difference in m/z of the predicted m/z based on the assigned product ion m...
Definition: cv.hpp:3265
MS_Shimadzu_instrument_model
Shimadzu instrument model: Shimadzu corporation instrument model.
Definition: cv.hpp:550
MS_time_array
time array: A data array of relative time offset values from a reference time.
Definition: cv.hpp:2287
UNIMOD_SPITC
SPITC: 4-sulfophenyl isothiocyanate.
Definition: cv.hpp:8869
MS_TSQ_Quantum
TSQ Quantum: ThermoFinnigan TSQ Quantum MS.
Definition: cv.hpp:805
UNIMOD_Asn__Arg
Asn->Arg: Asn->Arg substitution.
Definition: cv.hpp:10801
UNIMOD_Triiodothyronine
Triiodothyronine: Triiodo.
Definition: cv.hpp:9166
MS_Paragon_input_parameter
Paragon input parameter: Search engine input parameters specific to Paragon.
Definition: cv.hpp:7555
MS_multidimensional_chromatography_modulation_description
multidimensional chromatography modulation description: Multidimensional chromatography modulation de...
Definition: cv.hpp:6544
UNIMOD_Delta_S__1_Se_1_
Delta:S(-1)Se(1): Selenium replaces sulfur.
Definition: cv.hpp:8761
MS_unimolecular_dissociation_OBSOLETE
unimolecular dissociation: Fragmentation reaction in which the molecularity is treated as one...
Definition: cv.hpp:1750
MS_Acquity_TQD
Acquity TQD: Waters quadrupole based Acquity TQD.
Definition: cv.hpp:5620
UNIMOD_Hex_3_HexNAc_3_
Hex(3)HexNAc(3): Hex(3) HexNAc(3).
Definition: cv.hpp:12397
MS_decoy_DB_from_UniProtKB_Swiss_Prot_OBSOLETE
decoy DB from UniProtKB/Swiss-Prot: Decoy database from a Swiss-Prot protein sequence database...
Definition: cv.hpp:4141
UO_density_unit
density unit: A unit which is a standard measure of the influence exerted by some mass...
Definition: cv.hpp:13036
MS_fed_supply_electrospray
fed supply electrospray: The sprayer is continuously fed with sample.
Definition: cv.hpp:6091
UNIMOD_dHex_1_Hex_4_
dHex(1)Hex(4): Hex4dHex1.
Definition: cv.hpp:11305
UNIMOD_Val__Glu
Val->Glu: Val->Glu substitution.
Definition: cv.hpp:9814
UNIMOD_TNBS
TNBS: Tri nitro benzene.
Definition: cv.hpp:9964
MS_double_focusing_mass_spectrometer_OBSOLETE
double-focusing mass spectrometer: A mass spectrometer that uses a magnetic sector for m/z focusing a...
Definition: cv.hpp:1276
UO_parts_per_notation_unit
parts per notation unit: A dimensionless concentration notation which describes the amount of one sub...
Definition: cv.hpp:12988
MS_SRM_spectrum
SRM spectrum: Spectrum obtained when data are acquired from specific product ions corresponding to m/...
Definition: cv.hpp:2239
MS_mzML_unique_identifier__combined_spectra
mzML unique identifier, combined spectra: Comma separated list of spectra that have been combined pri...
Definition: cv.hpp:8272
MS_data_stored_in_database
data stored in database: Source file for this mzIdentML was a data set in a database.
Definition: cv.hpp:3628
UO_attomole
attomole: A substance unit equal to 10^[-18] mol.
Definition: cv.hpp:12628
MS_multiphoton_dissociation
multiphoton dissociation (photodissociation): A process wherein the reactant ion is dissociated as a ...
Definition: cv.hpp:1732
UNIMOD_Gly__Ala
Gly->Ala: Gly->Ala substitution.
Definition: cv.hpp:9547
MS_frag__b_ion___H2O
frag: b ion - H2O: Fragmentation information, type of product: b ion without water.
Definition: cv.hpp:3940
UNIMOD_Cation_Mg_II_
Cation:Mg[II]: Replacement of 2 protons by magnesium.
Definition: cv.hpp:10261
UNIMOD_Ethyl_Deamidated
Ethyl+Deamidated: Deamidation followed by esterification with ethanol.
Definition: cv.hpp:10189
MS_researcher
researcher: Researcher role.
Definition: cv.hpp:4081
MS_SEQUEST_ViewCV
SEQUEST:ViewCV: SEQUEST View Input Parameters.
Definition: cv.hpp:3367
MS_ProteomeDiscoverer_Source_file_extension_OBSOLETE
ProteomeDiscoverer:Source file extension: File type (if not pepXML).
Definition: cv.hpp:5467
MS_m_z
m/z: Three-character symbol m/z is used to denote the quantity formed by dividing the mass of an ion ...
Definition: cv.hpp:223
MS_data_transformation
data transformation: Terms used to describe types of data processing.
Definition: cv.hpp:1792
MS_ProteomeDiscoverer_Static_Modification_for_X
ProteomeDiscoverer:Static Modification for X: Static Modification for X.
Definition: cv.hpp:5428
UNIMOD_Lipoyl
Lipoyl: Lipoyl.
Definition: cv.hpp:8518
MS_predicted_pI
predicted pI (predicted isoelectric point): The pH of a solution at which a charged molecule would no...
Definition: cv.hpp:3139
MS_MPD
MPD (photodissociation): A process wherein the reactant ion is dissociated as a result of absorption ...
Definition: cv.hpp:1735
MS_protein_level_global_FDR
protein-level global FDR: Estimation of the global false discovery rate of proteins.
Definition: cv.hpp:3919
MS_run_attribute
run attribute: Properties of the described run.
Definition: cv.hpp:3115
UNIMOD_3_phosphoglyceryl
3-phosphoglyceryl: 3-phosphoglyceryl.
Definition: cv.hpp:11332
UNIMOD_Hex_3_HexNAc_2_NeuAc_2_
Hex(3)HexNAc(2)NeuAc(2): Hex(3) HexNAc(2) NeuAc(2).
Definition: cv.hpp:12250
UNIMOD_Glu__Arg
Glu->Arg: Glu->Arg substitution.
Definition: cv.hpp:10570
MS_Xevo_G2_Tof
Xevo G2 Tof: Waters oa-ToF based Xevo G2 Tof.
Definition: cv.hpp:5608
UNIMOD_Phenylisocyanate_2H_5_
Phenylisocyanate:2H(5): D5-phenyl isocyanate.
Definition: cv.hpp:9202
UNIMOD_Lys
Lys: Addition of lysine due to transpeptidation.
Definition: cv.hpp:11176
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_NeuGc_1_
Hex(1)HexNAc(1)NeuAc(1)NeuGc(1): Hex HexNAc NeuAc NeuGc.
Definition: cv.hpp:11974
UNIMOD_Glu__Trp
Glu->Trp: Glu->Trp substitution.
Definition: cv.hpp:10579
UNIMOD_Amidine
Amidine: Amidination of lysines or N-terminal amines with methyl acetimidate.
Definition: cv.hpp:8698
MS_Bruker_Daltonics_flex_series
Bruker Daltonics flex series: Bruker Daltonics&#39; flex series.
Definition: cv.hpp:4849
MS_base_peak_m_z
base peak m/z: M/z value of the signal of highest intensity in the mass spectrum. ...
Definition: cv.hpp:1966
UNIMOD_Label_2H_4__GG
Label:2H(4)+GG: Ubiquitination 2H4 lysine.
Definition: cv.hpp:10066
MS_enhanced_multiply_charged_spectrum
enhanced multiply charged spectrum: MS1 spectrum that is enriched in multiply-charged ions compared t...
Definition: cv.hpp:2902
MS_ProteomeDiscoverer_Target_FDR_Relaxed
ProteomeDiscoverer:Target FDR Relaxed: Specifies the relaxed target false discovery rate (FDR...
Definition: cv.hpp:5245
UNIMOD_Arg2PG
Arg2PG: Adduct of phenylglyoxal with Arg.
Definition: cv.hpp:10057
UO_unit_per_volume_unit
unit per volume unit: A concentration unit which is a standard measure of the number of units...
Definition: cv.hpp:13021
MS_NoiseFilter_OBSOLETE
NoiseFilter: Removes noise from profile spectra by using different smoothing techniques.
Definition: cv.hpp:2803
UO_solid_angle_unit
solid angle unit: A unit which is a standard measure of the angle formed by three or more planes inte...
Definition: cv.hpp:12868
UNIMOD_Hex_2_HexA_1_HexNAc_1_Sulf_1_
Hex(2)HexA(1)HexNAc(1)Sulf(1): Hex(2) HexA HexNAc Sulf.
Definition: cv.hpp:11890
MS_Comet_deltacnstar
Comet:deltacnstar: The Comet result &#39;DeltaCnStar&#39;.
Definition: cv.hpp:7051
MS_SEQUEST_CleavesAt
SEQUEST:CleavesAt:
Definition: cv.hpp:3364
UNIMOD_Gly__Xle
Gly->Xle: Gly->Leu/Ile substitution.
Definition: cv.hpp:10630
MS_SpectrumMill_Discriminant_Score
SpectrumMill:Discriminant Score: Discriminant score from Agilent SpectrumMill software.
Definition: cv.hpp:4981
MS_ProteomeDiscoverer_min_peptide_length
ProteomeDiscoverer:min peptide length: Minimum peptide length.
Definition: cv.hpp:7258
MS_analysis_attribute
analysis attribute: Attribute of an item in the result of mass spectrometry proteomics data analysis...
Definition: cv.hpp:8362
MS_Synapt_G2_S_HDMS
Synapt G2-S HDMS: Waters oa-ToF based Synapt G2-S HDMS.
Definition: cv.hpp:5593
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Charge_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Charge Replacements: Specifies the charge state of ...
Definition: cv.hpp:5107
UNIMOD_OxLysBiotin
OxLysBiotin: Oxidized lysine biotinylated with biotin-LC-hydrazide.
Definition: cv.hpp:8629
MS_scan_number_only_nativeID_format__combined_spectra
scan number only nativeID format, combined spectra: Comma separated list of spectra that have been co...
Definition: cv.hpp:8266
MS_Conversion_to_mzData
Conversion to mzData: Conversion of a file format to Proteomics Standards Initiative mzData file form...
Definition: cv.hpp:2095
UNIMOD_bisANS_sulfonates
bisANS-sulfonates: BisANS with loss of both sulfonates.
Definition: cv.hpp:11236
UO_mass_unit
mass unit: A unit which is a standard measure of the amount of matter/energy of a physical object...
Definition: cv.hpp:12502
MS_MAT95XP
MAT95XP: ThermoFinnigan MAT95XP MS.
Definition: cv.hpp:733
MS_ProteomeDiscoverer_WinCyg_reference_database
ProteomeDiscoverer:WinCyg reference database: Windows full path for database.
Definition: cv.hpp:5476
UNIMOD_Delta_H_5_C_2_
Delta:H(5)C(2): Dimethylation of proline residue.
Definition: cv.hpp:9421
MS_X500R_QTOF
X500R QTOF: SCIEX X500R QTOF, a quadrupole - quadrupole - time-of-flight mass spectrometer.
Definition: cv.hpp:8323
MS_no_cleavage
no cleavage: No cleavage.
Definition: cv.hpp:6130
UNIMOD_Hex_4_HexNAc_4_Me_2_Pent_1_
Hex(4)HexNAc(4)Me(2)Pent(1): Hex(4) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:11617
MS_Synapt_G2_HDMS
Synapt G2 HDMS: Waters oa-ToF based Synapt G2 HDMS.
Definition: cv.hpp:5587
MS_ProteomeDiscoverer_Mascot_Peptide_CutOff_Score
ProteomeDiscoverer:Mascot:Peptide CutOff Score: Minimum score in the IonScore column that each peptid...
Definition: cv.hpp:5230
UNIMOD_ExacTagAmine
ExacTagAmine: ExacTag Amine label mass for 2-4-7-10 plex.
Definition: cv.hpp:9940
MS_ion_stability_type_OBSOLETE
ion stability type: Stability type of the ion.
Definition: cv.hpp:7321
UNIMOD_Tyr__Pro
Tyr->Pro: Tyr->Pro substitution.
Definition: cv.hpp:11038
UNIMOD_Fluorescein
Fluorescein: 5-Iodoacetamidofluorescein (Molecular Probe, Eugene, OR).
Definition: cv.hpp:8668
MS_AMS_OBSOLETE
AMS (accelerator mass spectrometry): A mass spectrometry technique in which atoms extracted from a sa...
Definition: cv.hpp:973
UO_week
week: A time unit which is equal to 7 days.
Definition: cv.hpp:12598
MS_mass_analyzer
mass analyzer: Terms used to describe the Analyzer.
Definition: cv.hpp:1786
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_1_
Hex(1)HexNAc(1)NeuAc(2)Ac(1): Ac Hex HexNAc NeuAc(2).
Definition: cv.hpp:11983
MS_Orbitrap_Fusion_ETD
Orbitrap Fusion ETD: Thermo Scientific Orbitrap Fusion with ETD.
Definition: cv.hpp:7543
MS_product_ion_OBSOLETE
product ion: An ion formed as the product of a reaction involving a particular precursor ion...
Definition: cv.hpp:1444
UNIMOD_HNE_Delta_H_2_O
HNE-Delta:H(2)O: Dehydrated 4-hydroxynonenal.
Definition: cv.hpp:9886
MS_non_leading_protein
non-leading protein: Zero to many proteins within each group should be annotated as non-leading to in...
Definition: cv.hpp:7498
UNIMOD_dHex_1_Hex_5_HexNAc_2_Pent_1_
dHex(1)Hex(5)HexNAc(2)Pent(1): DHex Hex(5) HexNAc(2) Pent.
Definition: cv.hpp:11560
MS_spectrum_representation
spectrum representation: Way in which the spectrum is represented, either with regularly spaced data ...
Definition: cv.hpp:2029
UNIMOD_dHex_1_Hex_1_HexNAc_4_
dHex(1)Hex(1)HexNAc(4): DHex Hex HexNAc(4).
Definition: cv.hpp:12058
MS_protXML_format
protXML format: Source file for this mzIdentML was in protXML file format.
Definition: cv.hpp:4507
MS_ionization_type
ionization type: The method by which gas phase ions are generated from the sample.
Definition: cv.hpp:124
MS_Phenyx_Trust_Parent_Charge
Phenyx:Trust Parent Charge: The parameter in Phenyx that specifies if the experimental charge state i...
Definition: cv.hpp:4384
UNIMOD_thioacylPA
thioacylPA: Membrane protein extraction.
Definition: cv.hpp:10279
MS_surface_assisted_laser_desorption_ionization
surface-assisted laser desorption ionization: The formation of gas-phase ions from molecules that are...
Definition: cv.hpp:1636
UNIMOD_Hex_5_HexNAc_2_Phos_1_
Hex(5)HexNAc(2)Phos(1): Hex(5) HexNAc(2) Phos.
Definition: cv.hpp:11518
UNIMOD_dHex_3_Hex_1_HexNAc_2_Kdn_1_
dHex(3)Hex(1)HexNAc(2)Kdn(1): DHex(3) Hex HexNAc(2) Kdn.
Definition: cv.hpp:12124
MS_first_column_elution_time
first column elution time: The time of elution from the first chromatographic column in the chromatog...
Definition: cv.hpp:6538
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_
Hex(1)HexNAc(1)NeuAc(1): Hex1HexNAc1NeuAc1.
Definition: cv.hpp:8722
MS_ProteinExtractor_Methodname
ProteinExtractor:Methodname: Name of the used method in the ProteinExtractor algorithm.
Definition: cv.hpp:4513
MS_spControl
spControl: Bruker software for data acquisition.
Definition: cv.hpp:2728
UO_volume_per_unit_volume
volume per unit volume: A dimensionless concentration unit which denotes the given volume of the solu...
Definition: cv.hpp:13105
MS_phosphoRS_site_probability
phosphoRS site probability: Estimate of the probability that the respective site is truly phosphoryla...
Definition: cv.hpp:6178
MS_normalized_collision_energy
normalized collision energy: Instrument setting, expressed in percent, for adjusting collisional ener...
Definition: cv.hpp:622
UO_ratio
ratio: A dimensionless unit which denotes an amount or magnitude of one quantity relative to another...
Definition: cv.hpp:13060
UNIMOD_Hex_4_HexNAc_3_Pent_1_
Hex(4)HexNAc(3)Pent(1): Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:11542
UNIMOD_Quinone
Quinone: Quinone.
Definition: cv.hpp:9151
UO_radiance_unit
radiance unit: A unit which is a standard measure of the power of electromagnetic radiation through s...
Definition: cv.hpp:12973
UNIMOD_Val__Ala
Val->Ala: Val->Ala substitution.
Definition: cv.hpp:9811
MS_Da_OBSOLETE
Da (dalton): A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:865
MS_photodiode_array_detector
photodiode array detector: An array detector used to record spectra in the ultraviolet and visible re...
Definition: cv.hpp:2374
MS_laser_attribute
laser attribute: Laser properties that are associated with a value.
Definition: cv.hpp:3067
MS_WIFF_nativeID_format__combined_spectra
WIFF nativeID format, combined spectra: WIFF comma separated list of spectra that have been combined ...
Definition: cv.hpp:8248
MS_spectrum_attribute
spectrum attribute: Spectrum properties that are associated with a value.
Definition: cv.hpp:1951
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_
Hex(4)HexNAc(4)NeuAc(1): Hex(4) HexNAc(4) NeuAc.
Definition: cv.hpp:12439
MS_ProteinLynx_Global_Server_mass_spectrum_XML_format
ProteinLynx Global Server mass spectrum XML format: Peak list file format used by ProteinLynx Global ...
Definition: cv.hpp:2350
MS_assay_attribute
assay attribute: Attribute describing an assay.
Definition: cv.hpp:6619
UNIMOD_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
Hex(1)HexNAc(2)NeuAc(1)Sulf(1): Hex HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:11959
UNIMOD_Phe__Gln
Phe->Gln: Phe->Gln substitution.
Definition: cv.hpp:10612
MS_Mascot_Integra
Mascot Integra: Mascot Integra.
Definition: cv.hpp:4714
MS_SEQUEST_sort_by_PreviousAminoAcid
SEQUEST:sort by PreviousAminoAcid: Sort order of SEQUEST search results given by the previous amino a...
Definition: cv.hpp:3490
MS_isolation_window_attribute
isolation window attribute: Isolation window parameter.
Definition: cv.hpp:2911
MS_cross_link_donor
cross-link donor: The Cross-linking donor, assigned according to the following rules: the export soft...
Definition: cv.hpp:7819
MS_peak
peak: A localized region of relatively large ion signal in a mass spectrum. Although peaks are often ...
Definition: cv.hpp:940
UNIMOD_LG_pyrrole
LG-pyrrole: Levuglandinyl-lysine pyrrole adduct.
Definition: cv.hpp:10234
UNIMOD_Crotonaldehyde
Crotonaldehyde: Crotonaldehyde.
Definition: cv.hpp:8848
MS_DB_MW_filter_maximum
DB MW filter maximum: Maximum value of molecular weight filter.
Definition: cv.hpp:3886
UNIMOD_ICPL_13C_6_
ICPL:13C(6): Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, heavy form.
Definition: cv.hpp:9085
MS_API_300
API 300: Applied Biosystems/MDS SCIEX API 300 MS.
Definition: cv.hpp:8059
MS_Paragon__search_effort
Paragon: search effort: The Paragon method setting that controls the two major modes of search effort...
Definition: cv.hpp:7567
UNIMOD_Xle__Gly
Xle->Gly: Leu/Ile->Gly substitution.
Definition: cv.hpp:10699
MS_error_on_peptide_area
error on peptide area: Error on peptide area.
Definition: cv.hpp:3700
MS_database_file_formats
database file formats: The children of this term define file formats of the sequence database used...
Definition: cv.hpp:4291
UNIMOD_Chlorpyrifos
Chlorpyrifos: O,O-diethyl o-3,5,6-trichloro-2-pyridyl phosphorothioate.
Definition: cv.hpp:10291
MS_MS_GF_
MS-GF+: MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6433
MS_search_result_details_OBSOLETE
search result details: OBSOLETE: Scores and global result characteristics.
Definition: cv.hpp:3916
MS_MS1_spectrum
MS1 spectrum: Mass spectrum created by a single-stage MS experiment or the first stage of a multi-sta...
Definition: cv.hpp:2197
MS_spectrum_quality_descriptions
spectrum quality descriptions: Description of the quality of the input spectrum.
Definition: cv.hpp:4321
UO_milligray
milligray: An absorbed dose unit which is equal to one thousandth of a gray or 10^[-3] Gy...
Definition: cv.hpp:12919
MS_frag__isobaric_label_ion
frag: isobaric label ion: Fragment ion corresponding to an isobaric label artifact.
Definition: cv.hpp:8386
UNIMOD_PyridoxalPhosphateH2
PyridoxalPhosphateH2: PLP bound to lysine reduced by sodium borohydride (NaBH4) to create amine linka...
Definition: cv.hpp:11323
MS_ProLuCID_deltacn
ProLuCID:deltacn: The ProLuCID result &#39;DeltaCn&#39;.
Definition: cv.hpp:7900
MS_TOPP_SpectraFilterScaler
TOPP SpectraFilterScaler: Applies a filter to peak spectra after intensity scaling according to rank...
Definition: cv.hpp:6718
UNIMOD_EGCG1
EGCG1: (-)-epigallocatechin-3-gallate.
Definition: cv.hpp:10345
MS_acquisition_parameter
acquisition parameter: Parameters used in the mass spectrometry acquisition.
Definition: cv.hpp:6127
MS_matrix_application_type
matrix application type: Describes the technique how the matrix is put on the sample target...
Definition: cv.hpp:3043
UNIMOD_ICDID_2H_6_
ICDID:2H(6): Isotope-Coded Dimedone heavy form.
Definition: cv.hpp:10387
MS_protein_group_level_combined_FDRScore
protein group-level combined FDRScore: mzidLibrary Combined FDRScore for proteins specifically obtain...
Definition: cv.hpp:7417
UNIMOD_Cys__Dha
Cys->Dha: Dehydroalanine (from Cysteine).
Definition: cv.hpp:9094
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuAc_1_
dHex(1)Hex(5)HexNAc(3)NeuAc(1): DHex Hex(5) HexNAc(3) NeuAc.
Definition: cv.hpp:11731
UNIMOD_Hex_5_HexNAc_5_
Hex(5)HexNAc(5): Hex(5) HexNAc(5).
Definition: cv.hpp:12448
MS_mzidLib_Thresholder
mzidLib:Thresholder: A routine for keeping only identifications passing a given threshold or setting ...
Definition: cv.hpp:7015
UNIMOD_Trp__Kynurenin
Trp->Kynurenin: Tryptophan oxidation to kynurenin.
Definition: cv.hpp:9055
UNIMOD_Crotonyl
Crotonyl: Crotonylation.
Definition: cv.hpp:11275
MS_TOPP_Decharger
TOPP Decharger: Decharges and merges different feature charge variants of the same chemical entity...
Definition: cv.hpp:6778
UNIMOD_LG_Hlactam_R
LG-Hlactam-R: Levuglandinyl - arginine hydroxylactam adduct.
Definition: cv.hpp:9379
MS_transmission
transmission: The ratio of the number of ions leaving a region of a mass spectrometer to the number e...
Definition: cv.hpp:961
UNIMOD_QTGG
QTGG: SUMOylation leaving GlnThrGlyGly.
Definition: cv.hpp:11158
UNIMOD_Hex_2_HexNAc_2_NeuAc_2_Sulf_1_
Hex(2)HexNAc(2)NeuAc(2)Sulf(1): Hex(2) HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:12202
MS_quantification_data_processing
quantification data processing: Terms used to describe types of quantification data processing...
Definition: cv.hpp:5839
MS_ACQUITY_UPLC_Systems_with_2D_Technology
ACQUITY UPLC Systems with 2D Technology: Waters LC-system ACQUITY UPLC Systems with 2D Technology...
Definition: cv.hpp:5551
MS_MzWiff
MzWiff: A software program for converting Applied Biosystems wiff file format to the mzXML or mzML fo...
Definition: cv.hpp:2272
UNIMOD_dHex_3_Hex_3_HexNAc_4_
dHex(3)Hex(3)HexNAc(4): DHex(3) Hex(3) HexNAc(4).
Definition: cv.hpp:11677
UNIMOD_Thr__Glu
Thr->Glu: Thr->Glu substitution.
Definition: cv.hpp:10927
UNIMOD_Lys__Xle
Lys->Xle: Lys->Leu/Ile substitution.
Definition: cv.hpp:9613
MS_MassHunter_Qualitative_Analysis
MassHunter Qualitative Analysis: Software for data analysis of data from 6000 series instruments...
Definition: cv.hpp:2557
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex Hex(4) HexA HexNAc(3) Sulf.
Definition: cv.hpp:12319
MS_64_bit_integer
64-bit integer: Signed 64-bit little-endian integer.
Definition: cv.hpp:2020
MS_selected_reaction_monitoring_spectrum
selected reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2248
MS_reservoir
reservoir: A sample inlet method involving a reservoir.
Definition: cv.hpp:319
MS_chromatography_separation
chromatography separation: A technique by which molecules are separated by chemical and physical prop...
Definition: cv.hpp:7099
UNIMOD_dHex_1_Hex_3_
dHex(1)Hex(3): Hex3dHex1.
Definition: cv.hpp:11302
MS_mass_difference
mass difference (delta M): The difference between a theoretically calculated molecular mass M and the...
Definition: cv.hpp:6199
UNIMOD_dHex_2_HexNAc_5_
dHex(2)HexNAc(5): DHex(2) HexNAc(5).
Definition: cv.hpp:12160
MS_sequential_m_z_separation_method_OBSOLETE
sequential m/z separation method: Sequential m/z separation method.
Definition: cv.hpp:1765
MS_SSMS_OBSOLETE
SSMS (Spark Source Mass Spectrometry): Mass spectrometry using spark ionization.
Definition: cv.hpp:1246
MS_unlabeled_peptide
unlabeled peptide: A peptide that has not been labelled with heavier-than-usual isotopes. This is often referred to as "light" to distinguish from "heavy".
Definition: cv.hpp:3226
MS_frag__d_ion
frag: d ion: Fragmentation information, type of product: d ion.
Definition: cv.hpp:3988
MS_isotope_dilution_mass_spectrometry_OBSOLETE
isotope dilution mass spectrometry: A quantitative mass spectrometry technique in which an isotopical...
Definition: cv.hpp:898
UNIMOD_Gln__Ser
Gln->Ser: Gln->Ser substitution.
Definition: cv.hpp:10864
UNIMOD_PS_Hapten
PS_Hapten: Reaction with phenyl salicylate (PS).
Definition: cv.hpp:11254
MS_combined_FDRScore_for_proteins
combined FDRScore for proteins: mzidLibrary Combined FDRScore for proteins.
Definition: cv.hpp:7390
MS_Auto_Spec_Ultima_NT
Auto Spec Ultima NT: Waters AutoSpec Ultima NT MS.
Definition: cv.hpp:658
MS_liquid_sample_state
liquid sample state: State if the sample is in liquid form.
Definition: cv.hpp:262
MS_mean_charge_array
mean charge array: Array of mean charge values where the mean charge is calculated as a weighted mean...
Definition: cv.hpp:7726
MS_delayed_extraction
delayed extraction: The application of the accelerating voltage pulse after a time delay in desorptio...
Definition: cv.hpp:1018
MS_cross_link_acceptor
cross-link acceptor: Cross-linking acceptor, assigned according to the following rules: the export so...
Definition: cv.hpp:7822
UO_gram_per_deciliter
gram per deciliter: A mass density unit which is equal to mass of an object in grams divided by the v...
Definition: cv.hpp:13114
MS_first_author
first author: The first of a set of authors associated with a publication or release. There may be more than one first author in cases where several authors share primary attribution.
Definition: cv.hpp:6388
UO_radiant_intensity_unit
radiant intensity unit: A unit which is a standard measure of the intensity of electromagnetic radiat...
Definition: cv.hpp:12967
MS_product_ion_scan_OBSOLETE
product ion scan: The specific scan function or process that records product ion spectrum.
Definition: cv.hpp:460
MS_TOPP_SpectraFilterWindowMower
TOPP SpectraFilterWindowMower: Applies a filter of the largest peaks in a sliding window over a peak ...
Definition: cv.hpp:6727
MS_Shimadzu_Corporation_software
Shimadzu Corporation software: Shimadzu Corporation software.
Definition: cv.hpp:4912
UO_electric_charge
electric charge: A unit which is a standard measure of the quantity of unbalanced electricity in a bo...
Definition: cv.hpp:13147
MS_measurement_method
measurement method: An attribute of resolution when recording the detector response in absence of the...
Definition: cv.hpp:2290
MS_electron_ionization
electron ionization: The ionization of an atom or molecule by electrons that are typically accelerate...
Definition: cv.hpp:1588
UNIMOD_NEIAA
NEIAA: N-ethyl iodoacetamide-d0.
Definition: cv.hpp:8833
MS_MALDI_Solutions_LC_MALDI
MALDI Solutions LC-MALDI: Software for automated LC-MALDI analysis and reporting. ...
Definition: cv.hpp:7435
MS_ASN_1
ASN.1: The sequence database was stored in the Abstract Syntax Notation 1 format. ...
Definition: cv.hpp:4297
MS_PSM_level_identification_statistic
PSM-level identification statistic: Identification confidence metric for a peptide spectrum match...
Definition: cv.hpp:7333
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Charge_Reduced_Precursor
ProteomeDiscoverer:Non-Fragment Filter:Remove Charge Reduced Precursor: Determines whether the charge...
Definition: cv.hpp:5128
MS_product_background
product background: The background area for the quantified transition.
Definition: cv.hpp:7531
UO_becquerel
becquerel: An activity (of a radionuclide) unit which is equal to the activity of a quantity of radio...
Definition: cv.hpp:12889
UNIMOD_Tyr__Arg
Tyr->Arg: Tyr->Arg substitution.
Definition: cv.hpp:11044
std::string URI
the URI for the resource.
Definition: cv.hpp:13359
UNIMOD_Phe__CamCys
Phe->CamCys: Phe->Cys substitution and carbamidomethylation.
Definition: cv.hpp:10150
UNIMOD_Saligenin
Saligenin: O-toluene.
Definition: cv.hpp:11074
UNIMOD_Phytochromobilin
Phytochromobilin: Phytochromobilin.
Definition: cv.hpp:9142
MS_source_interface_manufacturer
source interface manufacturer: The source interface manufacturer.
Definition: cv.hpp:6124
MS_time_of_flight
time-of-flight: Instrument that separates ions by m/z in a field-free region after acceleration to a ...
Definition: cv.hpp:400
MS_number_of_matched_peaks
number of matched peaks: The number of peaks that were matched as qualified by the ion series conside...
Definition: cv.hpp:3670
MS_ProteomeDiscoverer_Protein_Relevance_Threshold
ProteomeDiscoverer:Protein Relevance Threshold: Specifies a peptide threshold that determines whether...
Definition: cv.hpp:5299
MS_PeptideShaker_protein_group_score
PeptideShaker protein group score: The probability based PeptideShaker protein group score...
Definition: cv.hpp:7702
MS_merge_of_runs_of_1D_gel_bands
merge of runs of 1D gel bands: Attribute describing, how raw files build a raw file group...
Definition: cv.hpp:5728
UO_month
month: A time unit which is approximately equal to the length of time of one of cycle of the moon&#39;s p...
Definition: cv.hpp:12601
UNIMOD_HexNAc_1_NeuAc_1_
HexNAc(1)NeuAc(1): HexNAc NeuAc.
Definition: cv.hpp:11446
MS_LC_MS_label_free_quantitation_analysis
LC-MS label-free quantitation analysis: LC-MS label-free workflow (RT m/z map).
Definition: cv.hpp:5758
UNIMOD_Benzoyl
Benzoyl: Labeling reagent light form (N-term & K).
Definition: cv.hpp:8686
UO_lumen
lumen: A luminous flux unit which is equal to the luminous flux emitted into 1 steradian by a point s...
Definition: cv.hpp:12850
MS_chromosome_strand
chromosome strand: The strand (+ or -) to which the peptide has been mapped.
Definition: cv.hpp:8212
MS_PTM_localization_distinct_peptide_level_statistic
PTM localization distinct peptide-level statistic: Statistic to convey the confidence of the localiza...
Definition: cv.hpp:7942
MS_ProteinExtractor_PhenyxPeptideScoreThreshold
ProteinExtractor:PhenyxPeptideScoreThreshold: Only peptides with scores higher than that threshold ar...
Definition: cv.hpp:4573
MS_Phenyx_Score
Phenyx:Score: The protein score of a protein match in Phenyx.
Definition: cv.hpp:4420
UNIMOD_Glu__Val
Glu->Val: Glu->Val substitution.
Definition: cv.hpp:9529
MS_ProteinExtractor_SequestWeighting
ProteinExtractor:SequestWeighting: Influence of SEQUEST search engine in the process of merging the s...
Definition: cv.hpp:4555
UO_watt_per_steradian
watt per steradian: A radiant intensity unit which is equal to one kilogram meter squared per second ...
Definition: cv.hpp:12976
MS_sample_volume
sample volume: Total volume of solution used.
Definition: cv.hpp:115
UNIMOD_Hex_1_HexNAc_2_Pent_1_
Hex(1)HexNAc(2)Pent(1): Hex1HexNAc2Pent1.
Definition: cv.hpp:8728
UNIMOD_dHex_4_HexNAc_3_Kdn_1_
dHex(4)HexNAc(3)Kdn(1): DHex(4) HexNAc(3) Kdn.
Definition: cv.hpp:12229
UNIMOD_Thiophospho
Thiophospho: Thiophosphorylation.
Definition: cv.hpp:8866
UO_confluence_percentage
confluence percentage: A dimensionless percent unit which denotes the density of an attached or monol...
Definition: cv.hpp:13072
MS_modification_motif
modification motif: The regular expression describing the sequence motif for a modification.
Definition: cv.hpp:5881
MS_param__x_ion
param: x ion: Parameter information, type of product: x ion with charge on the C-terminal side...
Definition: cv.hpp:4057
MS_scan_window_lower_limit
scan window lower limit: The upper m/z bound of a mass spectrometer scan window.
Definition: cv.hpp:1957
UNIMOD_dHex_3_Hex_2_HexNAc_4_
dHex(3)Hex(2)HexNAc(4): DHex(3) Hex(2) HexNAc(4).
Definition: cv.hpp:12298
MS_peptide_attribute
peptide attribute: A nonphysical attribute that can be used to describe a peptide.
Definition: cv.hpp:3211
UO_half_life
half life: A time unit which represents the period over which the activity or concentration of a spec...
Definition: cv.hpp:12946
UNIMOD_Delta_H_4_C_6_
Delta:H(4)C(6): Acrolein addition +76.
Definition: cv.hpp:8827
MS_conversion_dynode_photomultiplier
conversion dynode photomultiplier: A detector in which ions strike a conversion dynode to produce ele...
Definition: cv.hpp:487
UNIMOD_Gln__Tyr
Gln->Tyr: Gln->Tyr substitution.
Definition: cv.hpp:10876
MS_amaZon_Speed_ETD
amaZon Speed ETD: Bruker Daltonics&#39; amaZon Speed ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR, GC-APCI, CaptiveSpray.
Definition: cv.hpp:7192
UNIMOD_Xle__Lys
Xle->Lys: Leu/Ile->Lys substitution.
Definition: cv.hpp:9592
MS_param__a_ion
param: a ion: Parameter information, type of product: a ion with charge on the N-terminal side...
Definition: cv.hpp:3631
UO_microampere
microampere: An electric current unit current which is equal to one millionth of an ampere or 10^[-6]...
Definition: cv.hpp:12610
UNIMOD_dHex_3_Hex_3_HexNAc_3_
dHex(3)Hex(3)HexNAc(3): DHex(3) Hex(3) HexNAc(3).
Definition: cv.hpp:12280
MS_peptide_sequence_level_e_value
peptide sequence-level e-value: Estimation of the e-value for distinct peptides once redundant identi...
Definition: cv.hpp:5872
UNIMOD_NeuAc
NeuAc: N-acetyl neuraminic acid.
Definition: cv.hpp:11182
UNIMOD_Tyr__Trp
Tyr->Trp: Tyr->Trp substitution.
Definition: cv.hpp:11053
MS_supplemental_collision_energy
supplemental collision energy: Energy for an ion experiencing supplemental collision with a stationar...
Definition: cv.hpp:8341
UNIMOD_Label_13C_6_15N_4__Methyl_2H_3_13C_1_
Label:13C(6)15N(4)+Methyl:2H(3)13C(1): 2H(3) 13C(1) monomethylated Arg13C(6) 15N(4).
Definition: cv.hpp:10357
UNIMOD_Xlink_SMCC
Xlink:SMCC: Monolink of sulfoSMCC/SMCC crosslinker to Cys.
Definition: cv.hpp:10402
MS_Phenyx_Instrument_Type
Phenyx:Instrument Type: The instrument type parameter value in Phenyx.
Definition: cv.hpp:4375
MS______BDEZ_____P_
(?<=[BDEZ])(?!P): Regular expression for V8-DE.
Definition: cv.hpp:4270
UNIMOD_dHex_1_Hex_4_HexNAc_1_Pent_1_
dHex(1)Hex(4)HexNAc(1)Pent(1): DHex Hex(4) HexNAc Pent.
Definition: cv.hpp:11503
MS_conversion_dynode_electron_multiplier
conversion dynode electron multiplier: A surface that is held at high potential so that ions striking...
Definition: cv.hpp:484
UNIMOD_Xle__Phe
Xle->Phe: Leu/Ile->Phe substitution.
Definition: cv.hpp:9619
MS_ProteomeDiscoverer_Absolute_XCorr_Threshold
ProteomeDiscoverer:Absolute XCorr Threshold: Minimum cross-correlation threshold that determines whet...
Definition: cv.hpp:5260
MS_UIMF_nativeID_format
UIMF nativeID format: Native format defined by frame=xsd:nonNegativeInteger scan=xsd:nonNegativeInteg...
Definition: cv.hpp:7891
MS_label_free_proteingroup_level_quantitation
label-free proteingroup level quantitation: Label-free proteingroup level quantitation.
Definition: cv.hpp:6352
MS_MaxQuant_PTM_Delta_Score_threshold
MaxQuant:PTM Delta Score threshold: Threshold for MaxQuant:PTM Delta Score.
Definition: cv.hpp:7990
MS_PROTEINEER
PROTEINEER: Bruker PROTEINEER software.
Definition: cv.hpp:2704
UNIMOD_dHex_2_Hex_3_HexNAc_1_Sulf_1_
dHex(2)Hex(3)HexNAc(1)Sulf(1): DHex(2) Hex(3) HexNAc Sulf.
Definition: cv.hpp:12028
UNIMOD_BITC
BITC: Benzyl isothiocyanate.
Definition: cv.hpp:10297
MS_Anubis
Anubis: Anubis software for selected reaction monitoring data.
Definition: cv.hpp:7522
MS_IMS_OBSOLETE
IMS (ion mobility spectrometry): The separation of ions according to their velocity through a buffer ...
Definition: cv.hpp:1111
MS_ETD
ETD (electron transfer dissociation): A process to fragment ions in a mass spectrometer by inducing f...
Definition: cv.hpp:2299
MS_ProteinExtractor_UsePhenyx
ProteinExtractor:UsePhenyx: Flag indicating to include Phenyx scoring for calculation of the ProteinE...
Definition: cv.hpp:4570
MS_SEQUEST_Uniq
SEQUEST:Uniq:
Definition: cv.hpp:3781
MS_Velos_Plus
Velos Plus: Thermo Scientific second generation Velos.
Definition: cv.hpp:5983
MS_thermal_ionization
thermal ionization: The ionization of a neutral species through contact with a high temperature surfa...
Definition: cv.hpp:1642
UNIMOD_DEDGFLYMVYASQETFG
DEDGFLYMVYASQETFG: Addition of DEDGFLYMVYASQETFG.
Definition: cv.hpp:10369
MS_ProteomeDiscoverer_SEQUEST_Low_resolution_spectra_contained
ProteomeDiscoverer:SEQUEST:Low resolution spectra contained: Flag indicating if low-resolution spectr...
Definition: cv.hpp:6988
MS_glow_discharge_ionization
glow discharge ionization: The formation of ions in the gas phase and from solid samples at the catho...
Definition: cv.hpp:1096
UNIMOD_Hex_3_Phos_1_
Hex(3)Phos(1): Hex(3) Phos.
Definition: cv.hpp:11467
UNIMOD_Pro__Arg
Pro->Arg: Pro->Arg substitution.
Definition: cv.hpp:9694
MS_confident_peptide_qualification
confident peptide qualification: The point of this entry is to define what is meant by confident for ...
Definition: cv.hpp:3604
UO_milligram
milligram: A mass unit which is equal to one thousandth of a gram or 10^[-3] g.
Definition: cv.hpp:12562
MS_ProteomeDiscoverer_Mascot_Significance_High
ProteomeDiscoverer:Mascot:Significance High: Calculated relaxed significance when performing a decoy ...
Definition: cv.hpp:6979
UNIMOD_Hex_1_HexNAc_2_dHex_1_Pent_1_
Hex(1)HexNAc(2)dHex(1)Pent(1): Hex1HexNAc2dHex1Pent1.
Definition: cv.hpp:8740
UO_picosecond
picosecond: A time unit which is equal to 10^[-12] s.
Definition: cv.hpp:12586
MS_small_molecule_modification_attribute
small molecule modification attribute: Attribute describing a small molecule modification.
Definition: cv.hpp:6646
UO_parts_per_thousand
parts per thousand: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:12994
MS_search_engine_specific_input_parameter
search engine specific input parameter: Search engine specific input parameters.
Definition: cv.hpp:4156
MS_polarity_OBSOLETE
polarity: Terms to describe the polarity setting of the instrument.
Definition: cv.hpp:214
UNIMOD_dHex_2_Hex_4_HexNAc_3_Pent_1_
dHex(2)Hex(4)HexNAc(3)Pent(1): DHex(2) Hex(4) HexNAc(3) Pent.
Definition: cv.hpp:11638
MS_search_engine_specific_input_metadata
search engine specific input metadata: Search engine specific metadata that are not user-controlled s...
Definition: cv.hpp:7588
UNIMOD_Hex_7_HexNAc_2_Phos_1_
Hex(7)HexNAc(2)Phos(1): Hex(7) HexNAc(2) Phos.
Definition: cv.hpp:11614
UNIMOD_Ethanolyl
Ethanolyl: Ethanolation.
Definition: cv.hpp:8905
UNIMOD_Pro__Tyr
Pro->Tyr: Pro->Tyr substitution.
Definition: cv.hpp:10840
MS_frag__precursor_ion___NH3
frag: precursor ion - NH3: Fragmentation information, type of product: precursor ion without ammonia...
Definition: cv.hpp:4813
MS_ProteomeDiscoverer_Organism_OBSOLETE
ProteomeDiscoverer:Organism: Sample organism (used for annotation purposes).
Definition: cv.hpp:5458
UO_degree_fahrenheit
degree fahrenheit: A temperature unit which is equal to 5/9ths of a kelvin. Negative 40 degrees Fahre...
Definition: cv.hpp:13075
UNIMOD_Ser__Asp
Ser->Asp: Ser->Asp substitution.
Definition: cv.hpp:10900
MS_reporter_ion_intensity
reporter ion intensity: Intensity of MS2 reporter ion (e.g. iTraq).
Definition: cv.hpp:5797
MS_PeptideShaker
PeptideShaker: PeptideShaker is a software for the interpretation of proteomics identification result...
Definition: cv.hpp:7666
UNIMOD_dHex_1_Hex_7_HexNAc_3_Sulf_1_
dHex(1)Hex(7)HexNAc(3)Sulf(1): DHex Hex(7) HexNAc(3) Sulf.
Definition: cv.hpp:11803
MS_Calculate_Probability_Scores
Calculate Probability Scores: Flag indicating that a probability score for the assessment that a repo...
Definition: cv.hpp:6562
MS_autoflex_III_smartbeam
autoflex III smartbeam: Bruker Daltonics&#39; autoflex III smartbeam: MALDI TOF.
Definition: cv.hpp:2605
MS_sequence_coverage
sequence coverage: The percent coverage for the protein based upon the matched peptide sequences (can...
Definition: cv.hpp:3586
UNIMOD_Asn__Val
Asn->Val: Asn->Val substitution.
Definition: cv.hpp:10804
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge2: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5395
UNIMOD_Hex_1_HexNAc_3_
Hex(1)HexNAc(3): Hex HexNAc(3).
Definition: cv.hpp:11881
MS_unmodified_peptide_sequence
unmodified peptide sequence: A sequence of letter symbols denoting the order of amino acids that comp...
Definition: cv.hpp:3214
UNIMOD_Cys__Asn
Cys->Asn: Cys->Asn substitution.
Definition: cv.hpp:10501
UNIMOD_Gly__Trp
Gly->Trp: Gly->Trp substitution.
Definition: cv.hpp:9553
MS_Shimadzu_Scientific_Instruments_instrument_model
Shimadzu Scientific Instruments instrument model: Shimadzu Scientific Instruments instrument model...
Definition: cv.hpp:2317
MS_IKES_OBSOLETE
IKES (ion kinetic energy spectrometry): A method of analysis in which a beam of ions is separated acc...
Definition: cv.hpp:1105
MS_SpectraST_discriminant_score_F
SpectraST:discriminant score F: SpectraST spectrum score.
Definition: cv.hpp:4498
UNIMOD_Hex_1_HexNAc_2_
Hex(1)HexNAc(2): Hex1HexNAc2.
Definition: cv.hpp:8719
MS_Andromeda_result_file
Andromeda result file: Andromeda result file output format.
Definition: cv.hpp:8023
MS_ProLuCID_xcorr
ProLuCID:xcorr: The ProLuCID result &#39;XCorr&#39;.
Definition: cv.hpp:7897
UNIMOD_ICPL
ICPL: Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form.
Definition: cv.hpp:9088
UO_femtogram
femtogram: A mass unit which is equal to 10^[-15] g.
Definition: cv.hpp:12574
UNIMOD_Thr__Ser
Thr->Ser: Thr->Ser substitution.
Definition: cv.hpp:9784
MS_TagRecon_MVH
TagRecon:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5017
UNIMOD_Tyr__Gly
Tyr->Gly: Tyr->Gly substitution.
Definition: cv.hpp:11029
UO_year
year: A time unit which is equal to 12 months which is science is taken to be equal to 365...
Definition: cv.hpp:12604
MS_emission_spectrum
emission spectrum: A plot of the relative intensity of electromagnetic radiation emitted by atoms or ...
Definition: cv.hpp:2959
MS_CRM_chromatogram_OBSOLETE
CRM chromatogram (consecutive reaction monitoring chromatogram): Chromatogram created by creating an ...
Definition: cv.hpp:4669
MS_TOPP_OpenSwathDecoyGenerator
TOPP OpenSwathDecoyGenerator: Generates decoys according to different models for a specific TraML...
Definition: cv.hpp:6889
MS_TMT_reagent_128
TMT reagent 128: The name of the sample labelled with the TMT reagent 128.
Definition: cv.hpp:8149
MS_source_potential
source potential: Potential difference at the MS source in volts.
Definition: cv.hpp:1906
UO_volume_unit
volume unit: A unit which is a standard measure of the amount of space occupied by any substance...
Definition: cv.hpp:12781
MS_convex_hull_baseline_reduction
convex hull baseline reduction: Constructs the baseline by fitting multiple parabolas to the spectrum...
Definition: cv.hpp:6256
MS_protein_group_passes_threshold
protein group passes threshold: A Boolean attribute to determine whether the protein group has passed...
Definition: cv.hpp:7537
MS_electron_affinity_OBSOLETE
electron affinity: The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:868
MS_database_UniProtKB
database UniProtKB: The name of the UniProtKB knowledgebase.
Definition: cv.hpp:6667
UNIMOD_Hex_1_HexNAc_1_dHex_1_
Hex(1)HexNAc(1)dHex(1): Hex1HexNAc1dHex1.
Definition: cv.hpp:8713
MS_SRM_quantitation_analysis
SRM quantitation analysis: Selected Reaction Monitoring workflow (XIC quantitation of precursor / fra...
Definition: cv.hpp:5770
MS_____K____P_
(?<=K)(?!P): Regular expression for Lys-C.
Definition: cv.hpp:4255
MS_ion_neutral_complex_OBSOLETE
ion/neutral complex: A particular type of transition state that lies between precursor and product io...
Definition: cv.hpp:1708
UO_millicurie
millicurie: An activity (of a radionuclide) unit which is equal to one thousandth of a curie or 10^[-...
Definition: cv.hpp:12928
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_
Hex(5)HexNAc(4)NeuAc(1): Hex(5) HexNAc(4) NeuAc.
Definition: cv.hpp:11389
MS_Andi_MS_format
Andi-MS format: AIA Analytical Data Interchange file format for mass spectrometry data...
Definition: cv.hpp:7615
MS_MS2_tag_based_proteingroup_level_quantitation
MS2 tag-based proteingroup level quantitation: MS2 tag-based proteingroup level quantitation.
Definition: cv.hpp:6367
UNIMOD_Biotin_Thermo_21360
Biotin:Thermo-21360: Was Biotin-PEO4-hydrazide.
Definition: cv.hpp:10021
UNIMOD_His__Cys
His->Cys: His->Cys substitution.
Definition: cv.hpp:10657
MS_TSQ_Endura
TSQ Endura: Thermo Scientific TSQ Endura MS.
Definition: cv.hpp:7549
UNIMOD_EEEDVIEVYQEQTGG
EEEDVIEVYQEQTGG: Sumoylation by SUMO-1 after Cyanogen bromide (CNBr) cleavage.
Definition: cv.hpp:11380
std::vector< std::string > exactSynonyms
Definition: cv.hpp:13393
MS_count_of_identified_proteins
count of identified proteins: The number of proteins that have been identified, which must match the ...
Definition: cv.hpp:7504
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_
Hex(3)HexNAc(3)NeuAc(1): Hex(3) HexNAc(3) NeuAc.
Definition: cv.hpp:12196
MS_SymBiot_XVI
SymBiot XVI: Applied Biosystems/MDS SCIEX SymBiot XVI MS.
Definition: cv.hpp:793
MS_Scaffold_input_parameter
Scaffold input parameter: Search engine input parameters specific to Scaffold.
Definition: cv.hpp:6607
MS_ProteomeDiscoverer_Activation_Type_OBSOLETE
ProteomeDiscoverer:Activation Type: Fragmentation method used (CID, MPD, ECD, PQD, ETD, HCD, Any).
Definition: cv.hpp:5068
MS_mass_table_source
mass table source: Children of this term specify the source of the mass table used.
Definition: cv.hpp:4285
MS_database_EST
database EST: Expressed sequence tag nucleotide sequence database.
Definition: cv.hpp:3841
MS_BioTOF_II
BioTOF II: Bruker Daltonics&#39; BioTOF II: ESI TOF.
Definition: cv.hpp:661
MS_energy_unit_OBSOLETE
energy unit: Energy units are represented in either eV or Joules.
Definition: cv.hpp:253
UNIMOD_Hex_2_HexNAc_2_
Hex(2)HexNAc(2): Hex2HexNAc2.
Definition: cv.hpp:8734
MS_MaRiMba_OBSOLETE
MaRiMba: Software used to predict transitions for selected reaction monitoring experiments based on o...
Definition: cv.hpp:3328
UNIMOD_Arg__His
Arg->His: Arg->His substitution.
Definition: cv.hpp:9733
MS_resonance_enhanced_multiphoton_ionization
resonance enhanced multiphoton ionization: Multiphoton ionization in which the ionization cross secti...
Definition: cv.hpp:1201
UNIMOD_dHex_1_Hex_4_HexNAc_5_Sulf_1_
dHex(1)Hex(4)HexNAc(5)Sulf(1): DHex Hex(4) HexNAc(5) Sulf.
Definition: cv.hpp:11752
MS_PAnalyzer_non_conclusive_protein
PAnalyzer:non-conclusive protein: A protein sharing all its matched peptides with either conclusive o...
Definition: cv.hpp:6934
MS_local_FLR_at_threshold
local FLR at threshold: Local false localization rate for the bottom item in list of localizations so...
Definition: cv.hpp:8377
MS_low_intensity_data_point_removal
low intensity data point removal: The removal of very low intensity data points that are likely to be...
Definition: cv.hpp:2281
MS_spectrum_same_set_protein
spectrum same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5041
MS_SpectraFilter_OBSOLETE
SpectraFilter: Applies a filter to peak spectra.
Definition: cv.hpp:2812
MS_TOPP_feature_linker
TOPP feature linker: Feature linker component of the TOPP software.
Definition: cv.hpp:6811
MS_ratio_calculation_method
ratio calculation method: Method used to calculate the ratio.
Definition: cv.hpp:6490
UNIMOD_Iodoacetanilide_13C_6_
Iodoacetanilide:13C(6): 13C labelled iodoacetanilide derivative.
Definition: cv.hpp:11365
MS_ASAPRatio
ASAPRatio: A program in the TPP that calculates PSM, peptide, and protein-level abundances based on 2...
Definition: cv.hpp:8017
MS_number_of_unmatched_peaks
number of unmatched peaks: The number of unmatched peaks.
Definition: cv.hpp:4336
UNIMOD_Microcin
Microcin: Microcin E492 siderophore ester from serine.
Definition: cv.hpp:9295
MS_Micromass_PKL_format
Micromass PKL format: Micromass PKL file format.
Definition: cv.hpp:2152
UNIMOD_dHex_1_Hex_4_HexNAc_3_
dHex(1)Hex(4)HexNAc(3): DHex Hex(4) HexNAc(3).
Definition: cv.hpp:11545
UNIMOD_Phosphoguanosine
Phosphoguanosine: Phospho-guanosine.
Definition: cv.hpp:9205
MS_search_input_details
search input details: Details describing the search input.
Definition: cv.hpp:4021
UNIMOD_Gln__Gly
Gln->Gly: Gln->Gly substitution.
Definition: cv.hpp:10855
MS______FL__
(?<=[FL]): Regular expression for PepsinA.
Definition: cv.hpp:4261
MS_gene_name
gene name: Name of the gene from which the protein is translated.
Definition: cv.hpp:3358
MS_sample_state
sample state: The chemical phase of a pure sample, or the state of a mixed sample.
Definition: cv.hpp:109
MS_inlet_temperature
inlet temperature: The temperature of the inlet of a mass spectrometer.
Definition: cv.hpp:6409
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_2_
dHex(2)Hex(2)HexNAc(2)Sulf(2): DHex(2) Hex(2) HexNAc(2) Sulf(2).
Definition: cv.hpp:12091
MS_ProteomeDiscoverer_SEQUEST_NTerminal_Modification
ProteomeDiscoverer:SEQUEST:NTerminal Modification: Dynamic N-terminal modification that is used durin...
Definition: cv.hpp:5287
MS_SEQUEST_sort_by_RSp
SEQUEST:sort by RSp: Sort order of SEQUEST search results given by the result &#39;Sp&#39; of &#39;Rank/Sp&#39; in th...
Definition: cv.hpp:3508
UNIMOD_Thr__Asn
Thr->Asn: Thr->Asn substitution.
Definition: cv.hpp:9790
MS_PepFinder
PepFinder: Thermo Scientific PepFinder BioPharma analysis software.
Definition: cv.hpp:7864
UNIMOD_Bodipy
Bodipy: Bodipy modifications onto cysteine.
Definition: cv.hpp:10093
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_2_
dHex(1)Hex(3)HexNAc(3)Pent(2): DHex Hex(3) HexNAc(3) Pent(2).
Definition: cv.hpp:11566
MS_quantile_normalization__proteins
quantile normalization, proteins: Normalization of protein values to approach the same distribution...
Definition: cv.hpp:5845
MS_peptide_phosphoRS_score
peptide:phosphoRS score: phosphoRS score for PTM site location at the peptide-level.
Definition: cv.hpp:7945
MS_eight_sample_run
eight sample run: The raw file contains the run of eight samples (e.g. 8-plex iTraq).
Definition: cv.hpp:5722
UO_millimetres_of_mercury
millimetres of mercury: A unit of pressure equal to the amount of fluid pressure one millimeter deep ...
Definition: cv.hpp:13306
MS_SEQUEST_TIC
SEQUEST:TIC: SEQUEST total ion current.
Definition: cv.hpp:4369
MS_EIEIO_OBSOLETE
EIEIO (electron-induced excitation in organics): The reaction of an ion with an electron in which the...
Definition: cv.hpp:1057
MS_Discoverer_MSF_format
Discoverer MSF format: Source file for this mzIdentML was in Thermo Scientific Discoverer MSF format...
Definition: cv.hpp:4933
MS_Comet_sprank
Comet:sprank: The Comet result &#39;SpRank&#39;.
Definition: cv.hpp:7057
UO_derived_unit_OBSOLETE
derived unit: A unit which is derived from base units.
Definition: cv.hpp:12634
MS_PSM_level_e_value
PSM-level e-value: Estimation of the e-value for peptide spectrum matches.
Definition: cv.hpp:7351
MS_DataAnalysis
DataAnalysis: Bruker software for data analysis.
Definition: cv.hpp:2674
MS_SEQUEST_PeptideNumber
SEQUEST:PeptideNumber: The SEQUEST result &#39;#&#39; in out file (peptide).
Definition: cv.hpp:3928
UNIMOD_DMPO
DMPO: DMPO spin-trap nitrone adduct.
Definition: cv.hpp:10381
MS_ICPL_reagent_10
ICPL reagent 10: The name of the sample labelled with the ICPL reagent 10.
Definition: cv.hpp:8125
UNIMOD_Hex_6_HexNAc_3_Phos_1_
Hex(6)HexNAc(3)Phos(1): Hex(6) HexNAc(3) Phos.
Definition: cv.hpp:11629
MS_esquire_4000
esquire 4000: Bruker Daltonics&#39; esquire 4000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:676
UNIMOD_Sulfo_NHS_LC_LC_Biotin
Sulfo-NHS-LC-LC-Biotin: Biot_LC_LC.
Definition: cv.hpp:9409
MS_FASTA_format
FASTA format: The sequence database was stored in the FASTA format.
Definition: cv.hpp:4294
MS_decoy_DB_from_nr_OBSOLETE
decoy DB from nr: Decoy database from a non-redundant GenBank sequence database.
Definition: cv.hpp:4123
UO_lux
lux: An illuminance unit which is equal to the illuminance produced by 1 lumen evenly spread over an ...
Definition: cv.hpp:12844
MS_isolation_window_target_m_z
isolation window target m/z: The primary or reference m/z about which the isolation window is defined...
Definition: cv.hpp:3028
UO_katal_per_cubic_meter
katal per cubic meter: A catalytic (activity) concentration unit which is equal to 1 katal activity o...
Definition: cv.hpp:13099
UNIMOD_Cation_Na
Cation:Na: Sodium adduct.
Definition: cv.hpp:8491
MS_LCQ_Advantage
LCQ Advantage: ThermoFinnigan LCQ Advantage MS.
Definition: cv.hpp:709
UNIMOD_Succinyl_13C_4_
Succinyl:13C(4): Succinic anhydride labeling reagent, heavy form (+4amu, 4C13), N-term & K...
Definition: cv.hpp:8587
MS_moving_belt
moving belt: Continuous moving surface in the form of a belt which passes through an ion source carry...
Definition: cv.hpp:307
UNIMOD_NEM_2H_5__H2O
NEM:2H(5)+H2O: D5 N-ethylmaleimide+water on cysteines.
Definition: cv.hpp:11272
MS_mzIdentML_format
mzIdentML format: The mzIdentML format for peptide and protein identification data from the PSI...
Definition: cv.hpp:6511
MS_label_free_peptide_level_quantitation
label-free peptide level quantitation: Label-free peptide level quantitation.
Definition: cv.hpp:6346
UNIMOD_BADGE
BADGE: Bisphenol A diglycidyl ether derivative.
Definition: cv.hpp:9349
UNIMOD_Hex_3_
Hex(3): Hex3.
Definition: cv.hpp:8707
MS_molecule
molecule: A molecules is a fundamental component of a chemical compound that is the smallest part of ...
Definition: cv.hpp:3121
UNIMOD_dHex_1_Hex_1_HexNAc_2_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1): DHex Hex HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12040
MS_common_search_engine_input_parameter
common search engine input parameter: Search engine input parameter that is shared by more than one s...
Definition: cv.hpp:6574
UNIMOD_Gly__Glu
Gly->Glu: Gly->Glu substitution.
Definition: cv.hpp:9556
UNIMOD_Thiadiazole
Thiadiazole: Thiadiazolydation of Cys.
Definition: cv.hpp:10423
MS_Progenesis_normalization
Progenesis normalization: Normalization as performed by Progenesis LC-MS.
Definition: cv.hpp:5857
UNIMOD_Hex_2_HexNAc_3_NeuGc_1_
Hex(2)HexNAc(3)NeuGc(1): Hex(2) HexNAc(3) NeuGc.
Definition: cv.hpp:12118
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
Hex(2)HexNAc(2)NeuAc(1)Sulf(1): Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12049
UNIMOD_Asn__Ser
Asn->Ser: Asn->Ser substitution.
Definition: cv.hpp:9658
MS_decoy_DB_from_UniProtKB_TrEMBL_OBSOLETE
decoy DB from UniProtKB/TrEMBL: Decoy database from a TrEMBL protein sequence database.
Definition: cv.hpp:6475
MS_BioTOF_III
BioTOF III: Bruker Daltonics&#39; BioTOF III: ESI TOF.
Definition: cv.hpp:4861
UNIMOD_Ala__Met
Ala->Met: Ala->Met substitution.
Definition: cv.hpp:10462
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Precursor_Overtones
ProteomeDiscoverer:Non-Fragment Filter:Remove Precursor Overtones: Determines whether precursor overt...
Definition: cv.hpp:5137
MS_paul_ion_trap_OBSOLETE
paul ion trap: A device that permits the trapping of ions by means of an alternating current voltage...
Definition: cv.hpp:1300
MS______FYWLKR_____P_
(?<=[FYWLKR])(?!P): Regular expression for TrypChymo.
Definition: cv.hpp:4264
MS_frag__x_ion
frag: x ion: Fragmentation information, type of product: x ion.
Definition: cv.hpp:3964
MS_suface_ionization_OBSOLETE
suface ionization: The ionization of a neutral species when it interacts with a solid surface with an...
Definition: cv.hpp:1225
MS_Laser_Ionization_MERGE_OBSOLETE
Laser Ionization MERGE (Laser Desorption): The formation of ions through the interaction of a laser w...
Definition: cv.hpp:1141
UO_electric_current_unit
electric current unit: A unit which is a standard measure of the flow of electric charge...
Definition: cv.hpp:12508
#define PWIZ_API_DECL
Definition: Export.hpp:32
UNIMOD_TAMRA_FP
TAMRA-FP: TAMRA fluorophosphonate modification of serine.
Definition: cv.hpp:10432
MS_ProteoAnnotator_non_canonical_gene_model_score
ProteoAnnotator:non-canonical gene model score: The sum of peptide-level scores for peptides mapped o...
Definition: cv.hpp:7714
MS_HCT
HCT: Bruker Daltonics&#39; HCT: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:688
MS_ProteomeDiscoverer_ion_settings
ProteomeDiscoverer:ion settings: Specifies the fragment ions and neutral losses that are calculated...
Definition: cv.hpp:7279
UNIMOD_Trp__Tyr
Trp->Tyr: Trp->Tyr substitution.
Definition: cv.hpp:11020
MS_SRM_proteingroup_level_quantitation
SRM proteingroup level quantitation: Selected Reaction Monitoring proteingroup level quantitation...
Definition: cv.hpp:7141
UNIMOD_Trp__Glu
Trp->Glu: Trp->Glu substitution.
Definition: cv.hpp:10990
MS_consecutive_reaction_monitoring_chromatogram_OBSOLETE
consecutive reaction monitoring chromatogram: Chromatogram created by creating an array of the measur...
Definition: cv.hpp:4666
MS_AutoSpec_Premier
AutoSpec Premier: Waters AutoSpec Premier.
Definition: cv.hpp:7120
MS_6320_Ion_Trap_LC_MS
6320 Ion Trap LC/MS: The 6320 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1867
UNIMOD_dHex_1_Hex_5_
dHex(1)Hex(5): Hex5dHex1.
Definition: cv.hpp:11308
UNIMOD_Asn__Tyr
Asn->Tyr: Asn->Tyr substitution.
Definition: cv.hpp:9667
MS_PubMed_identifier
PubMed identifier: A unique identifier for a publication in the PubMed database (MIR:00000015).
Definition: cv.hpp:3187
MS_n_terminal_flanking_residue
n-terminal flanking residue: The residue preceding the first amino acid in the peptide sequence as it...
Definition: cv.hpp:3643
UNIMOD_Label_2H_4_
Label:2H(4): 4,4,5,5-D4 Lysine.
Definition: cv.hpp:9340
UNIMOD_Thr__Gln
Thr->Gln: Thr->Gln substitution.
Definition: cv.hpp:10939
MS_regular_expression_for_interaction_scores_derived_from_cross_linking
))
Definition: cv.hpp:8296
MS_Voyager_Biospectrometry_Workstation_System
Voyager Biospectrometry Workstation System: Applied Biosystems MALDI-TOF data acquisition and analysi...
Definition: cv.hpp:2074
MS_TOPP_OpenSwathAnalyzer
TOPP OpenSwathAnalyzer: Picks peaks and finds features in an SRM experiment.
Definition: cv.hpp:6883
MS_PolarisQ
PolarisQ: ThermoFinnigan PolarisQ MS.
Definition: cv.hpp:763
MS_Trypsin_P
Trypsin/P: Cleavage agent Trypsin/P.
Definition: cv.hpp:4192
UNIMOD_Cys__ethylaminoAla
Cys->ethylaminoAla: Carbamidomethylated Cys that undergoes beta-elimination and Michael addition of e...
Definition: cv.hpp:10216
MS_file_format_conversion
file format conversion: Conversion of one file format to another.
Definition: cv.hpp:2044
MS_percent_of_base_peak_times_100
percent of base peak times 100: The magnitude of a peak expressed in terms of the percentage of the m...
Definition: cv.hpp:3268
UNIMOD_Xlink_DMP
Xlink:DMP: Both ends of crosslink attached to same peptide.
Definition: cv.hpp:9319
MS_MS_GF_QValue
MS-GF:QValue: MS-GF Q-value.
Definition: cv.hpp:6454
MS_TODOscoring_model_OBSOLETE
TODOscoring model: OBSOLETE: There is Phenyx:ScoringModel for Phenyx! Scoring model (more detailed gr...
Definition: cv.hpp:3520
MS_param__c_ion
param: c ion: Parameter information, type of product: c ion with charge on the N-terminal side...
Definition: cv.hpp:3664
MS_param__internal_ya_ion
param: internal ya ion: Parameter information, type of product: internal ya ion.
Definition: cv.hpp:4462
MS_chromatogram_title
chromatogram title: A free-form text title describing a chromatogram.
Definition: cv.hpp:2971
UO_nanogram
nanogram: A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g...
Definition: cv.hpp:12568
MS_Bruker_Daltonics_apex_series
Bruker Daltonics apex series: Bruker Daltonics&#39; apex series.
Definition: cv.hpp:4909
MS_FA
FA (flowing afterglow): An ion source immersed in a flow of helium or other inert buffer gas that car...
Definition: cv.hpp:1075
MS_selected_ion_monitoring_spectrum
selected ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2236
UNIMOD_Met__Lys
Met->Lys: Met->Lys substitution.
Definition: cv.hpp:9649
MS_ProteomeDiscoverer_Relaxed_Score_Threshold
ProteomeDiscoverer:Relaxed Score Threshold: Specifies the threshold value for relaxed scoring...
Definition: cv.hpp:7423
MS_preprocessing_software
preprocessing software: Preprocessing software.
Definition: cv.hpp:7450
UNIMOD_EGCG2
EGCG2: (-)-dehydroepigallocatechin.
Definition: cv.hpp:10348
MS_Phenyx_input_parameter
Phenyx input parameter: Search engine input parameters specific to Phenyx.
Definition: cv.hpp:6583
UNIMOD_Hex_2_HexNAc_3_NeuAc_1_Sulf_1_
Hex(2)HexNAc(3)NeuAc(1)Sulf(1): Hex(2) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12154
id_list parentsPartOf
Definition: cv.hpp:13391
UNIMOD_Met__His
Met->His: Met->His substitution.
Definition: cv.hpp:10756
MS_Paul_Ion_trap
Paul Ion trap (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three d...
Definition: cv.hpp:388
MS_ProteomeDiscoverer_Xtract_Lowest_Charge
ProteomeDiscoverer:Xtract:Lowest Charge: Lowest charge state that is allowed for the deconvolution of...
Definition: cv.hpp:5161
MS_ten_percent_valley
ten percent valley: An attribute of resolution when the ratio between adjacent signals is 10% of the ...
Definition: cv.hpp:415
UNIMOD_dHex_1_Hex_5_HexNAc_4_
dHex(1)Hex(5)HexNAc(4): Fucosylated biantennary.
Definition: cv.hpp:8968
UNIMOD_Phe__Ala
Phe->Ala: Phe->Ala substitution.
Definition: cv.hpp:10585
MS_Byonic_Score
Byonic:Score: The Byonic score is the primary indicator of PSM correctness. The Byonic score reflects...
Definition: cv.hpp:7075
UNIMOD_Menadione
Menadione: Menadione quinone derivative.
Definition: cv.hpp:8956
UNIMOD_Hex_2_HexNAc_3_NeuAc_3_
Hex(2)HexNAc(3)NeuAc(3): Hex(2) HexNAc(3) NeuAc(3).
Definition: cv.hpp:12355
MS_PSM_level_result_list_statistic
PSM-level result list statistic: Statistic pertaining to the full list of all PSMs.
Definition: cv.hpp:8401
UNIMOD_Met__Xle
Met->Xle: Met->Leu/Ile substitution.
Definition: cv.hpp:9652
MS_source_sprayer_manufacturer
source sprayer manufacturer: The source sprayer manufacturer.
Definition: cv.hpp:6067
UO_effective_dose_unit
effective dose unit: A unit which is a standard measure of the estimate of the stochastic effect that...
Definition: cv.hpp:13270
MS_Byonic_Best_Score
Byonic:Best Score: Best (largest) Byonic score of a PSM.
Definition: cv.hpp:7096
MS_sum_peak_picking
sum peak picking (area peak picking): Spectral peak processing conducted on the acquired data to conv...
Definition: cv.hpp:2941
MS_PASSEL_experiment_URI
PASSEL experiment URI: URI that allows access to a PASSEL experiment.
Definition: cv.hpp:7552
MS_SRM_software
SRM software: Software used to predict, select, or optimize transitions or analyze the results of sel...
Definition: cv.hpp:3163
MS_wavelet_transformation_smoothing
wavelet transformation smoothing: The random noise is removed by using the undecimated wavelet transf...
Definition: cv.hpp:6262
MS_S_lens_voltage
S-lens voltage: Potential difference setting of the Thermo Scientific S-lens stacked-ring ion guide i...
Definition: cv.hpp:5995
MS_param__w_ion
param: w ion: Parameter information, type of product: side chain loss w ion.
Definition: cv.hpp:4054
UNIMOD_dHex_2_Hex_2_HexNAc_3_NeuAc_1_
dHex(2)Hex(2)HexNAc(3)NeuAc(1): DHex(2) Hex(2) HexNAc(3) NeuAc.
Definition: cv.hpp:12268
MS_Ascore_software
Ascore software: Ascore software.
Definition: cv.hpp:6223
UNIMOD_Ser__Asn
Ser->Asn: Ser->Asn substitution.
Definition: cv.hpp:9763
UNIMOD_Hex_4_HexNAc_4_
Hex(4)HexNAc(4): Biantennary (-1 galactose).
Definition: cv.hpp:8974
MS_original_nucleic_acid_sequence
original nucleic acid sequence: Specification of the original nucleic acid sequence, prior to a modification. The value slot should hold the DNA or RNA sequence.
Definition: cv.hpp:6373
UNIMOD_Delta_Hg_1_
Delta:Hg(1): Mercury Mercaptan.
Definition: cv.hpp:8932
MS_SEQUEST_sort_by_Ions
SEQUEST:sort by Ions: Sort order of SEQUEST search results given by the ions.
Definition: cv.hpp:3478
MS_resolution_measurement_method
resolution measurement method: Which of the available standard measures is used to define whether two...
Definition: cv.hpp:136
UNIMOD_CyDye_Cy3
CyDye-Cy3: Cy3 CyDye DIGE Fluor saturation dye.
Definition: cv.hpp:9352
MS_MassHunter_Mass_Profiler
MassHunter Mass Profiler: Software for quantitation and statistical analysis of TOF and Q-TOF LC/MS d...
Definition: cv.hpp:2572
UNIMOD_Trp__Thr
Trp->Thr: Trp->Thr substitution.
Definition: cv.hpp:11014
MS_PTM_localization_single_result_statistic
PTM localization single result statistic: Statistic for a single item derived from a post-translation...
Definition: cv.hpp:8368
MS_BIRD
BIRD (blackbody infrared radiative dissociation): A special case of infrared multiphoton dissociation...
Definition: cv.hpp:997
UNIMOD_Arg__Thr
Arg->Thr: Arg->Thr substitution.
Definition: cv.hpp:9724
MS_precursor_neutral_loss
precursor neutral loss: This term can describe a neutral loss m/z value that is lost from an ion...
Definition: cv.hpp:4822
MS_single_reaction_monitoring_OBSOLETE
single reaction monitoring: This term is not recommended. See Selected Reaction Monitoring.
Definition: cv.hpp:466
MS_data_file_checksum_type
data file checksum type: Checksum is a form of redundancy check, a simple way to protect the integrit...
Definition: cv.hpp:2140
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_2_
Hex(1)HexNAc(1)dHex(1)Me(2): Hex HexNAc dHex Me(2).
Definition: cv.hpp:11455
MS_dye_laser
dye-laser: Dye lasers use an organic dye as the gain medium.
Definition: cv.hpp:3100
UNIMOD_dHex_2_Hex_4_HexNAc_4_
dHex(2)Hex(4)HexNAc(4): DHex(2) Hex(4) HexNAc(4).
Definition: cv.hpp:12442
UNIMOD_Hex_1_HexNAc_1_NeuAc_1_Sulf_1_
Hex(1)HexNAc(1)NeuAc(1)Sulf(1): Hex HexNAc NeuAc Sulf.
Definition: cv.hpp:11866
UNIMOD_EQIGG
EQIGG: Sumo mutant Smt3-WT tail following trypsin digestion.
Definition: cv.hpp:10054
MS_Progenesis_LC_MS
Progenesis LC-MS: Software from Nonlinear Dynamics for LC-MS label-free workflow. ...
Definition: cv.hpp:5746
MS_frag__z_ion___H2O
frag: z ion - H2O: Fragmentation information, type of product: z ion without water.
Definition: cv.hpp:4798
UNIMOD_dHex_2_Hex_4_HexNAc_4_Sulf_1_
dHex(2)Hex(4)HexNAc(4)Sulf(1): DHex(2) Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:11713
UO_concentration_unit
concentration unit: A unit which represents a standard measurement of how much of a given substance t...
Definition: cv.hpp:12649
std::string name
Definition: cv.hpp:13385
MS_amaZon_X
amaZon X: Bruker Daltonics&#39; amaZon X: ESI quadrupole ion trap, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4885
MS_1200_series_LC_MSD_SL
1200 series LC/MSD SL: The 1200 Series LC/MSD SL ion trap belongs to the Agilent LC/MSD ion trap fami...
Definition: cv.hpp:1846
MS_____R____P_
(?<=R)(?!P): Regular expression for Arg-C.
Definition: cv.hpp:4084
MS_LTQ_XL_ETD
LTQ XL ETD: Thermo Scientific LTQ XL MS with ETD.
Definition: cv.hpp:2434
UNIMOD_Lys__Phe
Lys->Phe: Lys->Phe substitution.
Definition: cv.hpp:10714
MS_anti_aromatic_ion_OBSOLETE
anti-aromatic ion: A planar cyclic ion with 4n ? electrons and is therefore not aromatic.
Definition: cv.hpp:1489
MS_proteogenomics_search
proteogenomics search: Proteogenomics search performed.
Definition: cv.hpp:8203
MS_jPOST_dataset_identifier
jPOST dataset identifier: Dataset identifier issued by the jPOST repository. A dataset can refer to e...
Definition: cv.hpp:8194
MS_Byonic__Peptide_AbsLogProb
Byonic: Peptide AbsLogProb: The absolute value of the log-base10 of the Byonic posterior error probab...
Definition: cv.hpp:7219
UNIMOD_Hex_8_HexNAc_2_
Hex(8)HexNAc(2): Hex(8) HexNAc(2).
Definition: cv.hpp:11656
MS_peptide_Ascore
peptide:Ascore: A-score for PTM site location at the peptide-level.
Definition: cv.hpp:7948
MS_kinetic_energy_release_distribution_OBSOLETE
kinetic energy release distribution: Distribution of values of translational kinetic energy release f...
Definition: cv.hpp:1132
UNIMOD_Dap_DSP
Dap-DSP: Diaminopimelic acid-DSP monolinked.
Definition: cv.hpp:11368
MS_maXis
maXis: Bruker Daltonics&#39; maXis: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4870
UO_watt_per_steradian_per_square_meter
watt per steradian per square meter: A radiance unit which is equal to one watt of radiant power inci...
Definition: cv.hpp:12964
MS_ProteinExtractor_Weighting
ProteinExtractor:Weighting: Weighting factor for protein list compilation by ProteinExtractor.
Definition: cv.hpp:6154
UNIMOD_dHex_1_Hex_6_HexNAc_2_
dHex(1)Hex(6)HexNAc(2): DHex Hex(6) HexNAc(2).
Definition: cv.hpp:11575
MS_Bruker_Container_format
Bruker Container format: Bruker Container raw file format.
Definition: cv.hpp:7198
UNIMOD_Hex_3_HexNAc_6_
Hex(3)HexNAc(6): Hex(3) HexNAc(6).
Definition: cv.hpp:12436
UNIMOD_DiLeu4plex118
DiLeu4plex118: Accurate mass for DiLeu 118 isobaric tag.
Definition: cv.hpp:11224
UNIMOD_Diacylglycerol
Diacylglycerol: Diacylglycerol.
Definition: cv.hpp:9115
MS_ProteoWizard_SeeMS
ProteoWizard SeeMS: An interactive GUI application to view and filter mass spectrometry data in a var...
Definition: cv.hpp:6916
MS_DTASelect_format
DTASelect format: DTASelect file format.
Definition: cv.hpp:4633
MS_MassIVE_dataset_URI
MassIVE dataset URI: URI that allows the access to one dataset in the MassIVE repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
Definition: cv.hpp:7756
MS_database_IPI_cow
database IPI_cow: International Protein Index database for Bos taurus sequences.
Definition: cv.hpp:4117
UNIMOD_Cys__Thr
Cys->Thr: Cys->Thr substitution.
Definition: cv.hpp:10510
MS_TOPP_OpenSwathChromatogramExtractor
TOPP OpenSwathChromatogramExtractor: Extract chromatograms (XIC) from a MS2 map file.
Definition: cv.hpp:6886
MS_intensity_unit
intensity unit: Intensity units are commonly arbitrary. Detected in counts per second (cps) when usin...
Definition: cv.hpp:244
MS_accelerator_mass_spectrometry_OBSOLETE
accelerator mass spectrometry: A mass spectrometry technique in which atoms extracted from a sample a...
Definition: cv.hpp:970
MS_ProteomeDiscoverer_Polarity_Mode_OBSOLETE
ProteomeDiscoverer:Polarity Mode: Polarity mode (positive or negative).
Definition: cv.hpp:5089
MS_prolate_traochoidal_mass_spectrometer_OBSOLETE
prolate traochoidal mass spectrometer: A mass spectrometer in which the ions of different m/z are sep...
Definition: cv.hpp:1303
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuAc_1_Sulf_1_
dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1): DHex Hex HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12142
UO_dalton
dalton: An independently to the base SI units defined mass unit which is equal to one twelfth of the ...
Definition: cv.hpp:13153
UNIMOD_Thr__Arg
Thr->Arg: Thr->Arg substitution.
Definition: cv.hpp:9805
UO_millisievert
millisievert: A dose equivalent unit which is equal to one thousandth of a sievert or 10^[-3] Sv...
Definition: cv.hpp:12907
UNIMOD_Hex_6_HexNAc_4_Me_3_
Hex(6)HexNAc(4)Me(3): Hex(6) HexNAc(4) Me(3).
Definition: cv.hpp:11710
UNIMOD_Val__His
Val->His: Val->His substitution.
Definition: cv.hpp:10954
UNIMOD_His__Gln
His->Gln: His->Gln substitution.
Definition: cv.hpp:9577
MS_ProteomeDiscoverer_SEQUEST_Peptide_Relevance_Factor
ProteomeDiscoverer:SEQUEST:Peptide Relevance Factor: Specifies a factor to apply to the protein score...
Definition: cv.hpp:5296
MS_Q_TRAP
Q TRAP: Applied Biosystems/MDS SCIEX Q TRAP MS.
Definition: cv.hpp:769
MS_LTQ_FT
LTQ FT: Finnigan LTQ FT MS.
Definition: cv.hpp:1777
UNIMOD_Label_13C_6_15N_2__Dimethyl
Label:13C(6)15N(2)+Dimethyl: Dimethyl 13C(6)15N(2) Silac label.
Definition: cv.hpp:10315
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Polarity_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Polarity Replacements: Specifies the polarity of th...
Definition: cv.hpp:5116
MS_SEQUEST_TopPercentMostIntense
SEQUEST:TopPercentMostIntense: Specify "percentage" as value of the CVParam.
Definition: cv.hpp:3595
UO_kilogram_per_mole
kilogram per mole: A molar mass unit which is equal to one kilogram of mass of one mole of chemical e...
Definition: cv.hpp:12757
UNIMOD_dHex_3_Hex_2_HexNAc_3_Kdn_1_
dHex(3)Hex(2)HexNAc(3)Kdn(1): DHex(3) Hex(2) HexNAc(3) Kdn.
Definition: cv.hpp:12310
UO_purity_percentage
purity percentage: A dimensionless percent unit which denotes the homogeneity of a biomaterial...
Definition: cv.hpp:13069
MS_MS_GF_PepQValue
MS-GF:PepQValue: MS-GF peptide-level Q-value.
Definition: cv.hpp:6457
MS_spectrum_generation_information
spectrum generation information: Vocabularies describing the spectrum generation information.
Definition: cv.hpp:4615
MS_average_product_ion_intensity
average product ion intensity: Average value of product ion intensity in a collection of identified s...
Definition: cv.hpp:6964
MS_normalized_spectral_abundance_factor
normalized spectral abundance factor: A normalized spectral abundance factor (NSAF).
Definition: cv.hpp:7936
MS_basepeak_chromatogram
basepeak chromatogram: Chromatogram created by creating an array of the most intense peaks at each ti...
Definition: cv.hpp:2404
MS_ProteomeXchange_project_tag
ProteomeXchange project tag: Tag that can be added to a ProteomeXchange dataset, to enable the groupi...
Definition: cv.hpp:7312
MS_TOPP_EICExtractor
TOPP EICExtractor: Quantifies signals at given positions in (raw or picked) LC/MS maps...
Definition: cv.hpp:6781
MS_mass_type_settings
mass type settings: The type of mass difference value to be considered by the search engine (monoisot...
Definition: cv.hpp:3907
MS_Bruker_Container_nativeID_format
Bruker Container nativeID format: Native identifier (UUID).
Definition: cv.hpp:7201
MS_peptide_level_score_OBSOLETE
peptide level score: Peptide level score.
Definition: cv.hpp:7789
MS_peptide_sharing_details
peptide sharing details: Accessions Containing Sequence - Accessions for each protein containing this...
Definition: cv.hpp:3688
UNIMOD_dHex_1_Hex_3_HexNAc_1_
dHex(1)Hex(3)HexNAc(1): DHex Hex(3) HexNAc.
Definition: cv.hpp:11923
UNIMOD_Cys__Gly
Cys->Gly: Cys->Gly substitution.
Definition: cv.hpp:9490
MS_nitrogen_rule_OBSOLETE
nitrogen rule: An organic molecule containing the elements C, H, O, S, P, or halogen has an odd nomin...
Definition: cv.hpp:931
MS_Lys_C
Lys-C: Endoproteinase Lys-C.
Definition: cv.hpp:4180
UNIMOD_Gly__Gln
Gly->Gln: Gly->Gln substitution.
Definition: cv.hpp:10645
UNIMOD_Hex_2_HexNAc_3_NeuAc_2_
Hex(2)HexNAc(3)NeuAc(2): Hex(2) HexNAc(3) NeuAc(2).
Definition: cv.hpp:12265
MS_secondary_isotope_peak
secondary isotope peak: Fragment ion is an isotopic peak other than that monoisotopic peak...
Definition: cv.hpp:8389
UNIMOD_Hex_2_HexNAc_2_NeuAc_1_
Hex(2)HexNAc(2)NeuAc(1): Hex(2) HexNAc(2) NeuAc.
Definition: cv.hpp:11494
MS_retention_time_window_lower_offset
retention time window lower offset: The extent of the retention time window in time units below the t...
Definition: cv.hpp:3304
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_
dHex(1)Hex(3)HexA(1)HexNAc(1): DHex Hex(3) HexA HexNAc.
Definition: cv.hpp:11998
MS_nth_generation_product_ion_spectrum
nth generation product ion spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments designe...
Definition: cv.hpp:2218
MS_1200_series_LC_MSD_VL
1200 series LC/MSD VL: The LC/MSD VL ion trap is part of the family of Agilent ion trap mass spectrom...
Definition: cv.hpp:1882
MS_TOPP_FeatureFinderCentroided
TOPP FeatureFinderCentroided: Detects two-dimensional features in centroided LC-MS data...
Definition: cv.hpp:6787
MS_microflex_LRF
microflex LRF: Bruker Daltonics&#39; microflex LRF: MALDI TOF.
Definition: cv.hpp:4876
MS_parameter_file
parameter file: Parameter file used to configure the acquisition of raw data on the instrument...
Definition: cv.hpp:2737
UO_percent
percent: A dimensionless ratio unit which denotes numbers as fractions of 100.
Definition: cv.hpp:13051
UNIMOD_Gln__Glu
Gln->Glu: Gln->Glu substitution.
Definition: cv.hpp:9706
UNIMOD_Hex_8_Phos_3_
Hex(8)Phos(3): Hex(8) Phos(3).
Definition: cv.hpp:12283
UNIMOD_Asp__Glu
Asp->Glu: Asp->Glu substitution.
Definition: cv.hpp:9508
UNIMOD_Dimethyl
Dimethyl: Di-Methylation.
Definition: cv.hpp:8503
MS_ion_role_OBSOLETE
ion role: Ion Role.
Definition: cv.hpp:1972
UNIMOD_mTRAQ
mTRAQ: MTRAQ light.
Definition: cv.hpp:10108
UO_disintegrations_per_minute
disintegrations per minute: An activity (of a radionuclide) unit which is equal to the activity of a ...
Definition: cv.hpp:12934
UNIMOD_HN2_mustard
HN2_mustard: Modification by hydroxylated mechloroethamine (HN-2).
Definition: cv.hpp:11335
UNIMOD_Hex_2_HexNAc_4_
Hex(2)HexNAc(4): Hex(2) HexNAc(4).
Definition: cv.hpp:12061
UNIMOD_dHex_2_Hex_4_
dHex(2)Hex(4): DHex(2) Hex(4).
Definition: cv.hpp:11962
MS_electron_multiplier_tube
electron multiplier tube: A device to amplify the current of a beam or packet of charged particles or...
Definition: cv.hpp:496
MS_overlayer_MALDI_sample_preparation
overlayer MALDI sample preparation: Overlayer method combining features of the crushed-crystal method...
Definition: cv.hpp:6241
MS_neutral_loss
neutral loss: The loss of an uncharged species during a rearrangement process. The value slot holds t...
Definition: cv.hpp:1426
MS_ProteomeDiscoverer_SEQUEST_Weight_of_x_Ions
ProteomeDiscoverer:SEQUEST:Weight of x Ions: Uses x ions for spectrum matching with this relative fac...
Definition: cv.hpp:5338
MS_Bruker_Daltonics_micrOTOF_series
Bruker Daltonics micrOTOF series: Bruker Daltonics&#39; micrOTOF series.
Definition: cv.hpp:4855
MS_translation_table
translation table: The translation table used to translate the nucleotides to amino acids...
Definition: cv.hpp:3421
MS_LTQ_Orbitrap_XL
LTQ Orbitrap XL: LTQ Orbitrap XL.
Definition: cv.hpp:2125
MS_spectrum_from_database_integer_nativeID_format
spectrum from database integer nativeID format: Native format defined by databasekey=xsd:long.
Definition: cv.hpp:4825
UNIMOD_Arg__Xle
Arg->Xle: Arg->Leu/Ile substitution.
Definition: cv.hpp:9745
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge1: Standard high confidence XCorr paramete...
Definition: cv.hpp:5368
MS_taxonomy__NCBI_TaxID
taxonomy: NCBI TaxID: This term is used if a NCBI TaxID is specified, e.g. 9606 for Homo sapiens...
Definition: cv.hpp:4639
UNIMOD_dHex_2_Hex_1_HexNAc_2_Kdn_1_
dHex(2)Hex(1)HexNAc(2)Kdn(1): DHex(2) Hex HexNAc(2) Kdn.
Definition: cv.hpp:12055
MS_ProteomeDiscoverer_Spectrum_Exporter_Export_Format_OBSOLETE
ProteomeDiscoverer:Spectrum Exporter:Export Format: Format of the exported spectra (dta...
Definition: cv.hpp:5359
MS_SRM_transition_attribute
SRM transition attribute: Attribute associated with a SRM transition.
Definition: cv.hpp:6955
UO_microgram_per_milliliter
microgram per milliliter: A mass unit density which is equal to mass of an object in micrograms divid...
Definition: cv.hpp:13312
UNIMOD_Cation_K
Cation:K: Replacement of proton by potassium.
Definition: cv.hpp:9424
MS_DeBunker_score_threshold
DeBunker:score threshold: Threshold for DeBunker PTM site location score.
Definition: cv.hpp:7975
MS_Synapt_G2_S_MS
Synapt G2-S MS: Waters oa-ToF based Synapt G2-S MS.
Definition: cv.hpp:5596
UNIMOD_Label_13C_9__Phospho
Label:13C(9)+Phospho: C13 label (Phosphotyrosine).
Definition: cv.hpp:8782
UNIMOD_ICAT_H_13C_6_
ICAT-H:13C(6): N-iodoacetyl, p-chlorobenzyl-13C6-glucamine.
Definition: cv.hpp:8659
MS_search_tolerance_plus_value
search tolerance plus value:
Definition: cv.hpp:4477
MS_ProteomeDiscoverer_Spectrum_Selector_Ionization_Source_OBSOLETE
ProteomeDiscoverer:Spectrum Selector:Ionization Source: Ionization source (electro-, nano-, thermospray, electron impact, APCI, MALDI, FAB etc).
Definition: cv.hpp:5065
UNIMOD_PyMIC
PyMIC: 3-methyl-2-pyridyl isocyanate.
Definition: cv.hpp:9367
MS_instrument_model
instrument model: Instrument model name not including the vendor&#39;s name.
Definition: cv.hpp:196
UNIMOD_Delta_H_4_C_3_
Delta:H(4)C(3): Propionaldehyde +40.
Definition: cv.hpp:8857
MS_resonance_ion_ejection_OBSOLETE
resonance ion ejection: A mode of ion ejection in a quadrupole ion trap that relies on a auxiliary ra...
Definition: cv.hpp:1363
MS_one_sample_run
one sample run: The raw file contains the run of one sample (e.g. spectral counting, LC-MS label-free).
Definition: cv.hpp:5710
MS_reflectron_on
reflectron on: Reflectron is on.
Definition: cv.hpp:475
UNIMOD_dHex_1_Hex_6_HexNAc_4_
dHex(1)Hex(6)HexNAc(4): DHex Hex(6) HexNAc(4).
Definition: cv.hpp:11785
UO_magnetic_flux_unit
magnetic flux unit: A unit which is a standard measure of quantity of magnetism, taking account of th...
Definition: cv.hpp:13165
MS_protein_rank
protein rank: The rank of the protein in a list sorted by the search engine.
Definition: cv.hpp:4153
MS_SID
SID (surface-induced dissociation): Fragmentation that results from the collision of an ion with a su...
Definition: cv.hpp:613
MS_6300_Series_Ion_Trap_Data_Analysis_Software
6300 Series Ion Trap Data Analysis Software: Software for data analysis of 6300 series ion trap mass ...
Definition: cv.hpp:2581
MS_instrument_configuration
instrument configuration (instrument): Description of the instrument or the mass spectrometer.
Definition: cv.hpp:1834
MS_positive_ion_mode_OBSOLETE
positive ion mode: OBSOLETE.
Definition: cv.hpp:367
UNIMOD_Pro__Thr
Pro->Thr: Pro->Thr substitution.
Definition: cv.hpp:9691
UO_unit
unit: A unit of measurement is a standardized quantity of a physical quality.
Definition: cv.hpp:12496
MS_H2O_neutral_loss_OBSOLETE
H2O neutral loss: Neutral loss of water.
Definition: cv.hpp:7657
UNIMOD_Biotin_Thermo_88310
Biotin:Thermo-88310: Desthiobiotin modification of lysine.
Definition: cv.hpp:10411
MS_alternating_OBSOLETE
alternating: Alternating.
Definition: cv.hpp:1843
UNIMOD_Atto495Maleimide
Atto495Maleimide: High molecular absorption maleimide label for proteins.
Definition: cv.hpp:10201
UNIMOD_PEITC
PEITC: Phenethyl isothiocyanate.
Definition: cv.hpp:10300
UNIMOD_Diisopropylphosphate
Diisopropylphosphate: O-Diisopropylphosphorylation.
Definition: cv.hpp:9079
MS_MS2_tag_based_protein_level_quantitation
MS2 tag-based protein level quantitation: MS2 tag-based protein level quantitation.
Definition: cv.hpp:6364
UNIMOD_Diiodo
Diiodo: Di-Iodination.
Definition: cv.hpp:8674
MS_modification_specificity_rule
modification specificity rule: The specificity rules for the modifications applied by the search engi...
Definition: cv.hpp:3499
UNIMOD_dHex_1_Hex_3_HexNAc_3_Pent_3_
dHex(1)Hex(3)HexNAc(3)Pent(3): DHex Hex(3) HexNAc(3) Pent(3).
Definition: cv.hpp:11620
UNIMOD_Asp__Pro
Asp->Pro: Asp->Pro substitution.
Definition: cv.hpp:10531
UNIMOD_Glu__Xle
Glu->Xle: Glu->Leu/Ile substitution.
Definition: cv.hpp:10558
MS_micrOTOF_Q
micrOTOF-Q: Bruker Daltonics&#39; micrOTOF-Q: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:2626
MS_peptide_consensus_RT
peptide consensus RT: Peptide consensus retention time.
Definition: cv.hpp:6484
MS_ProteomeDiscoverer_input_parameter
ProteomeDiscoverer input parameter: Search engine input parameters specific to ProteomeDiscoverer.
Definition: cv.hpp:6595
UNIMOD_dHex_1_Hex_4_HexNAc_4_Sulf_1_
dHex(1)Hex(4)HexNAc(4)Sulf(1): DHex Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:11641
UNIMOD_Delta_H_2_C_3_
Delta:H(2)C(3): Acrolein addition +38.
Definition: cv.hpp:8824
UNIMOD_Hex_3_HexNAc_6_Sulf_1_
Hex(3)HexNAc(6)Sulf(1): Hex(3) HexNAc(6) Sulf.
Definition: cv.hpp:11695
MS_offset_voltage
offset voltage: The potential difference between two adjacent interface voltages affecting in-source ...
Definition: cv.hpp:5893
MS_greylag
greylag: Greylag identification software.
Definition: cv.hpp:4624
UNIMOD_HexN
HexN: Hexosamine.
Definition: cv.hpp:9313
UNIMOD_ICAT_H
ICAT-H: N-iodoacetyl, p-chlorobenzyl-12C6-glucamine.
Definition: cv.hpp:8656
MS_quantification_information
quantification information: Quantification information.
Definition: cv.hpp:3694
MS_source_interface
source interface: The source interface.
Definition: cv.hpp:6055
MS_secondary_ionization
secondary ionization: The process in which ions are ejected from a sample surface as a result of bomb...
Definition: cv.hpp:1627
UNIMOD_Carboxymethyl
Carboxymethyl: Iodoacetic acid derivative.
Definition: cv.hpp:8437
MS_ProteomeDiscoverer_Spectrum_Score_Filter_Let_Pass_Above_Scores
ProteomeDiscoverer:Spectrum Score Filter:Let Pass Above Scores: Determines whether spectra with score...
Definition: cv.hpp:5185
UNIMOD_Hex_3_HexNAc_6_NeuAc_1_
Hex(3)HexNAc(6)NeuAc(1): Hex(3) HexNAc(6) NeuAc.
Definition: cv.hpp:11827
MS_Comet_spscore
Comet:spscore: The Comet result &#39;SpScore&#39;.
Definition: cv.hpp:7054
UO_kilobyte
kilobyte: An information unit which is equal to 1000 bytes.
Definition: cv.hpp:13192
MS_ICAT_heavy_reagent
ICAT heavy reagent: The name of the sample labelled with the heavy ICAT label.
Definition: cv.hpp:8107
MS_Mascot_query_number
Mascot query number: Native format defined by query=xsd:nonNegativeInteger.
Definition: cv.hpp:4831
MS_DB_filter_on_sequence_pattern
DB filter on sequence pattern: Filtering applied specifically by amino acid sequence pattern...
Definition: cv.hpp:3427
UO_femtomolar
femtomolar: A unit of molarity which is equal to 10^[-15] M.
Definition: cv.hpp:12715
MS_DTASelect
DTASelect: Analysis software designed to reassemble the SEQUEST peptide identifications and to highli...
Definition: cv.hpp:8089
MS_Bruker_Daltonics_amaZon_series
Bruker Daltonics amaZon series: Bruker Daltonics&#39; amaZon series.
Definition: cv.hpp:4882
UNIMOD_Pro__Cys
Pro->Cys: Pro->Cys substitution.
Definition: cv.hpp:10810
UO_cubic_centimeter_per_mole
cubic centimeter per mole: A molar volume unit which is equal to 1 cubic centimeter occupied by one m...
Definition: cv.hpp:12766
UNIMOD_Label_2H_4__Acetyl
Label:2H(4)+Acetyl: Acetyl 4,4,5,5-D4 Lysine.
Definition: cv.hpp:10042
UNIMOD_Gly__Phe
Gly->Phe: Gly->Phe substitution.
Definition: cv.hpp:10624
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Window_Tolerance
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Window Tolerance: Specifies the mass-to-charge...
Definition: cv.hpp:5353
MS_Phenyx_MinPepLength
Phenyx:MinPepLength: The minimal number of residues for a peptide to be considered for a valid identi...
Definition: cv.hpp:4399
MS_DTA_format
DTA format: SEQUEST DTA file format.
Definition: cv.hpp:2347
MS_TOPP_map_aligner
TOPP map aligner: Map aligner component of the TOPP software.
Definition: cv.hpp:6730
UNIMOD_RNPXL
RNPXL: Simulate peptide-RNA conjugates.
Definition: cv.hpp:12487
UNIMOD_dHex_1_Hex_3_HexNAc_6_
dHex(1)Hex(3)HexNAc(6): DHex Hex(3) HexNAc(6).
Definition: cv.hpp:12451
UNIMOD_Hex_3_HexNAc_3_Sulf_1_
Hex(3)HexNAc(3)Sulf(1): Hex(3) HexNAc(3) Sulf.
Definition: cv.hpp:12088
UNIMOD_dHex_1_Hex_4_HexNAc_4_
dHex(1)Hex(4)HexNAc(4): Fucosylated biantennary (-1 galactose).
Definition: cv.hpp:8965
MS_Scaffold_Protein_Probability
Scaffold:Protein Probability: Scaffold protein probability score.
Definition: cv.hpp:4978
UNIMOD_TMT2plex
TMT2plex: Duplex Tandem Mass Tag®.
Definition: cv.hpp:9931
MS_Bruker_Daltonics_HCT_Series
Bruker Daltonics HCT Series: Bruker Daltonics&#39; HCT Series.
Definition: cv.hpp:2608
MS_TOPP_SpectraFilterBernNorm
TOPP SpectraFilterBernNorm: Applies a Bern et al normalization to peak spectra.
Definition: cv.hpp:6703
UNIMOD_Myristoyl
Myristoyl: Myristoylation.
Definition: cv.hpp:8527
UNIMOD_Label_13C_4_15N_2__GG
Label:13C(4)15N(2)+GG: 13C(4) 15N(2) Lysine glygly.
Definition: cv.hpp:10180
MS_PeptideShaker_peptide_confidence
PeptideShaker peptide confidence: The probability based PeptideShaker peptide confidence.
Definition: cv.hpp:7699
MS_DB_filter_taxonomy
DB filter taxonomy: A taxonomy filter was to the database search.
Definition: cv.hpp:3406
UNIMOD_IED_Biotin
IED-Biotin: Biotinoyl-iodoacetyl-ethylenediamine.
Definition: cv.hpp:8941
MS_laser_type
laser type: Type of laser used for desorption purpose.
Definition: cv.hpp:3070
UNIMOD_Methyl_2H_3_13C_1_
Methyl:2H(3)13C(1): Monomethylation.
Definition: cv.hpp:9013
UNIMOD_dHex_1_Hex_5_HexNAc_2_
dHex(1)Hex(5)HexNAc(2): DHex Hex(5) HexNAc(2).
Definition: cv.hpp:11530
MS_regular_expression_for_a_digital_object_identifier__DOI_
(?:[.][0-9]+)*/(?:(?!["&\&#39;<>])[^ \r \v\f])+)
Definition: cv.hpp:7732
MS_Paragon__ID_focus
Paragon: ID focus: A Paragon method setting that allows the inclusion of large sets of features such ...
Definition: cv.hpp:7570
MS_ProteomeDiscoverer_Mascot_Number_of_attempts_to_submit_the_search
ProteomeDiscoverer:Mascot:Number of attempts to submit the search: Number of attempts to submit the M...
Definition: cv.hpp:5206
MS_H_Score_threshold
H-Score threshold: Threshold for H-score PTM site location score.
Definition: cv.hpp:7972
MS_sum_of_spectra
sum of spectra: Spectra Sum.
Definition: cv.hpp:2170
UNIMOD_Hex_3_HexNAc_3_NeuAc_1_Sulf_1_
Hex(3)HexNAc(3)NeuAc(1)Sulf(1): Hex(3) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:12247
UNIMOD_AccQTag
AccQTag: 6-aminoquinolyl-N-hydroxysuccinimidyl carbamate.
Definition: cv.hpp:8797
UNIMOD_Hex_6_Phos_1_
Hex(6)Phos(1): Hex(6) Phos.
Definition: cv.hpp:12022
UNIMOD_DiART6plex118
DiART6plex118: Accurate mass for DiART6plex 118.
Definition: cv.hpp:11359
MS_accelerating_voltage
accelerating voltage: The electrical potential used to impart kinetic energy to ions in a mass spectr...
Definition: cv.hpp:1321
MS_flowing_afterglow
flowing afterglow: An ion source immersed in a flow of helium or other inert buffer gas that carries ...
Definition: cv.hpp:1072
MS_DB_PI_filter_minimum
DB PI filter minimum: Minimum value of isoelectric point filter.
Definition: cv.hpp:3895
MS_channeltron
channeltron: A horn-shaped (or cone-shaped) continuous dynode particle multiplier. The ion strikes the inner surface of the device and induces the production of secondary electrons that in turn impinge on the inner surfaces to produce more secondary electrons. This avalanche effect produces an increase in signal in the final measured current pulse.
Definition: cv.hpp:478
UO_milliampere
milliampere: An electric current unit current which is equal to one thousandth of an ampere or 10^[-3...
Definition: cv.hpp:12607
UO_base_pair
base pair: A count unit which contains one nucleotide.
Definition: cv.hpp:13222
UNIMOD_Label_13C_6_15N_4__Dimethyl_2H_6_13C_2_
Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2): 2H(6) 13C(2) Dimethylated Arg13C(6) 15N(4).
Definition: cv.hpp:10360
MS_isolation_window_upper_limit_OBSOLETE
isolation window upper limit: The highest m/z being isolated in an isolation window.
Definition: cv.hpp:2914
UNIMOD_Ser__LacticAcid
Ser->LacticAcid: Lactic acid from N-term Ser.
Definition: cv.hpp:9181
MS_interchannel_delay
interchannel delay: The duration of intervals between scanning, during which the instrument configura...
Definition: cv.hpp:3190
UO_degree
degree: A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad...
Definition: cv.hpp:13045
MS_Mascot_homology_threshold
Mascot:homology threshold: The Mascot result &#39;homology threshold&#39;.
Definition: cv.hpp:4360
MS_FileFilter
FileFilter: Extracts or manipulates portions of data from peak, feature or consensus feature files...
Definition: cv.hpp:2788
UO_rate_unit
rate unit: A unit which represents a standard measurement occurrence of a process per unit time...
Definition: cv.hpp:13330
UNIMOD_dHex_1_Hex_5_HexA_1_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1): DHex Hex(5) HexA HexNAc(3) Sulf.
Definition: cv.hpp:11704
UNIMOD_Label_13C_3_
Label:13C(3): 13C3 label for SILAC.
Definition: cv.hpp:11161
MS_time_digital_converter
time-digital converter: A device for converting a signal of sporadic pluses into a digital representa...
Definition: cv.hpp:532
UNIMOD_Thr__Gly
Thr->Gly: Thr->Gly substitution.
Definition: cv.hpp:10933
UNIMOD_Hex_3_HexNAc_4_NeuAc_1_
Hex(3)HexNAc(4)NeuAc(1): Hex(3) HexNAc(4) NeuAc.
Definition: cv.hpp:11608
UNIMOD_Met__Aha
Met->Aha: Methionine replacement by azido homoalanine.
Definition: cv.hpp:10129
MS_experimental_condition__healthy_
experimental condition &#39;healthy&#39;: The experimental condition is &#39;healthy&#39; in contrast to &#39;disease&#39;...
Definition: cv.hpp:5695
MS_postacceleration_detector
postacceleration detector: A detector in which the charged particles are accelerated to a high veloci...
Definition: cv.hpp:1474
UNIMOD_Hex_5_HexNAc_2_
Hex(5)HexNAc(2): N-linked glycan core.
Definition: cv.hpp:8689
MS_TOPP_IDConflictResolver
TOPP IDConflictResolver: Resolves ambiguous annotations of features with peptide identifications.
Definition: cv.hpp:6856
UO_dose_equivalent_unit
dose equivalent unit: A unit which is a standard measure of the expression of dose in terms of its bi...
Definition: cv.hpp:12883
UNIMOD_Pro__Ala
Pro->Ala: Pro->Ala substitution.
Definition: cv.hpp:9682
UO_dyne_per_cm
dyne per cm: A surface tension unit which is equal to one dyne per centimeter.
Definition: cv.hpp:13255
UNIMOD_dHex_2_HexNAc_7_
dHex(2)HexNAc(7): DHex(2) HexNAc(7).
Definition: cv.hpp:12337
UNIMOD_NIC
NIC: Nicotinic Acid.
Definition: cv.hpp:9880
UNIMOD_biotinAcrolein298
biotinAcrolein298: Biotin hydrazide labeled acrolein addition +298.
Definition: cv.hpp:11203
UNIMOD_Cys__Met
Cys->Met: Cys->Met substitution.
Definition: cv.hpp:10498
MS_TripleTOF_5600_
TripleTOF 5600+: SCIEX TripleTOF 5600+ time-of-flight mass spectrometer.
Definition: cv.hpp:8047
MS_multiple_ion_monitoring_OBSOLETE
multiple ion monitoring: Data acquired when monitoring the ion current of a few specific m/z values...
Definition: cv.hpp:448
MS_ProteomeDiscoverer_Use_Average_Precursor_Mass_OBSOLETE
ProteomeDiscoverer:Use Average Precursor Mass: Use average mass for the precursor.
Definition: cv.hpp:5254
MS_CS
CS (charge stripping): The reaction of a positive ion with an atom or molecule that results in the re...
Definition: cv.hpp:1015
MS_explorer
explorer: IonSpec Explorer MS.
Definition: cv.hpp:682
MS_MaxQuant_Phospho__STY__Score_Diffs
MaxQuant:Phospho (STY) Score Diffs: The Phospho (STY) Score Diffs from MaxQuant software.
Definition: cv.hpp:6214
UNIMOD_Xle__Gln
Xle->Gln: Leu/Ile->Gln substitution.
Definition: cv.hpp:9634
MS_SEQUEST_xcorr
SEQUEST:xcorr: The SEQUEST result &#39;XCorr&#39;.
Definition: cv.hpp:3772
UNIMOD_Met__Hse
Met->Hse: Homoserine.
Definition: cv.hpp:8449
UNIMOD_Delta_H_2_C_3_O_1_
Delta:H(2)C(3)O(1): MDA adduct +54.
Definition: cv.hpp:8995
MS_Tranche_project_hash
Tranche project hash: Hash assigned by the Tranche resource to a whole project.
Definition: cv.hpp:6046
MS_sample_preparation
sample preparation: Properties of the preparation steps which took place before the measurement was p...
Definition: cv.hpp:3037
MS_associative_ionization
associative ionization: An ionization process in which two excited atoms or molecules react to form a...
Definition: cv.hpp:1564
MS_distributed_normalized_spectral_abundance_factor
distributed normalized spectral abundance factor: A distributed normalized spectral abundance factor ...
Definition: cv.hpp:7939
MS_TMT_reagent_126
TMT reagent 126: The name of the sample labelled with the TMT reagent 126.
Definition: cv.hpp:8143
MS_sample_number
sample number: A reference number relevant to the sample under study.
Definition: cv.hpp:103
UO_micromolar
micromolar: A unit of molarity which is equal to one millionth of a molar or 10^[-6] M...
Definition: cv.hpp:12688
UNIMOD_dHex_1_Hex_5_HexNAc_4_Pent_1_
dHex(1)Hex(5)HexNAc(4)Pent(1): DHex Hex(5) HexNAc(4) Pent.
Definition: cv.hpp:11758
MS_Applied_Biosystems_software
Applied Biosystems software: Applied Biosystems|MDS SCIEX software for data acquisition and analysis...
Definition: cv.hpp:2590
UO_plaque_forming_unit_per_volume
plaque forming unit per volume: A concentration unit which a measure of plague forming units in a giv...
Definition: cv.hpp:13132
MS_PTMProphet
PTMProphet: A program in the TPP that calculates PTM localization probabilities by re-analyzing the p...
Definition: cv.hpp:7168
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuGc_2_
dHex(1)Hex(2)HexNAc(2)NeuGc(2): DHex Hex(2) HexNAc(2) NeuGc(2).
Definition: cv.hpp:12256
MS_m_z_Separation_Method_OBSOLETE
m/z Separation Method: Mass/charge separation Method.
Definition: cv.hpp:1762
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_Mass_Analyzer_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized Mass Analyzer Replacements: Specifies the mass spec...
Definition: cv.hpp:5110
UO_parts_per_trillion
parts per trillion: A dimensionless concentration notation which denotes the amount of a given substa...
Definition: cv.hpp:13003
UNIMOD_Ser__His
Ser->His: Ser->His substitution.
Definition: cv.hpp:10906
MS_database_IPI_mouse
database IPI_mouse: International Protein Index database for Mus musculus sequences.
Definition: cv.hpp:4105
MS_EA_OBSOLETE
EA (electron affinity): The electron affinity of M is the minimum energy required for the process M- ...
Definition: cv.hpp:871
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge3: Standard medium confidence XCorr para...
Definition: cv.hpp:5386
MS_MassHunter_Easy_Access
MassHunter Easy Access: Software for open access data acquisition.
Definition: cv.hpp:2554
MS_EMT
EMT (electron multiplier tube): A device to amplify the current of a beam or packet of charged partic...
Definition: cv.hpp:499
UNIMOD_PhosphoHexNAc
PhosphoHexNAc: N-acetylglucosamine-1-phosphoryl.
Definition: cv.hpp:9244
MS_TOPP_MRMMapper
TOPP MRMMapper: MRMMapper maps measured chromatograms (mzML) and the transitions used (TraML)...
Definition: cv.hpp:6877
MS_16_bit_float_OBSOLETE
16-bit float: Signed 16-bit float.
Definition: cv.hpp:2014
UNIMOD_Lys__MetOx
Lys->MetOx: Lys->Met substitution and sulfoxidation.
Definition: cv.hpp:10156
UNIMOD_Xle__His
Xle->His: Leu/Ile->His substitution.
Definition: cv.hpp:9631
MS_Progenesis_confidence_score
Progenesis:confidence score: The data type confidence score produced by Progenesis LC-MS...
Definition: cv.hpp:5938
UNIMOD_Hex_1_HexNAc_1_NeuGc_2_
Hex(1)HexNAc(1)NeuGc(2): Hex HexNAc NeuGc(2).
Definition: cv.hpp:11980
UNIMOD_Gly_loss_Amide
Gly-loss+Amide: Enzymatic glycine removal leaving an amidated C-terminus.
Definition: cv.hpp:10027
MS_DB_composition_only_decoy
DB composition only decoy: Decoy database composition: database contains only decoy entries...
Definition: cv.hpp:4600
MS_text_format
text format: Simple text file format of "m/z [intensity]" values for a PMF (or single MS2) search...
Definition: cv.hpp:4357
MS_fast_ion_bombardment
fast ion bombardment: The ionization of any species by the interaction of a focused beam of ions havi...
Definition: cv.hpp:1768
UO_bit
bit: An information unit which refers to a digit in the binary numeral system, which consists of base...
Definition: cv.hpp:13186
MS_Trans_Proteomic_Pipeline
Trans-Proteomic Pipeline: A suite of open source tools for the processing of MS2 proteomics data deve...
Definition: cv.hpp:7144
MS_Electronic_Ionization_OBSOLETE
Electronic Ionization: The ionization of an atom or molecule by electrons that are typically accelera...
Definition: cv.hpp:340
MS_protein_level_result_list_attribute
protein-level result list attribute: Attribute of an entire protein list.
Definition: cv.hpp:8410
UNIMOD_Trp__Val
Trp->Val: Trp->Val substitution.
Definition: cv.hpp:11017
MS_TIQAM
TIQAM: Software used to predict, select, and optimize transitions for selected reaction monitoring ex...
Definition: cv.hpp:3325
UNIMOD_Phe__Cys
Phe->Cys: Phe->Cys substitution.
Definition: cv.hpp:9535
MS_single_protein_identification_statistic
single protein identification statistic: Results specific for one protein as part of a protein ambigu...
Definition: cv.hpp:3655
MS_frag__c_ion___H2O
frag: c ion - H2O: Fragmentation information, type of product: c ion without water.
Definition: cv.hpp:4792
MS_QTRAP_5500
QTRAP 5500: Applied Biosystems|MDS SCIEX QTRAP 5500.
Definition: cv.hpp:3349
UNIMOD_Label_13C_6_
Label:13C(6): 13C(6) Silac label.
Definition: cv.hpp:8791
MS_charge_array
charge array: A data array of charge values.
Definition: cv.hpp:2002
MS_decoy_SRM_transition
decoy SRM transition: A transition not expected to be present in the sample and used to calculate sta...
Definition: cv.hpp:6304
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1): DHex(2) Hex(2) HexNAc(2) NeuAc.
Definition: cv.hpp:12166
MS_TOF_MS_OBSOLETE
TOF-MS (time-of-flight mass spectrometer): An instrument that separates ions by m/z in a field-free r...
Definition: cv.hpp:1270
UO_nanogray
nanogray: An absorbed dose unit which is equal to one thousandth of a millionth of a gray or 10^[-9] ...
Definition: cv.hpp:12922
UNIMOD_dHex_1_Hex_3_HexNAc_5_
dHex(1)Hex(3)HexNAc(5): DHex Hex(3) HexNAc(5).
Definition: cv.hpp:12433
MS_peptide_sequence_level_local_FDR
peptide sequence-level local FDR: Estimation of the local false discovery rate for distinct peptides ...
Definition: cv.hpp:7369
MS_Q_Exactive_HF
Q Exactive HF: Thermo Scientific Q Exactive.
Definition: cv.hpp:7861
MS_data_processing_action
data processing action: Data processing attribute used to describe the type of data processing perfor...
Definition: cv.hpp:2086
MS_spectrum_type
spectrum type: Spectrum type.
Definition: cv.hpp:2134
MS_ANOVA_test
ANOVA-test: Perform an ANOVA-test (more than two groups). Specify in string value, which version is performed.
Definition: cv.hpp:6505
MS_median_baseline_reduction
median baseline reduction: The spectrum that will be baseline subtracted is divided into a number of ...
Definition: cv.hpp:6259
MS_preset_scan_configuration
preset scan configuration: A user-defined scan configuration that specifies the instrumental settings...
Definition: cv.hpp:2359
UO_enzyme_unit
enzyme unit: A catalytic unit activity which is equal to the amount of the enzyme that catalyzes the ...
Definition: cv.hpp:13033
UO_angstrom
angstrom: A length unit which is equal to 10 [-10] m.
Definition: cv.hpp:12553
UNIMOD_DimethylArsino
DimethylArsino: Reaction with dimethylarsinous (AsIII) acid.
Definition: cv.hpp:10144
MS_DB_source_EBI
DB source EBI: Database source EBI.
Definition: cv.hpp:4030
UNIMOD_dHex_1_Hex_5_HexNAc_3_NeuGc_1_Sulf_1_
dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1): DHex Hex(5) HexNAc(3) NeuGc Sulf.
Definition: cv.hpp:11794
MS_proline_endopeptidase
proline endopeptidase: Enzyme proline endopeptidase (EC 3.4.21.26).
Definition: cv.hpp:6004
MS_ultraflex_TOF_TOF
ultraflex TOF/TOF: Bruker Daltonics&#39; ultraflex TOF/TOF: MALDI TOF.
Definition: cv.hpp:814
UNIMOD_Hex_2_HexNAc_1_NeuGc_1_
Hex(2)HexNAc(1)NeuGc(1): Hex(2) HexNAc NeuGc.
Definition: cv.hpp:11920
MS_iTRAQ_reagent_121
iTRAQ reagent 121: The name of the sample labelled with the iTRAQ reagent 121.
Definition: cv.hpp:8185
MS_SILAC_heavy_reagent
SILAC heavy reagent: The name of the sample labelled with the heavy SILAC label.
Definition: cv.hpp:8131
MS_ProteomeDiscoverer_Xtract_Highest_MZ_OBSOLETE
ProteomeDiscoverer:Xtract:Highest MZ: Highest mass-to-charge (mz) value for spectral peaks in the mea...
Definition: cv.hpp:5158
MS_ProteomeDiscoverer_Max_Modifications_Per_Peptide
ProteomeDiscoverer:Max Modifications Per Peptide: Maximum number of different modifications that a pe...
Definition: cv.hpp:5275
MS_SCION_TQ
SCION TQ: Bruker Daltonics&#39; SCION TQ: GC-triple quadrupole.
Definition: cv.hpp:7180
MS_isotopic_pattern_area
isotopic pattern area: Area of all peaks belonging to the isotopic pattern of light or heavy peak (e...
Definition: cv.hpp:5794
UNIMOD_dHex_1_Hex_2_HexNAc_2_NeuAc_2_
dHex(1)Hex(2)HexNAc(2)NeuAc(2): DHex Hex(2) HexNAc(2) NeuAc(2).
Definition: cv.hpp:12241
MS_Discrete_Mass_Spectrum
Discrete Mass Spectrum (centroid spectrum): Processing of profile data to produce spectra that contai...
Definition: cv.hpp:562
MS_Savitzky_Golay_smoothing
Savitzky-Golay smoothing: Reduces intensity spikes by applying local polynomial regression (of degree...
Definition: cv.hpp:2866
MS_DFS
DFS: Thermo Scientific DFS HR GC-MS.
Definition: cv.hpp:2440
UNIMOD_ICAT_G_2H_8_
ICAT-G:2H(8): Gygi ICAT(TM) d8.
Definition: cv.hpp:8446
MS_PIA_XML_format
PIA XML format: A compilation of search engine results in the PIA XML format.
Definition: cv.hpp:7456
MS_final_PSM_list
final PSM list: A flag on a list of PSMs (SpectrumIdentificationList) to indicate that this is the fi...
Definition: cv.hpp:7609
UO_cubic_decimeter
cubic decimeter: A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3]...
Definition: cv.hpp:12796
MS_protein_level_identification_attribute
protein-level identification attribute: Protein level information.
Definition: cv.hpp:3562
UNIMOD_CoenzymeA
CoenzymeA: Cysteine modified Coenzyme A.
Definition: cv.hpp:8911
MS_ProteomeDiscoverer_Spectrum_Selector_Lower_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Lower RT Limit: Lower retention-time limit.
Definition: cv.hpp:5071
UNIMOD_CuSMo
CuSMo: Copper sulfido molybdopterin cytosine dinuncleotide.
Definition: cv.hpp:9286
UO_parts_per_billion
parts per billion: A dimensionless concentration notation which denotes the amount of a given substan...
Definition: cv.hpp:13000
UNIMOD_Hex_4_HexNAc_4_Pent_1_
Hex(4)HexNAc(4)Pent(1): Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:11611
UNIMOD_Cys__Ala
Cys->Ala: Cys->Ala substitution.
Definition: cv.hpp:10480
MS_search_engine_specific_score
search engine specific score: Search engine specific scores.
Definition: cv.hpp:3766
UO_minute
minute: A time unit which is equal to 60 seconds.
Definition: cv.hpp:12589
UNIMOD_Hex_4_HexNAc_4_NeuGc_1_Sulf_2_
Hex(4)HexNAc(4)NeuGc(1)Sulf(2): Hex(4) HexNAc(4) NeuGc Sulf(2).
Definition: cv.hpp:12379
UNIMOD_BisANS
BisANS: 4,4\&#39;-dianilino-1,1\&#39;-binaphthyl-5,5\&#39;-disulfonic acid.
Definition: cv.hpp:9400
UO_count_per_nanomolar
count per nanomolar: A rate unit which is equal to one over one nanomolar.
Definition: cv.hpp:13342
UNIMOD_Hypusine
Hypusine: Hypusine.
Definition: cv.hpp:9121
MS_daly_detector
daly detector: Detector consisting of a conversion dynode, scintillator and photomultiplier. The metal knob at high potential emits secondary electrons when ions impinge on the surface. The secondary electrons are accelerated onto the scintillator that produces light that is then detected by the photomultiplier detector.
Definition: cv.hpp:490
UNIMOD_Hex_9_Phos_3_
Hex(9)Phos(3): Hex(9) Phos(3).
Definition: cv.hpp:12334
MS_Data_Explorer
Data Explorer: Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2062
UNIMOD_Hex_5_HexNAc_4_NeuAc_2_
Hex(5)HexNAc(4)NeuAc(2): Hex(5) HexNAc(4) NeuAc(2).
Definition: cv.hpp:11386
MS_protein_attribute
protein attribute: An nonphysical attribute describing a specific protein.
Definition: cv.hpp:3202
UNIMOD_Hex_2_HexNAc_1_Sulf_1_
Hex(2)HexNAc(1)Sulf(1): Hex(2) HexNAc Sulf.
Definition: cv.hpp:11473
MS_atmospheric_pressure_chemical_ionization
atmospheric pressure chemical ionization: Chemical ionization that takes place at atmospheric pressur...
Definition: cv.hpp:328
UNIMOD_Hex_7_HexNAc_4_
Hex(7)HexNAc(4): Hex(7) HexNAc(4).
Definition: cv.hpp:11791
MS_data_file_content
data file content: Describes the data content on the file.
Definition: cv.hpp:2026
UNIMOD_iTRAQ4plex114
iTRAQ4plex114: Accurate mass for 114.
Definition: cv.hpp:9430
MS_PEAKS_Online
PEAKS Online: PEAKS Online software for high throughput data analysis.
Definition: cv.hpp:6106
MS_neptune
neptune: ThermoFinnigan NEPTUNE MS.
Definition: cv.hpp:745
MS_ProteomeDiscoverer_Xtract_Highest_Charge
ProteomeDiscoverer:Xtract:Highest Charge: Highest charge state that is allowed for the deconvolution ...
Definition: cv.hpp:5155
MS_6310_Ion_Trap_LC_MS
6310 Ion Trap LC/MS: The 6310 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1864
MS_error_on_absolute_quantity
error on absolute quantity: Error on absolute quantity.
Definition: cv.hpp:3721
MS_pI
pI (isoelectric point): The pH of a solution at which a charged molecule does not migrate in an elect...
Definition: cv.hpp:3133
MS_param__z_2_ion
param: z+2 ion: Parameter information, type of product: z+2 ion.
Definition: cv.hpp:4468
UNIMOD_Diethylphosphate
Diethylphosphate: O-Diethylphosphorylation.
Definition: cv.hpp:9898
MS_septum
septum: A disc composed of a flexible material that seals the entrance to the reservoir. Can also be entrance to the vacuum chamber.
Definition: cv.hpp:322
UNIMOD_Palmitoyl
Palmitoyl: Palmitoylation.
Definition: cv.hpp:8533
UO_kelvin
kelvin: A thermodynamic temperature unit which is equal to the fraction 1/273.16 of the thermodynamic...
Definition: cv.hpp:12532
UNIMOD_Val__Lys
Val->Lys: Val->Lys substitution.
Definition: cv.hpp:10957
MS_spectra_combination
spectra combination: Method used to combine the mass spectra.
Definition: cv.hpp:2167
UNIMOD_Arg__Trp
Arg->Trp: Arg->Trp substitution.
Definition: cv.hpp:9721
MS_Mascot_DAT_format
Mascot DAT format: Source file for this mzIdentML was in Mascot DAT file format.
Definition: cv.hpp:3880
UNIMOD_Hex_5_HexNAc_4_NeuGc_1_
Hex(5)HexNAc(4)NeuGc(1): Hex(5) HexNAc(4) NeuGc.
Definition: cv.hpp:11779
MS_distinct_peptide_level_FDRScore
distinct peptide-level FDRScore: mzidLibrary FDRScore for distinct peptides once redundant identifica...
Definition: cv.hpp:7372
MS_Xevo_TQ_S
Xevo TQ-S: Waters quadrupole based Xevo TQ-S.
Definition: cv.hpp:5632
MS_MassHunter_Metabolite_ID
MassHunter Metabolite ID: Software for identification of metabolites.
Definition: cv.hpp:2563
UNIMOD_phenylsulfonylethyl
phenylsulfonylethyl: Reaction with phenyl vinyl sulfone.
Definition: cv.hpp:11320
MS_selected_precursor_m_z
selected precursor m/z: Mass-to-charge ratio of a precursor ion selected for fragmentation.
Definition: cv.hpp:6991
MS_number_of_sequences_searched
number of sequences searched: The number of sequences (proteins / nucleotides) from the database sear...
Definition: cv.hpp:3433
MS_ProteomeDiscoverer_Peptide_Without_Protein_XCorr_Threshold
ProteomeDiscoverer:Peptide Without Protein XCorr Threshold: XCorr threshold for storing peptides that...
Definition: cv.hpp:6559
MS_ACQUITY_UPLC_H_Class_Bio
ACQUITY UPLC H-Class Bio: Waters LC-system ACQUITY UPLC H-Class Bio.
Definition: cv.hpp:5545
MS_neutral_loss_OBSOLETE
neutral loss: OBSOLETE: replaced by MS:1000336 (neutral loss): Leave this to PSI-MOD.
Definition: cv.hpp:3514
UNIMOD_Hex_1_HexNAc_1_NeuGc_4_
Hex(1)HexNAc(1)NeuGc(4): Hex HexNAc NeuGc(4).
Definition: cv.hpp:12301
UO_einstein_per_square_meter_per_second
einstein per square meter per second: An irradiance unit which is equal to one einstein per square me...
Definition: cv.hpp:12958
MS_iTRAQ_reagent_113
iTRAQ reagent 113: The name of the sample labelled with the iTRAQ reagent 113.
Definition: cv.hpp:8164
UNIMOD_Ub_amide
Ub-amide: Ub amide probe addition.
Definition: cv.hpp:11089
MS_ionization_energy_OBSOLETE
ionization energy: The minimum energy required to remove an electron from an atom or molecule to prod...
Definition: cv.hpp:892
UNIMOD_dHex_1_Hex_5_HexNAc_3_Sulf_1_
dHex(1)Hex(5)HexNAc(3)Sulf(1): DHex Hex(5) HexNAc(3) Sulf.
Definition: cv.hpp:11623
UNIMOD_Label_13C_6_15N_1_
Label:13C(6)15N(1): 13C(6) 15N(1) Silac label.
Definition: cv.hpp:9874
MS_peptide_consensus_list_attribute
peptide consensus list attribute: Attribute describing a peptide consensus list.
Definition: cv.hpp:6634
UO_millimole
millimole: A substance unit equal to a thousandth of a mol or 10^[-3] mol.
Definition: cv.hpp:12616
MS_MAT95XP_Trap
MAT95XP Trap: ThermoFinnigan MAT95XP Trap MS.
Definition: cv.hpp:736
MS_Progenesis_manual_alignment
Progenesis manual alignment: RT alignment of Progenesis software using automatic and manual vectors...
Definition: cv.hpp:5854
MS_pymzML
pymzML: Python module to interface mzML Data.
Definition: cv.hpp:5998
UNIMOD_Met__Ser
Met->Ser: Met->Ser substitution.
Definition: cv.hpp:10768
MS_submitter_keyword
submitter keyword: Keyword assigned by the data submitter.
Definition: cv.hpp:6037
MS_ProteomeDiscoverer_Maximum_Delta_Cn
ProteomeDiscoverer:Maximum Delta Cn: Delta Cn threshold for filtering out PSM&#39;s.
Definition: cv.hpp:6565
MS_boxcar_smoothing
boxcar smoothing (moving average smoothing): Reduces intensity spikes by averaging each point with tw...
Definition: cv.hpp:2887
UNIMOD_HexNAc_5_
HexNAc(5): HexNAc(5).
Definition: cv.hpp:12007
UNIMOD_2_nitrobenzyl
2-nitrobenzyl: Tyrosine caged with 2-nitrobenzyl (ONB).
Definition: cv.hpp:10414
MS_TSQ
TSQ: ThermoFinnigan TSQ MS.
Definition: cv.hpp:2767
MS_molecule_taxonomy
molecule taxonomy: The taxonomy of the resultant molecule from the search.
Definition: cv.hpp:3574
MS_precursor_recalculation
precursor recalculation: A process that recalculates existing precursor selected ions with one or mor...
Definition: cv.hpp:2860
MS_EE_OBSOLETE
EE (even-electron ion): An ion containing no unpaired electrons in its ground electronic state...
Definition: cv.hpp:1051
MS_Linked_Scan_at_Constant_B2_E_OBSOLETE
Linked Scan at Constant B2/E: A linked scan performed on a sector mass spectrometer that incorporates...
Definition: cv.hpp:1414
MS_Th_s
Th/s: Unit describing the scan rate of a spectrum in Thomson per second.
Definition: cv.hpp:2965
UNIMOD_Asn__Asp
Asn->Asp: Asn->Asp substitution.
Definition: cv.hpp:9673
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuGc_1_
dHex(2)Hex(2)HexNAc(2)NeuGc(1): DHex(2) Hex(2) HexNAc(2) NeuGc.
Definition: cv.hpp:12172
MS_QSTAR_Elite
QSTAR Elite: SCIEX or Applied Biosystems|MDS SCIEX QSTAR Elite.
Definition: cv.hpp:2485
UO_linear_density_unit
linear density unit: A density unit which is a standard measure of the mass exerting an influence on ...
Definition: cv.hpp:13039
UNIMOD_DTT_ST
DTT_ST: Dithiothreitol (DTT).
Definition: cv.hpp:9922
MS_MaxQuant_P_site_localization_probability_threshold
MaxQuant:P-site localization probability threshold: Threshold for MaxQuant:P-site localization probab...
Definition: cv.hpp:7987
MS_secondary_electron_OBSOLETE
secondary electron: Electrons that are ejected from a sample surface as a result of bombardment by a ...
Definition: cv.hpp:1477
MS_custom_unreleased_software_tool
custom unreleased software tool: A software tool that has not yet been released. The value should des...
Definition: cv.hpp:2932
MS_ProteomeDiscoverer_SEQUEST_FT_High_Confidence_XCorr_Charge3
ProteomeDiscoverer:SEQUEST:FT High Confidence XCorr Charge3: FT high confidence XCorr parameter for c...
Definition: cv.hpp:5398
MS_ProteomeDiscoverer_Non_Fragment_Filter_Maximum_Neutral_Loss_Mass
ProteomeDiscoverer:Non-Fragment Filter:Maximum Neutral Loss Mass: Maximum allowed mass of a neutral l...
Definition: cv.hpp:5125
UNIMOD_Thr__Phe
Thr->Phe: Thr->Phe substitution.
Definition: cv.hpp:10930
UNIMOD_SUMO3549
SUMO3549: SUMOylation by SUMO-2/3 after tryptic cleavage.
Definition: cv.hpp:10276
UNIMOD_dHex_2_Hex_2_HexNAc_5_
dHex(2)Hex(2)HexNAc(5): DHex(2) Hex(2) HexNAc(5).
Definition: cv.hpp:12313
MS_Pro_ICAT
Pro ICAT: Applied Biosystems|MDS SCIEX software for protein ID and quant by ICAT. ...
Definition: cv.hpp:2524
UNIMOD_Phe__Pro
Phe->Pro: Phe->Pro substitution.
Definition: cv.hpp:10609
MS_ProteomeDiscoverer_Mascot_Time_interval_between_attempts_to_submit_a_search
ProteomeDiscoverer:Mascot:Time interval between attempts to submit a search: Time interval between at...
Definition: cv.hpp:5215
MS_spectrum_interpretation
spectrum interpretation: Collection of terms from the PSI Proteome Informatics standards describing t...
Definition: cv.hpp:3361
MS_ion_mobility_spectrometry_OBSOLETE
ion mobility spectrometry: The separation of ions according to their velocity through a buffer gas un...
Definition: cv.hpp:1108
MS_possible_charge_state
possible charge state: A possible charge state of the ion in a situation where the charge of an ion i...
Definition: cv.hpp:2419
MS_TMT_reagent_129
TMT reagent 129: The name of the sample labelled with the TMT reagent 129.
Definition: cv.hpp:8152
UNIMOD_Met__Cys
Met->Cys: Met->Cys substitution.
Definition: cv.hpp:10741
UNIMOD_Thr__Asp
Thr->Asp: Thr->Asp substitution.
Definition: cv.hpp:10924
UNIMOD_Xle__Glu
Xle->Glu: Leu/Ile->Glu substitution.
Definition: cv.hpp:10696
MS_family_member_protein
family member protein: A protein with significant homology to another protein, but some distinguishin...
Definition: cv.hpp:5032
MS_ISB_mzXML_format
ISB mzXML format: Institute of Systems Biology mzXML file format.
Definition: cv.hpp:2155
UO_picomolal
picomolal: A molality unit which is equal to 10^[-12] m.
Definition: cv.hpp:12712
MS_ProteomeDiscoverer_Search_Modifications_Only_For_Identified_Proteins
ProteomeDiscoverer:Search Modifications Only For Identified Proteins: Influences the modifications se...
Definition: cv.hpp:5365
UNIMOD_dHex_2_Hex_3_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexNAc(2) Sulf.
Definition: cv.hpp:12127
MS_exponential
exponential: The mass scan is done in exponential mode.
Definition: cv.hpp:436
MS_6220_Time_of_Flight_LC_MS
6220 Time-of-Flight LC/MS: The 6220 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:2542
MS_param__y_ion_H2O_DEPRECATED
param: y ion-H2O DEPRECATED:
Definition: cv.hpp:3763
MS_TLF
TLF (time lag focusing): Energy focusing in a time-of-flight mass spectrometer that is accomplished b...
Definition: cv.hpp:1264
MS_protein_level_local_FDR
protein-level local FDR: Estimation of the local false discovery rate of proteins.
Definition: cv.hpp:7384
MS_liquid_secondary_ionization
liquid secondary ionization: The ionization of any species by the interaction of a focused beam of io...
Definition: cv.hpp:1603
MS_file_format
file format: Format of data files.
Definition: cv.hpp:4618
UNIMOD_Hex_2_HexNAc_2_Sulf_1_
Hex(2)HexNAc(2)Sulf(1): Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:11902
MS_enhanced_resolution_scan_OBSOLETE
enhanced resolution scan: Scan with enhanced resolution.
Definition: cv.hpp:2908
MS_group_representative
group representative: An arbitrary and optional flag applied to exactly one protein per group to indi...
Definition: cv.hpp:7501
MS_Empower
Empower: Waters Empower software for liquid chromatography and mass spectrometry acquisition.
Definition: cv.hpp:5638
UNIMOD_VFQQQTGG
VFQQQTGG: SUMOylation by SUMO-2/3 (formic acid cleavage).
Definition: cv.hpp:10192
UNIMOD_dHex_1_Hex_3_HexA_2_HexNAc_2_
dHex(1)Hex(3)HexA(2)HexNAc(2): DHex Hex(3) HexA(2) HexNAc(2).
Definition: cv.hpp:12199
MS_DESI
DESI (desorption electrospray ionization): Combination of electrospray and desorption ionization meth...
Definition: cv.hpp:6319
UO_image_resolution_unit
image resolution unit: An information unit which is a standard measure of the detail an image holds...
Definition: cv.hpp:13198
UNIMOD_Didehydroretinylidene
Didehydroretinylidene: 3,4-didehydroretinylidene.
Definition: cv.hpp:9256
MS_ProteomeDiscoverer_Use_Neutral_Loss_a_Ions
ProteomeDiscoverer:Use Neutral Loss a Ions: Determines whether a ions with neutral loss are used for ...
Definition: cv.hpp:5308
MS_Paragon__background_correction
Paragon: background correction: The Paragon method setting that controls whether the &#39;Background Corr...
Definition: cv.hpp:7579
UNIMOD_Gln__Asp
Gln->Asp: Gln->Asp substitution.
Definition: cv.hpp:10849
MS_mass_analyzer_type
mass analyzer type: Mass analyzer separates the ions according to their mass-to-charge ratio...
Definition: cv.hpp:1759
MS_AXIMA_Assurance_Linear_MALDI_TOF
AXIMA Assurance Linear MALDI-TOF: Shimadzu Biotech AXIMA Assurance Linear MALDI-TOF MS...
Definition: cv.hpp:2344
UNIMOD_LG_anhyropyrrole
LG-anhyropyrrole: Levuglandinyl-lysine anhyropyrrole adduct.
Definition: cv.hpp:10237
MS_MS_MS_in_Space_OBSOLETE
MS/MS in Space: A tandem mass spectrometry method in which product ion spectra are recorded in m/z an...
Definition: cv.hpp:1423
MS_acquisition_software
acquisition software: Acquisition software.
Definition: cv.hpp:4606
MS_charge_remote_fragmentation_OBSOLETE
charge-remote fragmentation: A fragmentation of an even-electron ion in which the cleaved bond is not...
Definition: cv.hpp:1000
UNIMOD_2_dimethylsuccinyl
2-dimethylsuccinyl: S-(2-dimethylsuccinyl) cysteine.
Definition: cv.hpp:11095
MS_Progenesis_protein_group_raw_abundance
Progenesis:protein group raw abundance: The data type raw abundance for protein groups produced by Pr...
Definition: cv.hpp:7849
MS_raw_files_group_attribute
raw files group attribute: Attribute describing, how raw files build a raw file group.
Definition: cv.hpp:5725
MS_MRM_spectrum
MRM spectrum (SRM spectrum): Spectrum obtained when data are acquired from specific product ions corr...
Definition: cv.hpp:2242
UNIMOD_NO_SMX_SEMD
NO_SMX_SEMD: Nitroso Sulfamethoxazole Sulphenamide thiol adduct.
Definition: cv.hpp:9946
MS_SEQUEST_deltacnstar
SEQUEST:deltacnstar: The SEQUEST result &#39;DeltaCnStar&#39;.
Definition: cv.hpp:7039
UNIMOD_Pro__Pyrrolidone
Pro->Pyrrolidone: Pyrrolidone from Proline.
Definition: cv.hpp:9097
MS_MALDI_Synapt_G2_S_MS
MALDI Synapt G2-S MS: Waters oa-ToF based MALDI Synapt G2-S MS.
Definition: cv.hpp:5578
MS_completion_time
completion time: The time that a data processing action was finished.
Definition: cv.hpp:2758
MS_electrostatic_energy_analyzer
electrostatic energy analyzer: A device consisting of conducting parallel plates, concentric cylinder...
Definition: cv.hpp:1066
UO_micromole
micromole: A substance unit equal to a millionth of a mol or 10^[-6] mol.
Definition: cv.hpp:12613
MS_Variance_stabilizing_normalization
Variance stabilizing normalization: The model incorporates data calibration (normalization), a model for the dependence of the variance on the mean intensity, and a variance stabilizing data transformation.
Definition: cv.hpp:6922
UO_kilovolt
kilovolt: An electric potential difference unit which is equal to one thousand volts or 10^[3] V...
Definition: cv.hpp:13234
UNIMOD_Glu__pyro_Glu_Methyl_2H_2_13C_1_
Glu->pyro-Glu+Methyl:2H(2)13C(1): Pyro-Glu from E + Methylation Medium.
Definition: cv.hpp:12493
MS_PIA_used_top_identifications_for_FDR
PIA:used top identifications for FDR: The number of top identifications per spectrum used for the FDR...
Definition: cv.hpp:7471
MS_ProteinExtractor_MaxProteinMass
ProteinExtractor:MaxProteinMass: The maximum considered mass for a protein.
Definition: cv.hpp:4525
UNIMOD_Propargylamine
Propargylamine: Propargylamine.
Definition: cv.hpp:10267
UNIMOD_Phe__His
Phe->His: Phe->His substitution.
Definition: cv.hpp:10597
UNIMOD_OxArgBiotinRed
OxArgBiotinRed: Oxidized arginine biotinylated with biotin-LC-hydrazide, reduced. ...
Definition: cv.hpp:8641
MS_three_sample_run
three sample run: The raw file contains the run of three samples (e.g. 3-plex SILAC).
Definition: cv.hpp:5716
UNIMOD_Hex_4_HexNAc_4_Sulf_1_
Hex(4)HexNAc(4)Sulf(1): Hex(4) HexNAc(4) Sulf.
Definition: cv.hpp:11581
UNIMOD_Hex_1_HexNAc_1_NeuGc_5_
Hex(1)HexNAc(1)NeuGc(5): Hex HexNAc NeuGc(5).
Definition: cv.hpp:12373
UNIMOD_Biotin_Cayman_10141
Biotin:Cayman-10141: Was 15dB-biotin.
Definition: cv.hpp:9448
MS_ProteomeDiscoverer_Maximum_Protein_References_Per_Peptide
ProteomeDiscoverer:Maximum Protein References Per Peptide: Maximum number of proteins that a single i...
Definition: cv.hpp:5284
MS_NICI
NICI (Negative Ion chemical ionization): Chemical ionization that results in the formation of negativ...
Definition: cv.hpp:1174
MS_PDA
PDA (photodiode array detector): An array detector used to record spectra in the ultraviolet and visi...
Definition: cv.hpp:2377
MS_protein_level_statistical_threshold
protein-level statistical threshold: Estimated statistical threshold at protein-level.
Definition: cv.hpp:7747
UO_pressure_unit
pressure unit: A unit which is a standard measure of the force applied to a given area...
Definition: cv.hpp:12823
UNIMOD_Hex_2_HexA_1_NeuAc_1_Pent_1_Sulf_1_
Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1): Hex(2) HexA NeuAc Pent Sulf.
Definition: cv.hpp:11992
MS_protein_group_attribute
protein group attribute: Attribute describing a protein group.
Definition: cv.hpp:6628
MS_accurate_mass_OBSOLETE
accurate mass: An experimentally determined mass that is can be to determine a unique elemental formu...
Definition: cv.hpp:838
UNIMOD_SulfanilicAcid
SulfanilicAcid: Light Sulfanilic Acid (SA) C12.
Definition: cv.hpp:8917
MS_Mascot_PTM_site_assignment_confidence
Mascot:PTM site assignment confidence: Relative probability that PTM site assignment is correct...
Definition: cv.hpp:6322
UNIMOD_Xlink_EGS
Xlink:EGS: Monolink of EGS crosslinker to Lys or N-terminus.
Definition: cv.hpp:10393
MS_TOPP_FeatureFinderIsotopeWavelet
TOPP FeatureFinderIsotopeWavelet: Detects two-dimensional features in uncentroided LC-MS data with a ...
Definition: cv.hpp:6793
MS_decoy_DB_from_IPI_rat_OBSOLETE
decoy DB from IPI_rat: Decoy database from a International Protein Index database for Rattus norvegic...
Definition: cv.hpp:4126
MS_appearance_energy_OBSOLETE
appearance energy: The minimum energy that must be imparted to an atom or molecule to produce a speci...
Definition: cv.hpp:844
MS_esquire_6000
esquire 6000: Bruker Daltonics&#39; esquire 6000: linear ion trap, ESI, MALDI, Nanospray, APCI, APPI.
Definition: cv.hpp:679
UNIMOD_Biotin_PEG_PRA
Biotin-PEG-PRA: Biotin polyethyleneoxide (n=3) alkyne.
Definition: cv.hpp:10126
MS_protein_level_p_value
protein-level p-value: Estimation of the p-value for proteins.
Definition: cv.hpp:5869
MS_Mascot_IncludeErrorTolerantMatches
Mascot:IncludeErrorTolerantMatches: If true, then the search results are error tolerant and peptide m...
Definition: cv.hpp:4225
MS_linear_OBSOLETE
linear: The mass scan is done in linear mode.
Definition: cv.hpp:439
UNIMOD_DAET
DAET: Phosphorylation to amine thiol.
Definition: cv.hpp:8776
MS_peptide_raw_area_OBSOLETE
peptide raw area: Peptide raw area.
Definition: cv.hpp:3697
MS_MBMS_OBSOLETE
MBMS (molecular beam mass spectrometry): A mass spectrometry technique in which the sample is introdu...
Definition: cv.hpp:922
MS_FWHM
FWHM (full width at half-maximum): A measure of resolution represented as width of the peak at half p...
Definition: cv.hpp:412
UNIMOD_dHex_1_Hex_3_HexNAc_4_NeuAc_1_
dHex(1)Hex(3)HexNAc(4)NeuAc(1): DHex Hex(3) HexNAc(4) NeuAc.
Definition: cv.hpp:11674
MS_PROTEINEER_dp
PROTEINEER dp: Bruker PROTEINEER dp software.
Definition: cv.hpp:2707
UNIMOD_Cys__Glu
Cys->Glu: Cys->Glu substitution.
Definition: cv.hpp:10486
MS_ANOVA_p_value
ANOVA p-value: Global datatype: p-value of ANOVA of group means (e.g. Progenesis).
Definition: cv.hpp:5818
UNIMOD_Pro__Pyrrolidinone
Pro->Pyrrolidinone: Proline oxidation to pyrrolidinone.
Definition: cv.hpp:9073
UNIMOD_HydroxymethylOP
HydroxymethylOP: 2-ammonio-6-[4-(hydroxymethyl)-3-oxidopyridinium-1-yl]- hexanoate.
Definition: cv.hpp:10102
UNIMOD_Ala__Pro
Ala->Pro: Ala->Pro substitution.
Definition: cv.hpp:9463
MS_photomultiplier
photomultiplier: A detector for conversion of the ion/electron signal into photon(s) which are then a...
Definition: cv.hpp:517
MS_hydrogen_deuterium_exchange_OBSOLETE
hydrogen/deuterium exchange: Exchange of hydrogen atoms with deuterium atoms in a molecule or pre-for...
Definition: cv.hpp:1696
MS_ESI
ESI (electrospray ionization): A process in which ionized species in the gas phase are produced from ...
Definition: cv.hpp:349
MS_PeptideShaker_peptide_score
PeptideShaker peptide score: The probability based PeptideShaker peptide score.
Definition: cv.hpp:7696
MS_charge_induced_fragmentation_OBSOLETE
charge-induced fragmentation: Fragmentation of an odd electron ion in which the cleaved bond is adjac...
Definition: cv.hpp:1660
UNIMOD_QEQTGG
QEQTGG: SUMOylation by SUMO-1.
Definition: cv.hpp:10087
MS_PTM_localization_result_list_statistic
PTM localization result list statistic: Statistic for all items derived from a post-translational mod...
Definition: cv.hpp:8371
MS_spectrum_title
spectrum title: A free-form text title describing a spectrum.
Definition: cv.hpp:2923
MS_Q_Exactive
Q Exactive: Thermo Scientific Q Exactive.
Definition: cv.hpp:5989
MS_full_width_at_half_maximum
full width at half-maximum: A measure of resolution represented as width of the peak at half peak hei...
Definition: cv.hpp:409
UO_molar
molar: A unit of concentration which expresses a concentration of 1 mole of solute per liter of solut...
Definition: cv.hpp:12682
MS_MyriMatch
MyriMatch: Tabb Lab software for directly comparing peptides in a database to tandem mass spectra...
Definition: cv.hpp:4999
MS_ProteinExtractor_IncludeIdentified
ProteinExtractor:IncludeIdentified: Flag indicating if identified proteins should be included...
Definition: cv.hpp:4519
UO_unit_of_normality
unit of normality: A unit of concentration which highlights the chemical nature of salts...
Definition: cv.hpp:12718
MS_high_intensity_threshold
high intensity threshold: Threshold above which some action is taken.
Definition: cv.hpp:2413
MS_linked_scan_at_constant_b_e_OBSOLETE
linked scan at constant b/e: A linked scan at constant B/E may be performed on a sector mass spectrom...
Definition: cv.hpp:1408
MS_number_of_molecular_hypothesis_considered
number of molecular hypothesis considered: Number of Molecular Hypothesis Considered - This is the nu...
Definition: cv.hpp:3838
UNIMOD_Hex_4_HexNAc_6_
Hex(4)HexNAc(6): Hex(4) HexNAc(6).
Definition: cv.hpp:11740
MS_ProteomeDiscoverer_2__Static_Modification_OBSOLETE
ProteomeDiscoverer:2. Static Modification: ProteomeDiscoverer&#39;s 2nd static post-translational modific...
Definition: cv.hpp:6529
MS_programmer
programmer: Programmer role.
Definition: cv.hpp:4072
MS_frag__iTRAQ_8plex_reporter_ion
frag: iTRAQ 8plex reporter ion: Standard reporter ion for iTRAQ 8Plex. The value slot holds the integ...
Definition: cv.hpp:8308
UNIMOD_Hex_4_HexNAc_5_
Hex(4)HexNAc(5): Hex(4) HexNAc(5).
Definition: cv.hpp:11632
std::multimap< std::string, CVID > otherRelations
Definition: cv.hpp:13392
UNIMOD_Trp__Ala
Trp->Ala: Trp->Ala substitution.
Definition: cv.hpp:10984
UO_watt
watt: A power unit which is equal to the power used when work is done at the rate of 1 joule per seco...
Definition: cv.hpp:12838
MS_SCION_SQ
SCION SQ: Bruker Daltonics&#39; SCION SQ: GC-single quadrupole.
Definition: cv.hpp:7177
UNIMOD_Hex_10_Phos_3_
Hex(10)Phos(3): Hex(10) Phos(3).
Definition: cv.hpp:12367
UNIMOD_CAF
CAF: Sulfonation of N-terminus.
Definition: cv.hpp:8893
UNIMOD_Trp__Phe
Trp->Phe: Trp->Phe substitution.
Definition: cv.hpp:10993
MS_protein_value__mean_of_peptide_ratios
protein value: mean of peptide ratios: Protein quantification value calculated as mean of peptide rat...
Definition: cv.hpp:5836
UO_nanosievert
nanosievert: A dose equivalent unit which is equal to one thousandth of a millionth of a sievert or 1...
Definition: cv.hpp:12925
MS_dried_droplet_MALDI_matrix_preparation
dried droplet MALDI matrix preparation: Dried droplet in MALDI matrix preparation.
Definition: cv.hpp:3052
UNIMOD_Hex_3_HexNAc_4_
Hex(3)HexNAc(4): Biantennary (-2 galactose).
Definition: cv.hpp:8971
UNIMOD_GIST_Quat_2H_9_
GIST-Quat:2H(9): Quaternary amine labeling reagent heavy form (+9amu), N-term & K.
Definition: cv.hpp:8578
UNIMOD_Cys__CamSec
Cys->CamSec: Sec Iodoacetamide derivative.
Definition: cv.hpp:10363
MS_Agilent_instrument_model
Agilent instrument model: Agilent instrument model.
Definition: cv.hpp:1918
MS_Acquity_UPLC_FLR
Acquity UPLC FLR: Acquity UPLC Fluorescence Detector.
Definition: cv.hpp:3004
MS_SEQUEST_TopNumber
SEQUEST:TopNumber: Specify "number" as value of the CVParam.
Definition: cv.hpp:3625
MS_translation_table_description
translation table description: A URL that describes the translation table used to translate the nucle...
Definition: cv.hpp:4510
MS_PTM_localization_confidence_metric
PTM localization confidence metric: Localization confidence metric for a post translational modificat...
Definition: cv.hpp:7909
UNIMOD_Malonyl
Malonyl: Malonylation of C and S residues.
Definition: cv.hpp:9955
MS_array_detector
array detector: Detector comprising several ion collection elements, arranged in a line or grid where...
Definition: cv.hpp:1456
MS_percolator_score
percolator:score: Percolator:score.
Definition: cv.hpp:4723
MS_PRIDE_experiment_URI
PRIDE experiment URI: URI that allows the access to one experiment in the PRIDE database.
Definition: cv.hpp:6049
MS_32_bit_integer
32-bit integer: Signed 32-bit little-endian integer.
Definition: cv.hpp:2011
MS_Dionex_instrument_model
Dionex instrument model: Dionex instrument model.
Definition: cv.hpp:1921
UNIMOD_dHex_2_Hex_3_HexNAc_3_NeuAc_1_
dHex(2)Hex(3)HexNAc(3)NeuAc(1): DHex(2) Hex(3) HexNAc(3) NeuAc.
Definition: cv.hpp:12325
MS_protein_level_e_value
protein-level e-value: Estimation of the e-value for proteins.
Definition: cv.hpp:5875
MS_non_identified_ion
non-identified ion: Non-identified ion.
Definition: cv.hpp:4000
MS_Trapper
Trapper: A software program for converting Agilent MassHunter format to mzXML or mzML. Trapper was originally developed at the Institute for Systems Biology.
Definition: cv.hpp:2116
MS_mass_analyzed_ion_kinetic_energy_spectrometry_OBSOLETE
mass analyzed ion kinetic energy spectrometry: Spectra that are obtained from a sector mass spectrome...
Definition: cv.hpp:1147
MS_impact_II
impact II: Bruker Daltonics&#39; impact II.
Definition: cv.hpp:8299
UNIMOD_HexNAc_1_NeuGc_2_
HexNAc(1)NeuGc(2): HexNAc NeuGc(2).
Definition: cv.hpp:11911
UNIMOD_Gln__Xle
Gln->Xle: Gln->Leu/Ile substitution.
Definition: cv.hpp:9715
UNIMOD_Gln__Met
Gln->Met: Gln->Met substitution.
Definition: cv.hpp:10858
UNIMOD_His__Phe
His->Phe: His->Phe substitution.
Definition: cv.hpp:10663
UNIMOD_Nethylmaleimide_water
Nethylmaleimide+water: Nethylmaleimidehydrolysis.
Definition: cv.hpp:8998
UO_microvolt
microvolt: An electric potential difference unit which is equal to one millionth of a volt or 10^[-6]...
Definition: cv.hpp:13237
MS_SEQUEST_sf
SEQUEST:sf: The SEQUEST result &#39;Sf&#39;.
Definition: cv.hpp:3787
MS_BioAnalyst
BioAnalyst: Applied Biosystems|MDS SCIEX software for bio-related data exploration.
Definition: cv.hpp:2518
MS_transition
transition: A set of two m/z values corresponding to the precursor m/z and a fragment m/z that in com...
Definition: cv.hpp:3277
MS_zlib_compression
zlib compression: Zlib.
Definition: cv.hpp:2179
MS_molecular_beam_mass_spectrometry_OBSOLETE
molecular beam mass spectrometry: A mass spectrometry technique in which the sample is introduced int...
Definition: cv.hpp:919
UNIMOD_Hex_2_HexA_1_Pent_1_Sulf_1_
Hex(2)HexA(1)Pent(1)Sulf(1): Hex(2) HexA Pent Sulf.
Definition: cv.hpp:11857
MS_proteomics_solution_1
proteomics solution 1: Applied Biosystems/MDS SCIEX Proteomics Solution 1 MS.
Definition: cv.hpp:766
MS_Mascot_RequireBoldRed
Mascot:RequireBoldRed: Only used in Peptide Summary and Select Summary reports. If true...
Definition: cv.hpp:4219
MS_adiabatic_ionization
adiabatic ionization: A process whereby an electron is removed from an atom, ion, or molecule to prod...
Definition: cv.hpp:1561
MS_param__internal_yb_ion
param: internal yb ion: Parameter information, type of product: internal yb ion.
Definition: cv.hpp:4459
MS_consecutive_reaction_monitoring_OBSOLETE_1000244
consecutive reaction monitoring: MSn experiment with three or more stages of m/z separation and in wh...
Definition: cv.hpp:1006
UNIMOD_Biotin_Thermo_21901_H2O
Biotin:Thermo-21901+H2O: Maleimide-Biotin + Water.
Definition: cv.hpp:10435
MS_ProteoGrouper_PDH_score
ProteoGrouper:PDH score: A score assigned to a single protein accession (modelled as ProteinDetection...
Definition: cv.hpp:6994
MS_PRIDE_project_URI
PRIDE project URI: URI that allows the access to one project in the PRIDE database.
Definition: cv.hpp:6052
MS_DB_sequence_filter_pattern
DB sequence filter pattern: DB sequence filter pattern.
Definition: cv.hpp:4786
MS_beta_cleavage_OBSOLETE
beta-cleavage: A homolytic cleavage where the bond fission occurs between at an atom removed from the...
Definition: cv.hpp:1654
UO_cell_concentration_unit
cell concentration unit: A concentration unit which denotes the average cell number in a given volume...
Definition: cv.hpp:13090
MS_ProteomeDiscoverer_Amanda_high_confidence_threshold
ProteomeDiscoverer:Amanda:high confidence threshold: Strict confidence probability score...
Definition: cv.hpp:7240
MS_in_source_collision_induced_dissociation
in-source collision-induced dissociation: The dissociation of an ion as a result of collisional excit...
Definition: cv.hpp:5896
MS_ion_neutral_species_reaction_OBSOLETE
ion/neutral species reaction: A process wherein a charged species interacts with a neutral reactant t...
Definition: cv.hpp:1711
UNIMOD_IMID_2H_4_
IMID:2H(4): IMID d4.
Definition: cv.hpp:8608
MS_TripleTOF_6600
TripleTOF 6600: SCIEX TripleTOF 6600, a quadrupole - quadrupole - time-of-flight mass spectrometer...
Definition: cv.hpp:7894
MS_ProteomeDiscoverer_Dynamic_Modification
ProteomeDiscoverer:Dynamic Modification: Determine dynamic post-translational modifications (PTMs)...
Definition: cv.hpp:5188
MS_MassIVE_dataset_identifier
MassIVE dataset identifier: Dataset identifier issued by the MassIVE repository. A dataset can refer ...
Definition: cv.hpp:7753
UNIMOD_Glu__pyro_Glu_Methyl
Glu->pyro-Glu+Methyl: Pyro-Glu from E + Methylation.
Definition: cv.hpp:12490
UNIMOD_Met__Asn
Met->Asn: Met->Asn substitution.
Definition: cv.hpp:10759
MS_ProteomeDiscoverer_Xtract_Overlapping_Remainder
ProteomeDiscoverer:Xtract:Overlapping Remainder: Fraction of the more abundant peak that an overlappi...
Definition: cv.hpp:5170
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_
Hex(1)HexNAc(1)NeuAc(2): Hex1HexNAc1NeuAc2.
Definition: cv.hpp:8755
MS_CRM_spectrum
CRM spectrum: Spectrum generated from MSn experiment with three or more stages of m/z separation and ...
Definition: cv.hpp:2224
UNIMOD_Asn__Met
Asn->Met: Asn->Met substitution.
Definition: cv.hpp:10792
MS_focal_plane_collector
focal plane collector: A detector for spatially disperse ion beams in which all ions simultaneously i...
Definition: cv.hpp:1465
UNIMOD_Iminobiotin
Iminobiotin: Iminobiotinylation.
Definition: cv.hpp:8590
UNIMOD_Cation_Ag
Cation:Ag: Replacement of proton by silver.
Definition: cv.hpp:10258
MS_binary_data_array
binary data array: A data array of values.
Definition: cv.hpp:1993
UNIMOD_Hex_7_HexNAc_2_Phos_2_
Hex(7)HexNAc(2)Phos(2): Hex(7) HexNAc(2) Phos(2).
Definition: cv.hpp:11650
MS_ProteomeDiscoverer_Use_Neutral_Loss_z_Ions
ProteomeDiscoverer:Use Neutral Loss z Ions: Determines whether z ions with neutral loss are used for ...
Definition: cv.hpp:5317
UO_millivolt
millivolt: An electric potential difference unit which is equal to one thousandth of a volt or 10^[-3...
Definition: cv.hpp:13231
UNIMOD_Methyl_2H_3_
Methyl:2H(3): Deuterated methyl ester.
Definition: cv.hpp:8947
MS_microchannel_plate_detector
microchannel plate detector: A thin plate that contains a closely spaced array of channels that each ...
Definition: cv.hpp:508
MS_surface_enhanced_laser_desorption_ionization
surface enhanced laser desorption ionization: The formation of ionized species in the gas phase from ...
Definition: cv.hpp:1213
UNIMOD_spermine
spermine: Spermine adduct.
Definition: cv.hpp:11410
UNIMOD_dHex_2_Hex_1_HexNAc_1_Kdn_1_
dHex(2)Hex(1)HexNAc(1)Kdn(1): DHex(2) Hex HexNAc Kdn.
Definition: cv.hpp:11944
MS_msPrefix_precursor_recalculation
msPrefix precursor recalculation: Recalculates one or more precursor selected ions by peak detection ...
Definition: cv.hpp:2863
UNIMOD_Can_FP_biotin
Can-FP-biotin: 6-N-biotinylaminohexyl isopropyl phosphate.
Definition: cv.hpp:9022
MS_ion_mobility_drift_time
ion mobility drift time: Drift time of an ion or spectrum of ions as measured in an ion mobility mass...
Definition: cv.hpp:7720
MS_TPP
TPP (Trans-Proteomic Pipeline): A suite of open source tools for the processing of MS2 proteomics dat...
Definition: cv.hpp:7147
UNIMOD_Ala__Gln
Ala->Gln: Ala->Gln substitution.
Definition: cv.hpp:10468
UNIMOD_O_Isopropylmethylphosphonate
O-Isopropylmethylphosphonate: O-Isopropylmethylphosphonylation.
Definition: cv.hpp:9910
MS_scan_number_only_nativeID_format
scan number only nativeID format: Native format defined by scan=xsd:nonNegativeInteger.
Definition: cv.hpp:2848
MS_ProteoWizard_idconvert
ProteoWizard idconvert: Converts, filters, and processes identifications from shotgun proteomics expe...
Definition: cv.hpp:6907
MS_SEQUEST_OutputLines
SEQUEST:OutputLines: Number of peptide results to show.
Definition: cv.hpp:3370
MS_single_ion_monitoring_OBSOLETE
single ion monitoring: The operation of a mass spectrometer to monitor a single ion rather than scann...
Definition: cv.hpp:463
UNIMOD_ZGB
ZGB: NHS ester linked Green Fluorescent Bodipy Dye.
Definition: cv.hpp:10075
UNIMOD_Hex_3_HexNAc_3_Pent_1_
Hex(3)HexNAc(3)Pent(1): Hex(3) HexNAc(3) Pent.
Definition: cv.hpp:11515
MS_SEQUEST_out_folder
SEQUEST out folder: Source file for this mzIdentML was a SEQUEST folder with its out files...
Definition: cv.hpp:4006
MS_PEAKS_proteinScore
PEAKS:proteinScore: The PEAKS protein &#39;-10lgP Score&#39;.
Definition: cv.hpp:6118
UNIMOD_Fluoro
Fluoro: Fluorination.
Definition: cv.hpp:8665
UO_chroma_sampling_unit
chroma sampling unit: An image resolution unit which is a standard measure of the amount of spatial d...
Definition: cv.hpp:13201
MS_detector_attribute
detector attribute: Detector attribute recognized as a value.
Definition: cv.hpp:1891
UNIMOD_Biotin_Thermo_33033_H
Biotin:Thermo-33033-H: Sulfo-SBED Label Photoreactive Biotin Crosslinker minus Hydrogen.
Definition: cv.hpp:11068
MS_frag__b_ion___NH3
frag: b ion - NH3: Ion b-NH3 fragmentation information, type of product: b ion without ammonia...
Definition: cv.hpp:3976
UNIMOD_Dimethyl_2H_6_
Dimethyl:2H(6): Dimethyl-Medium.
Definition: cv.hpp:11152
UNIMOD_Gln__Thr
Gln->Thr: Gln->Thr substitution.
Definition: cv.hpp:10867
MS______ALIV_____P_
(?<=[ALIV])(?!P): Regular expression for leukocyte elastase.
Definition: cv.hpp:6136
MS_collision_quadrupole
collision quadrupole: A transmission quadrupole to which an oscillating potential is applied so as to...
Definition: cv.hpp:1195
MS_jPOST_dataset_URI
jPOST dataset URI: URI that allows the access to one dataset in the jPOST repository. A dataset can refer to either a single sample as part of a study, or all samples that are part of the study corresponding to a publication.
Definition: cv.hpp:8197
MS_Pro_ID
Pro ID: Applied Biosystems|MDS SCIEX software for protein identification.
Definition: cv.hpp:2521
MS_cross_linking_search
cross-linking search: Cross-linking search performed.
Definition: cv.hpp:7774
MS_Mascot
Mascot: The name of the Mascot search engine.
Definition: cv.hpp:3898
MS_ProteomeDiscoverer_Number_of_Spectra_Processed_At_Once
ProteomeDiscoverer:Number of Spectra Processed At Once: Number of spectra processed at once in a Prot...
Definition: cv.hpp:8002
UNIMOD_Dimethyl_2H_4_13C_2_
Dimethyl:2H(4)13C(2): DiMethyl-C13HD2.
Definition: cv.hpp:9382
UNIMOD_His__Trp
His->Trp: His->Trp substitution.
Definition: cv.hpp:10684
UNIMOD_Met__Pro
Met->Pro: Met->Pro substitution.
Definition: cv.hpp:10762
MS_LOWESS_smoothing
LOWESS smoothing: Reduces intensity spikes by applying a modelling method known as locally weighted p...
Definition: cv.hpp:2869
MS_protein_group_level_local_FDR
protein group-level local FDR: Estimation of the local false discovery rate of protein groups...
Definition: cv.hpp:7402
MS_TripleTOF_4600
TripleTOF 4600: SCIEX TripleTOF 4600 time-of-flight mass spectrometer.
Definition: cv.hpp:8044
UNIMOD_MicrocinC7
MicrocinC7: (3-aminopropyl)(L-aspartyl-1-amino)phosphoryl-5-adenosine.
Definition: cv.hpp:9268
MS_ion_neutral_species_exchange_reaction_OBSOLETE
ion/neutral species exchange reaction: In this reaction an association reaction is accompanied by the...
Definition: cv.hpp:1714
UNIMOD_Ammonium
Ammonium: Replacement of proton with ammonium ion.
Definition: cv.hpp:10318
UNIMOD_HN3_mustard
HN3_mustard: Modification by hydroxylated tris-(2-chloroethyl)amine (HN-3).
Definition: cv.hpp:11338
MS_fragment_mass_type_mono
fragment mass type mono: Mass type setting for fragment mass was monoisotopic.
Definition: cv.hpp:4042
UNIMOD_Phycoerythrobilin
Phycoerythrobilin: Phycoerythrobilin.
Definition: cv.hpp:9139
UNIMOD_Pyridylacetyl
Pyridylacetyl: Pyridylacetyl.
Definition: cv.hpp:8476
MS_mass_defect_OBSOLETE
mass defect: The difference between the monoisotopic and nominal mass of a molecule or atom...
Definition: cv.hpp:907
UO_energy_unit
energy unit: A unit which is a standard measure of the work done by a certain force (gravitational...
Definition: cv.hpp:12829
MS_spectrum_from_database_string_nativeID_format
spectrum from database string nativeID format: Native format defined by databasekey=xsd:string.
Definition: cv.hpp:4843
MS_no_modification_threshold
no modification threshold: No statistical threshold for accepting or rejecting that a modification po...
Definition: cv.hpp:8317
MS_number_of_detector_counts
number of detector counts: The number of counted events observed in one or a group of elements of a d...
Definition: cv.hpp:580
MS_Linked_Scan_at_Constant_B_1__E_E0___1_2___E_OBSOLETE
Linked Scan at Constant B[1-(E/E0)]^1/2 / E: A linked scan performed on a sector instrument that inco...
Definition: cv.hpp:1417
MS_Mascot_identity_threshold
Mascot:identity threshold: The Mascot result &#39;identity threshold&#39;.
Definition: cv.hpp:4363
MS_Comet
Comet: Comet open-source sequence search engine developed at the University of Washington.
Definition: cv.hpp:7042
UNIMOD_GGQ
GGQ: SUMOylation leaving GlyGlyGln.
Definition: cv.hpp:11155
MS_TOPP_FeatureFinderMetabo
TOPP FeatureFinderMetabo: Detects two-dimensional features in centroided LC-MS data of metabolites...
Definition: cv.hpp:6796
UNIMOD_Phe__Tyr
Phe->Tyr: Phe->Tyr substitution.
Definition: cv.hpp:9541
MS_Bruker_BAF_nativeID_format__combined_spectra
Bruker BAF nativeID format, combined spectra: Bruker BAF comma separated list of spectra that have be...
Definition: cv.hpp:8254
UNIMOD_Ser__Arg
Ser->Arg: Ser->Arg substitution.
Definition: cv.hpp:9775
MS_ProteomeDiscoverer_Spectrum_Grouper_Allow_Mass_Analyzer_Mismatch
ProteomeDiscoverer:Spectrum Grouper:Allow Mass Analyzer Mismatch: Determines whether the fragment spe...
Definition: cv.hpp:5143
MS_quantitation_software_comment_or_customizations
quantitation software comment or customizations: Quantitation software comment or any customizations ...
Definition: cv.hpp:5752
MS_Sequence_database_filters
Sequence database filters: Sequence database filters which actually can contains values, e.g. to limit PI value of the sequences used to search.
Definition: cv.hpp:4783
MS_ultima
ultima: IonSpec Ultima MS.
Definition: cv.hpp:808
MS_TOPP_NoiseFilterGaussian
TOPP NoiseFilterGaussian: Removes noise from profile spectra by using a gaussian smoothing.
Definition: cv.hpp:6685
MS_Gaussian_smoothing
Gaussian smoothing: Reduces intensity spikes by convolving the data with a one-dimensional Gaussian f...
Definition: cv.hpp:2872
MS_Bruker_FID_nativeID_format__combined_spectra
Bruker FID nativeID format, combined spectra: Bruker FID comma separated list of spectra that have be...
Definition: cv.hpp:8257
MS_chemical_compound_attribute
chemical compound attribute: A describable property of a chemical compound.
Definition: cv.hpp:3127
MS_LTQ_Orbitrap_Elite
LTQ Orbitrap Elite: Thermo Scientific second generation Velos and Orbitrap.
Definition: cv.hpp:5986
MS_Comet_expectation_value
Comet:expectation value: The Comet result &#39;Expectation value&#39;.
Definition: cv.hpp:7060
MS_iTRAQ_reagent_116
iTRAQ reagent 116: The name of the sample labelled with the iTRAQ reagent 116.
Definition: cv.hpp:8173
MS_Shimadzu_MALDI_TOF_instrument_model
Shimadzu MALDI-TOF instrument model: Shimadzu MALDI-TOF instrument model.
Definition: cv.hpp:2314
UO_square_millimeter
square millimeter: An area unit which is equal to one millionth of a square meter or 10^[-6] m^[2]...
Definition: cv.hpp:12742
UNIMOD_dHex_2_Hex_5_HexNAc_3_Pent_1_
dHex(2)Hex(5)HexNAc(3)Pent(1): DHex(2) Hex(5) HexNAc(3) Pent.
Definition: cv.hpp:11722
MS_SpectrumMill_SPI
SpectrumMill:SPI: SpectrumMill SPI score (%).
Definition: cv.hpp:4960
UNIMOD_Biotin_Thermo_21330
Biotin:Thermo-21330: Biotin_PEG4.
Definition: cv.hpp:11416
MS_DB_accession_filter_string
DB accession filter string: DB accession filter string.
Definition: cv.hpp:4789
UNIMOD_Amino
Amino: Tyrosine oxidation to 2-aminotyrosine.
Definition: cv.hpp:9034
MS_source_sprayer_type
source sprayer type: The source sprayer type.
Definition: cv.hpp:6064
MS_decoy_DB_from_IPI_human_OBSOLETE
decoy DB from IPI_human: Decoy database from a International Protein Index database for Homo sapiens...
Definition: cv.hpp:4150
MS_high_intensity_data_point_removal
high intensity data point removal: The removal of very high intensity data points.
Definition: cv.hpp:2755
MS_sample_attribute
sample attribute: Sample properties that are associated with a value.
Definition: cv.hpp:2101
MS_ionization_cross_section_OBSOLETE
ionization cross section: A measure of the probability that a given ionization process will occur whe...
Definition: cv.hpp:886
MS_ProteinScape_input_parameter
ProteinScape input parameter: Search engine input parameters specific to ProteinScape.
Definition: cv.hpp:6592
MS_FI
FI (field ionization): The removal of electrons from any species by interaction with a high electric ...
Definition: cv.hpp:1093
UNIMOD_Val__Met
Val->Met: Val->Met substitution.
Definition: cv.hpp:9817
MS_ultraflex
ultraflex: Bruker Daltonics&#39; ultraflex: MALDI TOF.
Definition: cv.hpp:811
UNIMOD_dHex_2_Hex_4_HexNAc_3_NeuAc_1_Sulf_1_
dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1): DHex(2) Hex(4) HexNAc(3) NeuAc Sulf.
Definition: cv.hpp:11770
UNIMOD_Hex_1_HexNAc_2_dHex_2_
Hex(1)HexNAc(2)dHex(2): Hex1HexNAc2dHex2.
Definition: cv.hpp:8743
MS_SILAC_reagent
SILAC reagent: Stable isotope labeling with amino acids in cell culture reagent.
Definition: cv.hpp:8128
MS_denominator_data_type_attribute
denominator data type attribute: Attribute describing the data type of the denominator of a ratio...
Definition: cv.hpp:6745
UNIMOD_His__Ala
His->Ala: His->Ala substitution.
Definition: cv.hpp:10654
MS_ProteinScape_Gel
ProteinScape Gel: Source data for this mzIdentML was a ProteinScape Gel.
Definition: cv.hpp:4096
MS_sample
sample: Terms to describe the sample.
Definition: cv.hpp:1813
MS_two_dimensional_gas_chromatography_with_fixed_modulation_time
two-dimensional gas chromatography with fixed modulation time: Two-dimensional gas chromatography whe...
Definition: cv.hpp:6547
UNIMOD_Biotin_HPDP
Biotin-HPDP: Pierce EZ-Link Biotin-HPDP.
Definition: cv.hpp:8929
MS_max_peak_picking
max peak picking (height peak picking): Spectral peak processing conducted on the acquired data to co...
Definition: cv.hpp:2947
MS_modification_specificity_peptide_N_term
modification specificity peptide N-term: As parameter for search engine: apply the modification only ...
Definition: cv.hpp:3850
MS_micrOTOF_II
micrOTOF II: Bruker Daltonics&#39; micrOTOF II: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:4867
MS_transition_purported_from_an_MS_MS_spectrum_on_a_different__specified_instrument
transition purported from an MS/MS spectrum on a different, specified instrument: The transition has ...
Definition: cv.hpp:3292
MS_PIA_PSM_sets_created
PIA:PSM sets created: Indicates whether PSM sets were created.
Definition: cv.hpp:7468
MS_minute_OBSOLETE
minute: Acquisition time in minutes.
Definition: cv.hpp:217
UNIMOD_GluGluGluGlu
GluGluGluGlu: Tetraglutamyl.
Definition: cv.hpp:9310
MS_ProteinExtractor_UseMascot
ProteinExtractor:UseMascot: Flag indicating to include Mascot scoring for calculation of the ProteinE...
Definition: cv.hpp:4531
MS_centroid_spectrum
centroid spectrum: Processing of profile data to produce spectra that contains discrete peaks of zero...
Definition: cv.hpp:559
MS_focal_plane_array
focal plane array: An array of detectors for spatially disperse ion beams in which all ions simultane...
Definition: cv.hpp:505
UNIMOD_Pro__pyro_Glu
Pro->pyro-Glu: Proline oxidation to pyroglutamic acid.
Definition: cv.hpp:9070
MS_linear_ion_trap
linear ion trap: A two dimensional Paul ion trap in which ions are confined in the axial dimension by...
Definition: cv.hpp:1282
UNIMOD_BHT
BHT: Michael addition of BHT quinone methide to Cysteine and Lysine.
Definition: cv.hpp:8773
MS_manual_validation
manual validation: Result of quality estimation: decision of a manual validation. ...
Definition: cv.hpp:3682
MS_database_nr
database nr: Non-redundant GenBank sequence database.
Definition: cv.hpp:3559
MS_SEQUEST_modeCV
SEQUEST:modeCV: SEQUEST Mode Input Parameters.
Definition: cv.hpp:3637
MS_MRM_transition_type
MRM transition type (SRM transition type): The type of the transitions, e.g. target or decoy...
Definition: cv.hpp:6295
UNIMOD_His__Pro
His->Pro: His->Pro substitution.
Definition: cv.hpp:9571
MS_TOPP_MapAlignerPoseClustering
TOPP MapAlignerPoseClustering: Corrects retention time distortions between maps using a pose clusteri...
Definition: cv.hpp:6736
MS_signal_to_noise_ratio
signal-to-noise ratio: Unitless number providing the ratio of the total measured intensity of a signa...
Definition: cv.hpp:5908
UNIMOD_Xle__Arg
Xle->Arg: Leu/Ile->Arg substitution.
Definition: cv.hpp:9640
MS_Skyline_mzQuantML_converter
Skyline mzQuantML converter: A software package to convert Skyline report to mzQuantML.
Definition: cv.hpp:7933
MS_MIM_spectrum
MIM spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spectrometer in which the...
Definition: cv.hpp:2230
UO_kilogram_per_square_meter
kilogram per square meter: An area density unit which is equal to the mass of an object in kilograms ...
Definition: cv.hpp:12754
UNIMOD_Arg__Met
Arg->Met: Arg->Met substitution.
Definition: cv.hpp:9739
MS_PIA_protein_inference_scoring
PIA:protein inference scoring: The used scoring method for the protein inference using PIA...
Definition: cv.hpp:7483
MS_pep_FDR_threshold
pep:FDR threshold: False-discovery rate threshold for peptides.
Definition: cv.hpp:4585
MS_SORI
SORI (sustained off-resonance irradiation): A technique associated with Fourier transform ion cyclotr...
Definition: cv.hpp:1240
MS_regular_expression_for_modification_localization_scoring
)
Definition: cv.hpp:7807
UNIMOD_Gln__Val
Gln->Val: Gln->Val substitution.
Definition: cv.hpp:10870
UNIMOD_NO_SMX_SIMD
NO_SMX_SIMD: Nitroso Sulfamethoxazole Sulfinamide thiol adduct.
Definition: cv.hpp:9952
UNIMOD_Dihydroxyimidazolidine
Dihydroxyimidazolidine: Dihydroxy methylglyoxal adduct.
Definition: cv.hpp:10039
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_1_
dHex(1)Hex(3)HexNAc(4)Pent(1): DHex Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:11599
MS_3200_QTRAP
3200 QTRAP: SCIEX or Applied Biosystems|MDS SCIEX QTRAP 3200.
Definition: cv.hpp:2473
UNIMOD_Pentose
Pentose: Pentose.
Definition: cv.hpp:11419
MS_TOPP_PeptideIndexer
TOPP PeptideIndexer: Refreshes the protein references for all peptide hits.
Definition: cv.hpp:6871
MS_ProteomeDiscoverer_Minimal_peptide_probability
ProteomeDiscoverer:Minimal peptide probability: Minimum adjusted peptide probability contributing to ...
Definition: cv.hpp:5434
UNIMOD_dHex_2_Hex_4_HexNAc_2_
dHex(2)Hex(4)HexNAc(2): DHex(2) Hex(4) HexNAc(2).
Definition: cv.hpp:12418
MS_inlet_attribute
inlet attribute: Inlet properties that are associated with a value.
Definition: cv.hpp:6406
UNIMOD_HexNAc_1_dHex_1_
HexNAc(1)dHex(1): HexNAc1dHex1.
Definition: cv.hpp:8701
MS_SMILES_string
SMILES string: The simplified molecular input line entry specification or SMILES is a specification f...
Definition: cv.hpp:3154
MS_penning_ionization
penning ionization: Ionization that occurs through the interaction of two or more neutral gaseous spe...
Definition: cv.hpp:1618
UNIMOD_Difuran
Difuran: Chemical modification of the diiodinated sites of thyroglobulin by Suzuki reaction...
Definition: cv.hpp:11125
MS_SEQUEST_total_ions
SEQUEST:total ions: The SEQUEST result &#39;Total Ions&#39;.
Definition: cv.hpp:3793
MS_TOPP_feature_finder
TOPP feature finder: Feature finder component of the TOPP software.
Definition: cv.hpp:6784
MS_protein_cluster_identification_attribute
protein cluster identification attribute: An attribute of the protein cluster concept as used in mzId...
Definition: cv.hpp:8392
UO_momentum_unit
momentum unit: A unit which is a standard measure of the quantity of motion measured by the product o...
Definition: cv.hpp:12667
MS_enium_ion_OBSOLETE
enium ion: A positively charged lower-valency ion of the nonmetallic elements. The methenium ion is C...
Definition: cv.hpp:1510
MS_ICPL_reagent_0
ICPL reagent 0: The name of the sample labelled with the ICPL reagent 0.
Definition: cv.hpp:8116
MS_Mascot_Parser
Mascot Parser: Mascot Parser was used to analyze the spectra.
Definition: cv.hpp:4681
UNIMOD_Glu__Cys
Glu->Cys: Glu->Cys substitution.
Definition: cv.hpp:10549
UNIMOD_Ala__Trp
Ala->Trp: Ala->Trp substitution.
Definition: cv.hpp:10474
MS_scan_direction
scan direction: Direction in terms of m/z of the scan for scanning analyzers (low to high...
Definition: cv.hpp:154
MS_mass_analyzer_attribute
mass analyzer attribute: Analyzer properties that are associated with a value.
Definition: cv.hpp:1888
UNIMOD_Hex_6_Phos_3_
Hex(6)Phos(3): Hex(6) Phos(3).
Definition: cv.hpp:12100
UNIMOD_DiLeu4plex
DiLeu4plex: Accurate mass for DiLeu 116 isobaric tag.
Definition: cv.hpp:11218
UNIMOD_Tyr__Cys
Tyr->Cys: Tyr->Cys substitution.
Definition: cv.hpp:9859
MS_trap_type_collision_induced_dissociation
trap-type collision-induced dissociation: A collision-induced dissociation process that occurs in a t...
Definition: cv.hpp:7708
MS_database_type_amino_acid
database type amino acid: Database contains amino acid sequences.
Definition: cv.hpp:3541
MS_Bruker_Daltonics_instrument_model
Bruker Daltonics instrument model: Bruker Daltonics&#39; instrument model.
Definition: cv.hpp:544
UNIMOD_Lys__Gly
Lys->Gly: Lys->Gly substitution.
Definition: cv.hpp:10717
MS_peptide_modification_details
peptide modification details: The children of this term can be used to describe modifications.
Definition: cv.hpp:4651
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge1: Standard medium confidence XCorr para...
Definition: cv.hpp:5380
MS_Amanda_AmandaScore
Amanda:AmandaScore: The Amanda score of the scoring function for a PSM.
Definition: cv.hpp:7249
MS_PeptideProphet
PeptideProphet: A program in the TPP that calculates PSM probabilities for MS2 proteomics data search...
Definition: cv.hpp:7153
UNIMOD_DeStreak
DeStreak: Cysteine mercaptoethanol.
Definition: cv.hpp:8959
MS_ProteinScape_second_round_Mascot
ProteinScape:second round Mascot: Flag indicating a second round search with Mascot.
Definition: cv.hpp:6157
MS_lab_personnel
lab personnel: Lab personnel role.
Definition: cv.hpp:4078
UNIMOD_Asp__Ser
Asp->Ser: Asp->Ser substitution.
Definition: cv.hpp:10540
UNIMOD_Bromo
Bromo: Bromination.
Definition: cv.hpp:9031
MS_mass_resolution
mass resolution: Smallest mass difference between two equal magnitude peaks so that the valley betwee...
Definition: cv.hpp:133
UNIMOD_Cy3b_maleimide
Cy3b-maleimide: Fluorescent dye that labels cysteines.
Definition: cv.hpp:10024
MS_AXIMA_QIT
AXIMA-QIT: Shimadzu Biotech AXIMA-QIT MS.
Definition: cv.hpp:2332
MS_LCMS_2010EV
LCMS-2010EV: Shimadzu Scientific Instruments LCMS-2010EV MS.
Definition: cv.hpp:2323
MS_local_FDR
local FDR: Result of quality estimation: the local FDR at the current position of a sorted list...
Definition: cv.hpp:4024
UNIMOD_Tyr__Dha
Tyr->Dha: Dehydroalanine (from Tyrosine).
Definition: cv.hpp:9172
UO_gram_per_milliliter
gram per milliliter: A mass unit density which is equal to mass of an object in grams divided by the ...
Definition: cv.hpp:13009
MS_sequence_sub_set_protein
sequence sub-set protein: A protein with a sub-set of the peptide sequence matches for another protei...
Definition: cv.hpp:5044
UNIMOD_Ala__Asp
Ala->Asp: Ala->Asp substitution.
Definition: cv.hpp:9460
MS_MS_GF
MS-GF: MS-GF software used to re-score the peptide-spectrum matches.
Definition: cv.hpp:6430
MS_top_hat_baseline_reduction
top hat baseline reduction: Top-hat morphological filter based on the basic morphological operations ...
Definition: cv.hpp:6253
CVID_Unknown
Definition: cv.hpp:97
UNIMOD_HMVK
HMVK: Michael addition of hydroxymethylvinyl ketone to cysteine.
Definition: cv.hpp:9100
MS_Compass_Security_Pack
Compass Security Pack: Bruker compass Security Pack software.
Definition: cv.hpp:2665
UO_degree_celsius
degree celsius: A temperature unit which is equal to one Kelvin degree. However, they have their zero...
Definition: cv.hpp:12577
UO_meter_per_second_per_second
meter per second per second: An acceleration unit which is equal to the acceleration an object changi...
Definition: cv.hpp:12727
MS_ProteomeDiscoverer_Mascot_Weight_of_W_Ions
ProteomeDiscoverer:Mascot:Weight of W Ions: Determines if to use W ions for spectrum matching...
Definition: cv.hpp:5500
MS_iTRAQ_reagent_119
iTRAQ reagent 119: The name of the sample labelled with the iTRAQ reagent 119.
Definition: cv.hpp:8182
UO_microcurie
microcurie: An activity (of a radionuclide) unit which is equal to one millionth of a curie or 10^[-6...
Definition: cv.hpp:12931
UNIMOD_Gln__His
Gln->His: Gln->His substitution.
Definition: cv.hpp:9709
MS_percent_collision_energy_ramp_start
percent collision energy ramp start: Collision energy at the start of the collision energy ramp in pe...
Definition: cv.hpp:6943
MS_TOPP_PeakPickerHiRes
TOPP PeakPickerHiRes: Finds mass spectrometric peaks in high-resoluted profile mass spectra...
Definition: cv.hpp:6694
MS_SI_OBSOLETE
SI (suface ionization): The ionization of a neutral species when it interacts with a solid surface wi...
Definition: cv.hpp:1228
MS_XIC_area
XIC area: Area of the extracted ion chromatogram (e.g. of a transition in SRM).
Definition: cv.hpp:5830
UNIMOD_Thr__Val
Thr->Val: Thr->Val substitution.
Definition: cv.hpp:10942
MS_TOPP_OMSSAAdapter
TOPP OMSSAAdapter: Identifies MS2 spectra using the external program OMSSA.
Definition: cv.hpp:6841
MS_maldi_spot_identifier_OBSOLETE
maldi spot identifier: Maldi Spot Identifier.
Definition: cv.hpp:2113
MS_GenoTools
GenoTools: Bruker GenoTools software.
Definition: cv.hpp:2689
UNIMOD_Hex
Hex: Hexose.
Definition: cv.hpp:8515
MS_target_MRM_transition
target MRM transition (target SRM transition): A transition used to target a specific compound that m...
Definition: cv.hpp:6301
MS_role_type
role type: Role of a Person or Organization.
Definition: cv.hpp:4066
UO_molecule_count
molecule count: A dimensionless count unit which denotes the number of molecules. ...
Definition: cv.hpp:13066
MS_TSQ_Vantage
TSQ Vantage: TSQ Vantage.
Definition: cv.hpp:4777
UO_picogram
picogram: A mass unit which is equal to 10^[-12] g.
Definition: cv.hpp:12571
MS_LECO_software
LECO software: LECO software for data acquisition and analysis.
Definition: cv.hpp:5650
MS_direct_liquid_introduction
direct liquid introduction: The delivery of a liquid sample into a mass spectrometer for spray or des...
Definition: cv.hpp:1036
UNIMOD_Label_15N_4_
Label:15N(4): SILAC 15N(4).
Definition: cv.hpp:10132
UNIMOD_Label_13C_6__GG
Label:13C(6)+GG: 13C6 labeled ubiquitinylation residue.
Definition: cv.hpp:10012
UO_volt
volt: An electric potential difference unit which is equal to the work per unit charge. One volt is the potential difference required to move one coulomb of charge between two points in a circuit while using one joule of energy.
Definition: cv.hpp:13144
MS_mzQuantML_format
mzQuantML format: The mzQuantML format for quantification data from the PSI. File extension &#39;...
Definition: cv.hpp:6517
UNIMOD_Hex_5_HexNAc_4_Me_2_Pent_1_
Hex(5)HexNAc(4)Me(2)Pent(1): Hex(5) HexNAc(4) Me(2) Pent.
Definition: cv.hpp:11692
MS_impact
impact: Bruker Daltonics&#39; impact: ESI Q-TOF, Nanospray, APCI, APPI, GC-APCI, CaptiveSpray.
Definition: cv.hpp:6523
MS_object_attribute
object attribute: Object Attribute.
Definition: cv.hpp:2098
UNIMOD_cGMP
cGMP: S-guanylation.
Definition: cv.hpp:10060
MS_PSM_level_local_FDR
PSM-level local FDR: Estimation of the local false discovery rate of peptide spectrum matches...
Definition: cv.hpp:7345
MS_ms_ms_search
ms-ms search: An MS2 search (with fragment ions).
Definition: cv.hpp:3556
MS_charge_state_calculation
charge state calculation: A process that infers the charge state of an MSn spectrum&#39;s precursor(s) by...
Definition: cv.hpp:2854
MS_peptide_end_on_chromosome
peptide end on chromosome: The overall end position on the chromosome to which a peptide has been map...
Definition: cv.hpp:8218
UO_electric_potential_difference_unit
electric potential difference unit: A unit which is a standard measure of the work done per unit char...
Definition: cv.hpp:13141
MS_Progenesis_peptide_normalised_abundance
Progenesis:peptide normalised abundance: The data type normalised abundance for peptides produced by ...
Definition: cv.hpp:5929
MS_MALDI_Synapt_HDMS
MALDI Synapt HDMS: Waters oa-ToF based MALDI Synapt HDMS.
Definition: cv.hpp:5581
MS_AA_sequence
AA sequence: The sequence is a amino acid sequence.
Definition: cv.hpp:4282
MS_MaxQuant_P_site_localization_probability
MaxQuant:P-site localization probability: The P-site localization probability value from MaxQuant sof...
Definition: cv.hpp:6217
MS_second_column_elution_time
second column elution time: The time of elution from the second chromatographic column in the chromat...
Definition: cv.hpp:6541
UNIMOD_dHex_1_Hex_5_HexNAc_4_Sulf_2_
dHex(1)Hex(5)HexNAc(4)Sulf(2): DHex Hex(5) HexNAc(4) Sulf(2).
Definition: cv.hpp:11773
MS_anchor_protein
anchor protein: A representative protein selected from a set of sequence same-set or spectrum same-se...
Definition: cv.hpp:5029
MS_Mascot_expectation_value
Mascot:expectation value: The Mascot result &#39;expectation value&#39;.
Definition: cv.hpp:3823
UO_femtomole
femtomole: A substance unit equal to 10^[-15] mol.
Definition: cv.hpp:12625
UNIMOD_dHex_4_Hex_1_HexNAc_3_Kdn_1_
dHex(4)Hex(1)HexNAc(3)Kdn(1): DHex(4) Hex HexNAc(3) Kdn.
Definition: cv.hpp:12304
MS_Mascot_ShowHomologousProteinsWithSamePeptides
Mascot:ShowHomologousProteinsWithSamePeptides: If true, show (sequence or spectrum) same-set proteins...
Definition: cv.hpp:4213
MS_autoflex_TOF_TOF
autoflex TOF/TOF: Bruker Daltonics&#39; autoflex TOF/TOF MS: MALDI TOF.
Definition: cv.hpp:655
MS_Q_Tof_ultima
Q-Tof ultima: Waters oa-ToF based Q-Tof Ultima.
Definition: cv.hpp:775
MS_pwiz
pwiz (ProteoWizard software): ProteoWizard software for data processing and analysis. Primarily developed by the labs of P. Malick and D. Tabb.
Definition: cv.hpp:2356
UNIMOD_Pro__Val
Pro->Val: Pro->Val substitution.
Definition: cv.hpp:10834
UNIMOD_Sulfide
Sulfide: Persulfide.
Definition: cv.hpp:9226
MS_distinct_peptide_level_q_value
distinct peptide-level q-value: Estimation of the q-value for distinct peptides once redundant identi...
Definition: cv.hpp:5860
MS_ProteinExtractor_PhenyxWeighting
ProteinExtractor:PhenyxWeighting: Influence of Phenyx search engine in the process of merging the sea...
Definition: cv.hpp:4579
MS_OpenXQuest_match_odds
OpenXQuest:match-odds: OpenXQuest&#39;s match-odds subscore.
Definition: cv.hpp:8353
MS_PIA_Combined_FDRScore_calculated
PIA:Combined FDRScore calculated: Indicates whether the combined FDR score was calculated for the PIA...
Definition: cv.hpp:7465
MS_scanning_method_OBSOLETE
scanning method: Describes the acquisition data type produced by a tandem mass spectrometry experimen...
Definition: cv.hpp:160
UNIMOD_dHex_1_Hex_2_HexNAc_1_Sulf_1_
dHex(1)Hex(2)HexNAc(1)Sulf(1): DHex Hex(2) HexNAc Sulf.
Definition: cv.hpp:11872
MS_max_fold_change
max fold change: Global datatype: Maximum of all pair-wise fold changes of group means (e...
Definition: cv.hpp:5815
UNIMOD_O_Et_N_diMePhospho
O-Et-N-diMePhospho: O-ethyl, N-dimethyl phosphate.
Definition: cv.hpp:11278
UNIMOD_G_H1
G-H1: Glyoxal-derived hydroimiadazolone.
Definition: cv.hpp:10072
MS_Paragon_expression_change_p_value
Paragon:expression change p-value: The Paragon result &#39;Expression change P-value&#39;.
Definition: cv.hpp:3814
MS_ProteomeDiscoverer_SEQUEST_Weight_of_z_Ions
ProteomeDiscoverer:SEQUEST:Weight of z Ions: Uses z ions for spectrum matching with this relative fac...
Definition: cv.hpp:5344
UO_speed_velocity_unit
speed/velocity unit: A unit which is a standard measure of the rate of movement. Speed is measured in...
Definition: cv.hpp:12676
MS_Xevo_G2_S_Tof
Xevo G2-S Tof: Waters oa-ToF based Xevo G2-S Tof.
Definition: cv.hpp:7114
MS_scan_polarity
scan polarity: An acquisition mode to which specifies weather polarity is negative, positive or alternating.
Definition: cv.hpp:1840
MS_Paragon__bias_correction
Paragon: bias correction: The Paragon method setting that controls whether &#39;Bias Correction&#39; is invok...
Definition: cv.hpp:7582
MS_ProteomeDiscoverer_Spectrum_Selector_Unrecognized_MS_Order_Replacements
ProteomeDiscoverer:Spectrum Selector:Unrecognized MS Order Replacements: Specifies the MS scan order ...
Definition: cv.hpp:5113
MS_product_ion_m_z_error
product ion m/z error: The product ion m/z error.
Definition: cv.hpp:3961
UNIMOD_Gly__Lys
Gly->Lys: Gly->Lys substitution.
Definition: cv.hpp:10633
MS_MS2_tag_based_peptide_level_quantitation
MS2 tag-based peptide level quantitation: MS2 tag-based peptide level quantitation.
Definition: cv.hpp:6361
UNIMOD_a_type_ion
a-type-ion: ISD a-series (C-Term).
Definition: cv.hpp:8695
MS_ProteinScape_SearchEvent
ProteinScape SearchEvent: Source data for this mzIdentML was a ProteinScape SearchEvent.
Definition: cv.hpp:4093
MS_TSQ_Quantum_Ultra
TSQ Quantum Ultra: Thermo Scientific TSQ Quantum Ultra.
Definition: cv.hpp:2770
MS_clustal_aln
clustal aln: ClustalW ALN (multiple alignment) format.
Definition: cv.hpp:4303
MS_ProteomeDiscoverer_ZCore_Protein_Score_Cutoff
ProteomeDiscoverer:ZCore:Protein Score Cutoff: Sets a minimum protein score that each protein must ex...
Definition: cv.hpp:5347
MS_API_3000
API 3000: Applied Biosystems/MDS SCIEX API 3000 MS.
Definition: cv.hpp:646
MS_SCIEX_TOF_TOF_database
SCIEX TOF/TOF database: Applied Biosystems/MDS Analytical Technologies TOF/TOF instrument database...
Definition: cv.hpp:4690
UNIMOD_SulfoGMBS
SulfoGMBS: High molecular absorption label for proteins.
Definition: cv.hpp:10222
MS_QTRAP_6500_
QTRAP 6500+: SCIEX QTRAP 6500+.
Definition: cv.hpp:8041
MS_data_processing
data processing (data transformation): Terms used to describe types of data processing.
Definition: cv.hpp:1795
UNIMOD_Hex_1_HexNAc_3_Sulf_1_
Hex(1)HexNAc(3)Sulf(1): Hex HexNAc(3) Sulf.
Definition: cv.hpp:11929
MS_ion_reaction_OBSOLETE
ion reaction: Chemical transformation involving an ion.
Definition: cv.hpp:1741
MS_Pepitome_MVH
Pepitome:MVH (MyriMatch:MVH): Using the multivariate hypergeometric distribution and a peak list divi...
Definition: cv.hpp:5014
MS_MALDI
MALDI (matrix-assisted laser desorption ionization): The formation of gas-phase ions from molecules t...
Definition: cv.hpp:361
MS_x_Tracker
x-Tracker: X-Tracker generic tool for quantitative proteomics.
Definition: cv.hpp:6658
MS_peptide_descriptions
peptide descriptions: Descriptions of peptides.
Definition: cv.hpp:4315
UNIMOD_Hex_5_HexNAc_4_NeuAc_1_Sulf_1_
Hex(5)HexNAc(4)NeuAc(1)Sulf(1): Hex(5) HexNAc(4) NeuAc Sulf.
Definition: cv.hpp:11824
MS_ion_injection_time
ion injection time: The length of time spent filling an ion trapping device.
Definition: cv.hpp:3337
UNIMOD_Xle__Trp
Xle->Trp: Leu/Ile->Trp substitution.
Definition: cv.hpp:9622
MS_______E_E_
(?<=[^E]E): Regular expression for glutamyl endopeptidase.
Definition: cv.hpp:6142
MS_chromatography_OBSOLETE
chromatography: Chromatographic conditions used to obtain the sample.
Definition: cv.hpp:277
UNIMOD_3sulfo
3sulfo: Derivatization by N-term modification using 3-Sulfobenzoic succinimidyl ester.
Definition: cv.hpp:9958
UNIMOD_PyridoxalPhosphate
PyridoxalPhosphate: Pyridoxal phosphate.
Definition: cv.hpp:8530
MS_____K_
(?<=K): Regular expression for Lys-C/P.
Definition: cv.hpp:4258
MS_confident_peptide_sequence_number
confident peptide sequence number: This counts the number of peptide sequences without regard to whet...
Definition: cv.hpp:3607
MS_Compass_OpenAccess
Compass OpenAccess: Bruker compass OpenAccess software.
Definition: cv.hpp:2662
MS_param__y_ion_NH3_DEPRECATED
param: y ion-NH3 DEPRECATED: Ion y-NH3 parameter information, type of product: y ion with lost ammoni...
Definition: cv.hpp:3760
MS_ProteomeDiscoverer_Mascot_Max_MGF_File_Size
ProteomeDiscoverer:Mascot:Max MGF File Size: Maximum size of the .mgf (Mascot Generic Format) file in...
Definition: cv.hpp:5200
MS_chromatogram_type
chromatogram type: Broad category or type of a chromatogram.
Definition: cv.hpp:2395
MS_low_energy_collisions_OBSOLETE
low energy collisions: A collision between an ion and neutral species with translational energy appro...
Definition: cv.hpp:1720
MS_ProteomeDiscoverer_Peptide_CTerminus
ProteomeDiscoverer:Peptide CTerminus: Static modification for the C terminal of the peptide used duri...
Definition: cv.hpp:5290
MS_confidence_score
confidence score: Result of quality estimation: confidence score.
Definition: cv.hpp:3862
MS_unit_OBSOLETE
unit: Terms to describe units.
Definition: cv.hpp:1822
UNIMOD_dHex_2_Hex_2_HexNAc_3_
dHex(2)Hex(2)HexNAc(3): DHex(2) Hex(2) HexNAc(3).
Definition: cv.hpp:12409
UNIMOD_Label_2H_3__Oxidation
Label:2H(3)+Oxidation: Oxidised 2H(3) labelled Methionine.
Definition: cv.hpp:11290
UNIMOD_Delta_H_2_C_2_
Delta:H(2)C(2): Acetaldehyde +26.
Definition: cv.hpp:8851
UNIMOD_Met__Trp
Met->Trp: Met->Trp substitution.
Definition: cv.hpp:10771
MS_external_reference_identifier
external reference identifier: An identifier/accession number to an external reference database...
Definition: cv.hpp:3184
MS_multiple_ion_monitoring_spectrum
multiple ion monitoring spectrum (SIM spectrum): Spectrum obtained with the operation of a mass spect...
Definition: cv.hpp:2233
UNIMOD_Glu__Ala
Glu->Ala: Glu->Ala substitution.
Definition: cv.hpp:9514
UNIMOD_SUMO2135
SUMO2135: SUMOylation by SUMO-1 after tryptic cleavage.
Definition: cv.hpp:10273
MS_instrument_attribute
instrument attribute: Instrument properties that are associated with a value.
Definition: cv.hpp:1939
MS_peptide_exon_nucleotide_sizes
peptide exon nucleotide sizes: A comma separated list of the number of DNA bases within each exon to ...
Definition: cv.hpp:8224
UNIMOD_Arg__Gln
Arg->Gln: Arg->Gln substitution.
Definition: cv.hpp:9736
MS_gas_laser
gas laser: Laser which is powered by a gaseous medium.
Definition: cv.hpp:3094
MS_sum_of_MatchedFeature_values_OBSOLETE
sum of MatchedFeature values: Peptide quantification value calculated as sum of MatchedFeature quanti...
Definition: cv.hpp:5803
MS_staphylococcal_protease
staphylococcal protease (glutamyl endopeptidase): Enzyme glutamyl endopeptidase (EC 3...
Definition: cv.hpp:6010
MS_spectral_counting_quantitation_analysis
spectral counting quantitation analysis: Spectral counting workflow (number of identified MS2 spectra...
Definition: cv.hpp:5764
MS_matrix_solution_concentration
matrix solution concentration: Concentration of the chemical solution used as matrix.
Definition: cv.hpp:3049
MS_absolute_quantitation_analysis
absolute quantitation analysis: Absolute quantitation analysis.
Definition: cv.hpp:7834
UNIMOD_2HPG
2HPG: Bis(hydroxphenylglyoxal) arginine.
Definition: cv.hpp:8788
MS_flow_injection_analysis
flow injection analysis: Sample is directly injected or infused into the ionization source...
Definition: cv.hpp:292
MS_TOPP_DTAExtractor
TOPP DTAExtractor: Extracts spectra of an MS run file to several files in DTA format.
Definition: cv.hpp:6751
MS_direct_insertion_probe
direct insertion probe: A device for introducing a solid or liquid sample into a mass spectrometer io...
Definition: cv.hpp:1030
UNIMOD_dHex_1_Hex_3_HexNAc_5_Sulf_1_
dHex(1)Hex(3)HexNAc(5)Sulf(1): DHex Hex(3) HexNAc(5) Sulf.
Definition: cv.hpp:11668
MS_PAnalyzer_indistinguishable_protein
PAnalyzer:indistinguishable protein: A member of a group of proteins sharing all peptides that are ex...
Definition: cv.hpp:6931
MS_MAT253
MAT253: ThermoFinnigan MAT253 MS.
Definition: cv.hpp:724
MS_SIFT
SIFT (selected ion flow tube): A device in which m/z selected ions are entrained in an inert carrier ...
Definition: cv.hpp:1234
UNIMOD_Hydroxyfarnesyl
Hydroxyfarnesyl: Hydroxyfarnesyl.
Definition: cv.hpp:9112
MS_nanoACQUITY_UPLC_with_HDX_Technology
nanoACQUITY UPLC with HDX Technology: Waters LC-system nanoACQUITY UPLC with HDX Technology.
Definition: cv.hpp:5560
MS_frag__internal_ya_ion
frag: internal ya ion: Fragmentation information, type of product: internal ya ion.
Definition: cv.hpp:4348
MS_Xevo_Q_Tof
Xevo Q-Tof: Waters oa-ToF based Xevo Q-Tof.
Definition: cv.hpp:5611
UNIMOD_Val__Gly
Val->Gly: Val->Gly substitution.
Definition: cv.hpp:9826
MS_TOPP_MzTabExporter
TOPP MzTabExporter: Exports various XML formats to an mzTab file.
Definition: cv.hpp:6763
UNIMOD_Glucosylgalactosyl
Glucosylgalactosyl: Glucosylgalactosyl hydroxylysine.
Definition: cv.hpp:9154
UNIMOD_CarboxymethylDMAP
CarboxymethylDMAP: A fixed +1 charge tag attached to the N-terminus of peptides.
Definition: cv.hpp:11263
UNIMOD_dHex_2_Hex_2_HexNAc_2_Sulf_1_
dHex(2)Hex(2)HexNAc(2)Sulf(1): DHex(2) Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:12052
MS_number_of_peaks_used
number of peaks used: The number of peaks from the original peak list that are used to calculate the ...
Definition: cv.hpp:3676
MS_SEQUEST_sp
SEQUEST:sp: The SEQUEST result &#39;Sp&#39; (protein).
Definition: cv.hpp:3778
UNIMOD_Phospho
Phospho: Phosphorylation.
Definition: cv.hpp:8467
MS_HCTultra_PTM
HCTultra PTM: Bruker Daltonics&#39; HCTultra PTM: ESI TOF, Nanospray, APCI, APPI, PTR.
Definition: cv.hpp:2614
MS_TOPP_IDRTCalibration
TOPP IDRTCalibration: Calibrate Retention times of peptide hits to standards.
Definition: cv.hpp:6868
MS_surface_ionization
surface ionization: The ionization of a neutral species when it interacts with a solid surface with a...
Definition: cv.hpp:1639
MS_TMT_reagent
TMT reagent: Tandem mass tag reagent.
Definition: cv.hpp:8140
UNIMOD_Met__Phe
Met->Phe: Met->Phe substitution.
Definition: cv.hpp:10750
MS_peptide_sequence_level_p_value
peptide sequence-level p-value: Estimation of the p-value for distinct peptides once redundant identi...
Definition: cv.hpp:5866
UO_volumetric_flow_rate_unit
volumetric flow rate unit: A unit which is a standard measure of the volume of fluid which passes thr...
Definition: cv.hpp:13300
MS_mz5_format
mz5 format: mz5 file format, modelled after mzML.
Definition: cv.hpp:5899
MS_6120_Quadrupole_LC_MS
6120 Quadrupole LC/MS: The 6120 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1852
MS_source_sprayer_model
source sprayer model: The source sprayer model.
Definition: cv.hpp:6070
MS_ProteinExtractor_input_parameter
ProteinExtractor input parameter: Search engine input parameters specific to ProteinExtractor.
Definition: cv.hpp:6586
MS_SQID_score
SQID:score: The SQID result &#39;Score&#39;.
Definition: cv.hpp:5917
MS_desorption_ionization
desorption ionization: The formation of ions from a solid or liquid material after the rapid vaporiza...
Definition: cv.hpp:1024
UNIMOD_Thyroxine
Thyroxine: Tetraiodo.
Definition: cv.hpp:9169
MS_charge_inversion_mass_spectrum
charge inversion mass spectrum: The measurement of the relative abundance of ions that result from a ...
Definition: cv.hpp:1375
UO_ug_disk
ug/disk: A unit which is equal to one microgram per disk, where a disk is some physical surface/conta...
Definition: cv.hpp:13321
MS_ChromaTOF_HRT_software
ChromaTOF HRT software: Software for acquisition, processing and analysis of data for LECO instrument...
Definition: cv.hpp:5887
MS_p_value__protein_diff_from_1_randomly__OBSOLETE
p-value (protein diff from 1 randomly): P-value (protein diff from 1 randomly).
Definition: cv.hpp:3715
MS_Shimadzu_Biotech_nativeID_format
Shimadzu Biotech nativeID format: Native format defined by source=xsd:string start=xsd:nonNegativeInt...
Definition: cv.hpp:3343
MS_SEQUEST_Full
SEQUEST:Full:
Definition: cv.hpp:3640
MS_Progenesis_protein_normalised_abundance
Progenesis:protein normalised abundance: The data type normalised abundance for proteins produced by ...
Definition: cv.hpp:5926
UNIMOD_dHex_1_Hex_2_HexNAc_2_Sulf_1_
dHex(1)Hex(2)HexNAc(2)Sulf(1): DHex Hex(2) HexNAc(2) Sulf.
Definition: cv.hpp:11968
UO_picometer
picometer: A length unit which is equal to 10^[-12] m.
Definition: cv.hpp:12556
UNIMOD_Hex_2_HexNAc_5_
Hex(2)HexNAc(5): Hex(2) HexNAc(5).
Definition: cv.hpp:12175
UNIMOD_dHex_2_Hex_2_HexNAc_3_Sulf_1_
dHex(2)Hex(2)HexNAc(3)Sulf(1): DHex(2) Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:12157
MS_TOPP_PrecursorIonSelector
TOPP PrecursorIonSelector: A tool for precursor ion selection based on identification results...
Definition: cv.hpp:6874
MS_Expect_value
Expect value: Result of quality estimation: Expect value.
Definition: cv.hpp:3859
MS_multiple_peak_list_nativeID_format__combined_spectra
multiple peak list nativeID format, combined spectra: Comma separated list of spectra that have been ...
Definition: cv.hpp:8260
MS_TEMPUS_TOF
TEMPUS TOF: ThermoFinnigan TEMPUS TOF MS.
Definition: cv.hpp:796
UNIMOD_Ser__Lys
Ser->Lys: Ser->Lys substitution.
Definition: cv.hpp:10909
MS_Bruker_Agilent_YEP_nativeID_format__combined_spectra
Bruker/Agilent YEP nativeID format, combined spectra: Bruker/Agilent comma separated list of spectra ...
Definition: cv.hpp:8251
MS_Pegasus_HRT
Pegasus HRT: LECO high resolution time-of-flight GC mass spectrometer.
Definition: cv.hpp:5659
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Selection
ProteomeDiscoverer:Spectrum Selector:Precursor Selection: Determines which precursor mass to use for ...
Definition: cv.hpp:5092
UO_mass_percentage
mass percentage: A dimensionless concentration unit which denotes the mass of a substance in a mixtur...
Definition: cv.hpp:12979
UNIMOD_Label_13C_9_
Label:13C(9): 13C(9) Silac label.
Definition: cv.hpp:8779
MS_ProteoGrouper_PAG_score
ProteoGrouper:PAG score: A score assigned to a protein group (modelled as ProteinAmbiguityGroup in mz...
Definition: cv.hpp:6997
MS_Paragon_special_factor
Paragon:special factor: The Paragon method setting indicating a list of one or more &#39;special factors&#39;...
Definition: cv.hpp:7633
MS_report_only_spectra_assigned_to_identified_proteins
report only spectra assigned to identified proteins: Flag indicating to report only the spectra assig...
Definition: cv.hpp:4963
MS_micrOTOFcontrol
micrOTOFcontrol: Bruker software for data acquisition.
Definition: cv.hpp:2695
MS_ProteomeDiscoverer_SEQUEST_Std_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:Std Medium Confidence XCorr Charge2: Standard medium confidence XCorr para...
Definition: cv.hpp:5383
UNIMOD_Phe__Xle
Phe->Xle: Phe->Leu/Ile substitution.
Definition: cv.hpp:9538
UO_substance_unit
substance unit: A unit which is a standardised quantity of an element or compound with uniform compos...
Definition: cv.hpp:12514
UNIMOD_FMN
FMN: O3-(riboflavin phosphoryl).
Definition: cv.hpp:9280
PWIZ_API_DECL bool operator==(const TruncatedLorentzianParameters &t, const TruncatedLorentzianParameters &u)
UNIMOD_dHex_1_Hex_2_HexNAc_4_
dHex(1)Hex(2)HexNAc(4): DHex Hex(2) HexNAc(4).
Definition: cv.hpp:12136
UNIMOD_Dethiomethyl
Dethiomethyl: Prompt loss of side chain from oxidised Met.
Definition: cv.hpp:9415
MS_micrOTOF_Q_II
micrOTOF-Q II: Bruker Daltonics&#39; micrOTOF-Q II: ESI Q-TOF, Nanospray, APCI, APPI. ...
Definition: cv.hpp:2629
MS_QIT
QIT (quadrupole ion trap): Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional...
Definition: cv.hpp:391
MS_ACQUITY_UPLC_H_Class
ACQUITY UPLC H-Class: Waters LC-system ACQUITY UPLC H-Class.
Definition: cv.hpp:5542
MS_PEFF_format
PEFF format: The sequence database was stored in the PEFF (PSI enhanced FastA file) format...
Definition: cv.hpp:4627
MS_PIA_protein_inference_used_PSMs
PIA:protein inference used PSMs: The method to determine the PSMs used for scoring by the protein inf...
Definition: cv.hpp:7489
MS_ion_trap
ion trap: A device for spatially confining ions using electric and magnetic fields alone or in combin...
Definition: cv.hpp:1126
MS_Formic_acid
Formic_acid: Formic acid.
Definition: cv.hpp:4177
MS_autoflex_II
autoflex II: Bruker Daltonics&#39; autoflex II: MALDI TOF.
Definition: cv.hpp:652
MS_6410_Triple_Quadrupole_LC_MS
6410 Triple Quadrupole LC/MS: The 6410 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:1876
UNIMOD_dHex_1_Hex_2_HexNAc_3_NeuAc_1_
dHex(1)Hex(2)HexNAc(3)NeuAc(1): DHex Hex(2) HexNAc(3) NeuAc.
Definition: cv.hpp:12184
MS_full_scan_OBSOLETE
full scan: Feature of the ion trap mass spectrometer where MS data is acquired over a mass range...
Definition: cv.hpp:1948
UO_meter
meter: A length unit which is equal to the length of the path traveled by light in vacuum during a ti...
Definition: cv.hpp:12520
UO_watt_hour
watt-hour: An energy unit which is equal to the amount of electrical energy equivalent to a one-watt ...
Definition: cv.hpp:13159
MS_product_ion_m_z
product ion m/z: The m/z of the product ion.
Definition: cv.hpp:3949
UNIMOD_Hex_1_HexNAc_2_NeuGc_1_
Hex(1)HexNAc(2)NeuGc(1): Hex HexNAc(2) NeuGc.
Definition: cv.hpp:11938
MS_SSQ_7000
SSQ 7000: ThermoFinnigan SSQ 7000 MS.
Definition: cv.hpp:2761
UNIMOD_Fluorescein_tyramine
Fluorescein-tyramine: Fluorescein-tyramine adduct by peroxidase activity.
Definition: cv.hpp:12481
UNIMOD_3_deoxyglucosone
3-deoxyglucosone: Condensation product of 3-deoxyglucosone.
Definition: cv.hpp:10240
MS_modification_parameters
modification parameters: Modification parameters for the search engine run.
Definition: cv.hpp:3496
MS_MaxQuant_PTM_Score
MaxQuant:PTM Score: The PTM score from MaxQuant software.
Definition: cv.hpp:6208
MS_software_specific_input_parameter
software specific input parameter: Software specific input parameter.
Definition: cv.hpp:6604
MS_4800_Plus_MALDI_TOF_TOF
4800 Plus MALDI TOF/TOF: SCIEX or Applied Biosystems|MDS SCIEX 4800 Plus MALDI TOF-TOF Analyzer...
Definition: cv.hpp:2476
MS_method_file_format
method file format: Attribute describing a method file format.
Definition: cv.hpp:6673
MS_spectrum_title_OBSOLETE
spectrum title: OBSOLETE: replaced by MS:1000796 (spectrum title): Holds the spectrum title from diff...
Definition: cv.hpp:4489
MS_protein_ratio
protein ratio: Protein ratio.
Definition: cv.hpp:3709
UNIMOD_Label_13C_4__Oxidation
Label:13C(4)+Oxidation: Oxidised 13C4 labelled Methionine.
Definition: cv.hpp:11107
MS_internal_peptide_reference_used
internal peptide reference used: States whether an internal peptide reference is used or not in absol...
Definition: cv.hpp:7837
MS_Pegasus
Pegasus: LECO GC time-of-flight mass spectrometer.
Definition: cv.hpp:5665
UNIMOD_Trp__Hydroxykynurenin
Trp->Hydroxykynurenin: Tryptophan oxidation to hydroxykynurenin.
Definition: cv.hpp:9052
MS_Thermo_nativeID_format
Thermo nativeID format: Native format defined by controllerType=xsd:nonNegativeInteger controllerNumb...
Definition: cv.hpp:2824
MS_decoy_MRM_transition
decoy MRM transition (decoy SRM transition): A transition not expected to be present in the sample an...
Definition: cv.hpp:6307
UNIMOD_Gln__Cys
Gln->Cys: Gln->Cys substitution.
Definition: cv.hpp:10846
UNIMOD_Tyr__Ala
Tyr->Ala: Tyr->Ala substitution.
Definition: cv.hpp:11023
MS_ProteomeDiscoverer_Mascot_Error_tolerant_Search
ProteomeDiscoverer:Mascot:Error tolerant Search: Determines whether to search error-tolerant.
Definition: cv.hpp:5197
UNIMOD_Val__Xle
Val->Xle: Val->Leu/Ile substitution.
Definition: cv.hpp:9823
MS_pulse_duration
pulse duration: Describes how long the laser beam was emitted from the laser device.
Definition: cv.hpp:3085
UNIMOD_dHex_1_Hex_2_HexNAc_3_Sulf_1_
dHex(1)Hex(2)HexNAc(3)Sulf(1): DHex Hex(2) HexNAc(3) Sulf.
Definition: cv.hpp:12076
UNIMOD_dHex_1_Hex_3_HexNAc_2_NeuGc_1_
dHex(1)Hex(3)HexNAc(2)NeuGc(1): DHex Hex(3) HexNAc(2) NeuGc.
Definition: cv.hpp:12178
MS_charge_stripping
charge stripping: The reaction of a positive ion with an atom or molecule that results in the removal...
Definition: cv.hpp:1012
UNIMOD_BHTOH
BHTOH: Michael addition of t-butyl hydroxylated BHT (BHTOH) to C, H or K.
Definition: cv.hpp:9358
MS_adduct_ion_OBSOLETE
adduct ion: Ion formed by the interaction of an ion with one or more atoms or molecules to form an io...
Definition: cv.hpp:1480
UO_picomole
picomole: A substance unit equal to 10^[-12] mol.
Definition: cv.hpp:12622
MS_M_LDI_LR
M LR: Waters oa-ToF based MALDI LR.
Definition: cv.hpp:721
UNIMOD_ISD_z_2_ion
ISD_z+2_ion: ISD (z+2)-series.
Definition: cv.hpp:10321
UO_frequency_unit
frequency unit: A unit which is a standard measure of the number of repetitive actions in a particula...
Definition: cv.hpp:12811
UNIMOD_Hex_2_
Hex(2): Lactosylation.
Definition: cv.hpp:9385
MS_PeptideShaker_PSM_score
PeptideShaker PSM score: The probability based PeptideShaker PSM score.
Definition: cv.hpp:7690
MS_MS_GF_RawScore
MS-GF:RawScore: MS-GF raw score.
Definition: cv.hpp:6439
MS_reporter_ion_raw_value
reporter ion raw value: Intensity (or area) of MS2 reporter ion (e.g. iTraq).
Definition: cv.hpp:5824
UO_unit_per_milliliter
unit per milliliter: A unit per milliliter unit which is equal to one unit of an agreed arbitrary amo...
Definition: cv.hpp:13024
MS_Proteinscape_spectra
Proteinscape spectra: Spectra from Bruker/Protagen Proteinscape database.
Definition: cv.hpp:4828
MS_sample_plate
sample plate: Plate where the sample solution is spotted in a MALDI or similar instrument.
Definition: cv.hpp:6073
MS_tab_delimited_text_format
tab delimited text format: A file format that has two or more columns of tabular data where each colu...
Definition: cv.hpp:3298
MS_Progenesis_feature_intensity
Progenesis:feature intensity: The data type feature intensity produced by Progenesis LC-MS...
Definition: cv.hpp:5944
MS_TOFCalibration
TOFCalibration: Applies time of flight calibration.
Definition: cv.hpp:2815
UNIMOD_Hex_5_HexNAc_1_
Hex(5)HexNAc(1): Hex(5) HexNAc.
Definition: cv.hpp:12004
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuGc_1_
dHex(2)Hex(1)HexNAc(2)NeuGc(1): DHex(2) Hex HexNAc(2) NeuGc.
Definition: cv.hpp:12082
MS_electron_energy_obsolete_OBSOLETE
electron energy obsolete: The potential difference through which electrons are accelerated before the...
Definition: cv.hpp:874
UNIMOD_Cys__Asp
Cys->Asp: Cys->Asp substitution.
Definition: cv.hpp:10483
UNIMOD_His__Arg
His->Arg: His->Arg substitution.
Definition: cv.hpp:9580
MS_single_peak_list_nativeID_format
single peak list nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:2845
UNIMOD_Cys__Val
Cys->Val: Cys->Val substitution.
Definition: cv.hpp:10513
UNIMOD_Hex_1_HexNAc_2_Sulf_1_
Hex(1)HexNAc(2)Sulf(1): Hex HexNAc(2) Sulf.
Definition: cv.hpp:11485
MS_IDMS_OBSOLETE
IDMS (isotope dilution mass spectrometry): A quantitative mass spectrometry technique in which an iso...
Definition: cv.hpp:901
UO_electric_field_strength_unit
electric field strength unit: The electric field strength is a unit which is a measure of the potenti...
Definition: cv.hpp:13291
UNIMOD_dHex_1_Hex_2_
dHex(1)Hex(2): Hex2dHex1.
Definition: cv.hpp:11299
UNIMOD_dHex_2_Hex_1_HexNAc_2_NeuAc_1_
dHex(2)Hex(1)HexNAc(2)NeuAc(1): DHex(2) Hex HexNAc(2) NeuAc.
Definition: cv.hpp:12073
MS_NCBI___p_
NCBI *.p*: The sequence database was stored in the NCBI formatdb (*.p*) format.
Definition: cv.hpp:4300
UNIMOD_His__Tyr
His->Tyr: His->Tyr substitution.
Definition: cv.hpp:9574
MS_translation_start_codons
translation start codons: The translation start codons used to translate the nucleotides to amino aci...
Definition: cv.hpp:4471
UNIMOD_Label_2H_6_15N_1_
Label:2H(6)15N(1): Label:2H(6)15N(1).
Definition: cv.hpp:11377
MS_MS_Numpress_linear_prediction_compression
MS-Numpress linear prediction compression: Compression using MS-Numpress linear prediction compressio...
Definition: cv.hpp:7228
MS_QTRAP_6500
QTRAP 6500: SCIEX QTRAP 6500.
Definition: cv.hpp:8038
MS_quadrupole_ion_trap
quadrupole ion trap: Quadrupole Ion Trap mass analyzer captures the ions in a three dimensional ion t...
Definition: cv.hpp:385
MS_ion_desolvation_OBSOLETE
ion desolvation: The removal of solvent molecules clustered around a gas-phase ion by means of heatin...
Definition: cv.hpp:1591
MS_ultraflex_III_TOF_TOF
ultraflex III TOF/TOF: Bruker Daltonics&#39; ultraflex III TOF/TOF: MALDI TOF.
Definition: cv.hpp:2632
MS_BioTools
BioTools: Bruker software for data analysis.
Definition: cv.hpp:2638
UNIMOD_dHex_1_Hex_1_HexNAc_2_Sulf_1_
dHex(1)Hex(1)HexNAc(2)Sulf(1): DHex Hex HexNAc(2) Sulf.
Definition: cv.hpp:11896
MS_MSFit_Mowse_score
MSFit:Mowse score: The MSFit Mowse score.
Definition: cv.hpp:4750
MS_SCiLS_Lab
SCiLS Lab: SCiLS Lab software.
Definition: cv.hpp:7444
UNIMOD_Hex_1_HexNAc_1_NeuAc_2_Ac_2_
Hex(1)HexNAc(1)NeuAc(2)Ac(2): Ac(2) Hex HexNAc NeuAc(2).
Definition: cv.hpp:12013
UNIMOD_Asp__Thr
Asp->Thr: Asp->Thr substitution.
Definition: cv.hpp:10543
MS_PSM_level_combined_FDRScore
PSM-level combined FDRScore: mzidLibrary Combined FDRScore for peptide spectrum matches specifically ...
Definition: cv.hpp:7360
MS_BaselineFilter
BaselineFilter: Removes the baseline from profile spectra using a top-hat filter. ...
Definition: cv.hpp:2776
MS_multiphoton_ionization
multiphoton ionization: Photoionization of an atom or molecule in which in two or more photons are ab...
Definition: cv.hpp:925
MS_progeny_ion_OBSOLETE
progeny ion: A charged product of a series of consecutive reactions that includes product ions...
Definition: cv.hpp:1450
MS_NA_sequence
NA sequence: The sequence is a nucleic acid sequence.
Definition: cv.hpp:4279
MS_isolation_width_OBSOLETE
isolation width: The total width (i.e. not half for plus-or-minus) of the gate applied around a selec...
Definition: cv.hpp:169
MS_conversion_software
conversion software: Computer software primarily designed to convert data represented in one format t...
Definition: cv.hpp:7291
UNIMOD_dHex_2_Hex_3_HexNAc_4_Pent_1_
dHex(2)Hex(3)HexNAc(4)Pent(1): DHex(2) Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:11665
MS_lower_score_better
lower score better: Indicates that a lower score is better.
Definition: cv.hpp:6616
MS_ProteomeDiscoverer_Mascot_Please_Do_not_Touch_this
ProteomeDiscoverer:Mascot:Please Do not Touch this: Unknown Mascot parameter which ProteomeDiscoverer...
Definition: cv.hpp:5518
MS_microTOF_LC
microTOF LC: Bruker Daltonics&#39; microTOF LC: ESI TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:742
MS_API_100LC
API 100LC: Applied Biosystems/MDS SCIEX API 100LC MS.
Definition: cv.hpp:8053
MS_ionization_mode_OBSOLETE
ionization mode: Whether positive or negative ions are selected for analysis by the spectrometer...
Definition: cv.hpp:127
MS_probability_for_proteins
probability for proteins: Probability that a specific protein sequence has been correctly identified ...
Definition: cv.hpp:7393
MS_GENOLINK
GENOLINK: Bruker GENOLINK software.
Definition: cv.hpp:2686
UNIMOD_ExacTagThiol
ExacTagThiol: ExacTag Thiol label mass for 2-4-7-10 plex.
Definition: cv.hpp:9937
UNIMOD_UgiJoullieProGly
UgiJoullieProGly: Side reaction of PG with Side chain of aspartic or glutamic acid.
Definition: cv.hpp:11131
MS_Phenyx_MaxPepPvalue
Phenyx:MaxPepPvalue: The maximal peptide p-value for a peptide to be considered for a valid identific...
Definition: cv.hpp:4405
UNIMOD_Hex_3_HexNAc_6_Sulf_2_
Hex(3)HexNAc(6)Sulf(2): Hex(3) HexNAc(6) Sulf(2).
Definition: cv.hpp:11734
MS_TOPP_ConsensusID
TOPP ConsensusID: Computes a consensus identification from peptide identifications of several identif...
Definition: cv.hpp:6853
MS_LCMS_IT_TOF
LCMS-IT-TOF: Shimadzu Scientific Instruments LCMS-IT-TOF MS.
Definition: cv.hpp:2320
MS_intensity_normalization
intensity normalization: Normalization of data point intensities.
Definition: cv.hpp:4699
MS_SEQUEST_expectation_value
SEQUEST:expectation value: The SEQUEST result &#39;Expectation value&#39;.
Definition: cv.hpp:3784
UO_luminous_intensity_unit
luminous intensity unit: A unit which is a standard measure of the wavelength-weighted power emitted ...
Definition: cv.hpp:12517
MS_ProteomeDiscoverer_Spectrum_Selector_Precursor_Clipping_Range_After
ProteomeDiscoverer:Spectrum Selector:Precursor Clipping Range After: Precursor clipping range after...
Definition: cv.hpp:6535
UNIMOD_spermidine
spermidine: Spermidine adduct.
Definition: cv.hpp:11413
MS_Exactive_Plus
Exactive Plus: Thermo Scientific Exactive Plus MS.
Definition: cv.hpp:7870
MS_data_processing_parameter
data processing parameter: Data processing parameter used in the data processing performed on the dat...
Definition: cv.hpp:2410
MS_ProteinExtractor_MaxNumberOfProteins
ProteinExtractor:MaxNumberOfProteins: The maximum number of proteins to consider. ...
Definition: cv.hpp:4522
MS_axial_ejection_linear_ion_trap
axial ejection linear ion trap: A linear ion trap mass spectrometer where ions are ejected along the ...
Definition: cv.hpp:370
MS_detector_acquisition_mode
detector acquisition mode: Method by which detector signal is acquired by the data system...
Definition: cv.hpp:184
MS_quadrupole
quadrupole: A mass spectrometer that consists of four parallel rods whose centers form the corners of...
Definition: cv.hpp:382
UNIMOD_Gln__pyro_Glu
Gln->pyro-Glu: Pyro-glu from Q.
Definition: cv.hpp:8485
UNIMOD_Arg__Glu
Arg->Glu: Arg->Glu substitution.
Definition: cv.hpp:10885
UNIMOD_Cy3_maleimide
Cy3-maleimide: Cy3 Maleimide mono-Reactive dye.
Definition: cv.hpp:11257
UNIMOD_Formyl
Formyl: Formylation.
Definition: cv.hpp:8653
UNIMOD_Hex_3_HexNAc_1_Me_1_
Hex(3)HexNAc(1)Me(1): Hex(3) HexNAc Me.
Definition: cv.hpp:11854
UNIMOD_Ub_fluorescein
Ub-fluorescein: Ub Fluorescein probe addition.
Definition: cv.hpp:11092
MS_chemi_ionization
chemi-ionization: The reaction of a neutral molecule with an internally excited molecule to form an i...
Definition: cv.hpp:1579
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex Hex(3) HexA HexNAc(2) Sulf.
Definition: cv.hpp:12145
MS_includes_supersede_excludes
includes supersede excludes: A priority setting specifying that included targets have priority over t...
Definition: cv.hpp:3316
MS_PSM_level_FDRScore
PSM-level FDRScore: mzidLibrary FDRScore for peptide spectrum matches.
Definition: cv.hpp:7357
MS_Phenyx_Scoring_Model
Phenyx:Scoring Model: The selected scoring model in Phenyx.
Definition: cv.hpp:4378
MS_6330_Ion_Trap_LC_MS
6330 Ion Trap LC/MS: The 6330 Ion Trap LC/MS is a Agilent liquid chromatography instrument combined w...
Definition: cv.hpp:1870
UNIMOD_dHex_1_Hex_1_HexNAc_2_Kdn_1_
dHex(1)Hex(1)HexNAc(2)Kdn(1): DHex Hex HexNAc(2) Kdn.
Definition: cv.hpp:11977
UNIMOD_dichlorination
dichlorination: Dichlorination.
Definition: cv.hpp:10207
UNIMOD_Bacillosamine
Bacillosamine: 2,4-diacetamido-2,4,6-trideoxyglucopyranose.
Definition: cv.hpp:10165
MS_numerator_data_type_attribute
numerator data type attribute: Attribute describing the data type of the numerator of a ratio...
Definition: cv.hpp:6742
UO_newton_per_meter
newton per meter: A surface tension unit which is equal to one newton per meter.
Definition: cv.hpp:13252
UO_catalytic__activity__concentration_unit
catalytic (activity) concentration unit: A concentration unit which is a standard measure of the amou...
Definition: cv.hpp:13096
MS_LTQ_Orbitrap_Velos
LTQ Orbitrap Velos: Finnigan LTQ Orbitrap Velos MS.
Definition: cv.hpp:5482
MS_ITQ_1100
ITQ 1100: Thermo Scientific ITQ 1100 GC-MS.
Definition: cv.hpp:2431
MS_cleavage_agent_details
cleavage agent details: Details of cleavage agent (enzyme).
Definition: cv.hpp:3466
UNIMOD_PhosphoHex_2_
PhosphoHex(2): H1O3P1Hex2.
Definition: cv.hpp:11401
MS_GPS_Explorer
GPS Explorer: SCIEX or Applied Biosystems software for data acquisition and analysis.
Definition: cv.hpp:2500
MS_multiple_peak_list_nativeID_format
multiple peak list nativeID format: Native format defined by index=xsd:nonNegativeInteger.
Definition: cv.hpp:2842
UNIMOD_IDEnT
IDEnT: Isotope Distribution Encoded Tag.
Definition: cv.hpp:9967
UNIMOD_Hex_5_HexNAc_3_
Hex(5)HexNAc(3): Hex(5) HexNAc(3).
Definition: cv.hpp:11548
UNIMOD_Trp__Cys
Trp->Cys: Trp->Cys substitution.
Definition: cv.hpp:9832
MS_Phenyx_AC
Phenyx:AC: The primary sequence database identifier of a protein in Phenyx.
Definition: cv.hpp:4414
UO_kilogram_per_meter
kilogram per meter: An area density unit which is equal to the mass of an object in kilograms divided...
Definition: cv.hpp:13042
MS_MSQuant
MSQuant: MSQuant software.
Definition: cv.hpp:6202
MS_retention_time_s__OBSOLETE
retention time(s): Retention time of the spectrum from the source file.
Definition: cv.hpp:3649
MS_DB_filter_on_accession_numbers
DB filter on accession numbers: Filtering applied specifically by accession number pattern...
Definition: cv.hpp:3409
UNIMOD_dHex_1_Hex_2_HexA_1_HexNAc_1_
dHex(1)Hex(2)HexA(1)HexNAc(1): DHex Hex(2) HexA HexNAc.
Definition: cv.hpp:11926
MS_Paragon__instrument_setting
Paragon: instrument setting: The Paragon method setting (translating to a large number of lower level...
Definition: cv.hpp:7564
MS_SEND
SEND (surface enhanced neat desorption): Matrix-assisted laser desorption ionization in which the mat...
Definition: cv.hpp:1222
MS_customization
customization: Free text description of a single customization made to the instrument; for several mo...
Definition: cv.hpp:199
MS_molecular_formula
molecular formula: A chemical compound formula expressing the number of atoms of each element present...
Definition: cv.hpp:3148
MS_MS_GF_EValue
MS-GF:EValue: MS-GF E-value.
Definition: cv.hpp:6451
UNIMOD_Methyl_PEO12_Maleimide
Methyl-PEO12-Maleimide: Methyl-PEO12-Maleimide.
Definition: cv.hpp:10117
UNIMOD_LG_Hlactam_K
LG-Hlactam-K: Levuglandinyl - lysine hydroxylactam adduct.
Definition: cv.hpp:9373
UO_volt_per_meter
volt per meter: The volt per meter is a unit of electric field strength equal to the a potential diff...
Definition: cv.hpp:13294
MS_collision_gas_pressure
collision gas pressure: The gas pressure of the collision gas used for collisional excitation...
Definition: cv.hpp:3157
MS_XCMS
XCMS: Bioconductor package XCMS for preprocessing high-throughput, untargeted analyte profiling data...
Definition: cv.hpp:4990
MS_transition_optimized_on_specified_instrument
transition optimized on specified instrument: The transition has been optimized by direct injection o...
Definition: cv.hpp:3286
UO_electronvolt
electronvolt: A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electro...
Definition: cv.hpp:13288
MS_native_spectrum_identifier_format__combined_spectra
native spectrum identifier format, combined spectra: Describes how the native spectrum identifiers th...
Definition: cv.hpp:8236
UNIMOD_SMCC_maleimide
SMCC-maleimide: Modified SMCC maleimide with 3-(dimethylamino)-1-propylamine.
Definition: cv.hpp:10162
MS_Electron_Transfer_Higher_Energy_Collision_Dissociation__EThcD_
Electron-Transfer/Higher-Energy Collision Dissociation (EThcD): A dissociation process combining elec...
Definition: cv.hpp:8188
MS_stable_ion_OBSOLETE
stable ion: An ion with internal energy sufficiently low that it does not rearrange or dissociate pri...
Definition: cv.hpp:1555
MS_protein_level_result_list_statistic
protein-level result list statistic: A statistical metric of an entire protein list.
Definition: cv.hpp:8413
UNIMOD_cGMP_RMP_loss
cGMP+RMP-loss: S-guanylation-2.
Definition: cv.hpp:10063
MS_peptide_passes_threshold
peptide passes threshold: A Boolean attribute to determine whether the peptide has passed the thresho...
Definition: cv.hpp:7792
MS_MIDAS_Workflow_Designer
MIDAS Workflow Designer: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2536
MS_PIA_protein_inference_used_score
PIA:protein inference used score: The used base score for the protein inference using PIA...
Definition: cv.hpp:7486
UNIMOD_dHex_1_Hex_4_HexNAc_3_Sulf_1_
dHex(1)Hex(4)HexNAc(3)Sulf(1): DHex Hex(4) HexNAc(3) Sulf.
Definition: cv.hpp:11557
MS_MALDI_Synapt_G2_HDMS
MALDI Synapt G2 HDMS: Waters oa-ToF based MALDI Synapt G2 HDMS.
Definition: cv.hpp:5569
MS_Xcalibur
Xcalibur: Thermo Finnigan software for data acquisition and analysis.
Definition: cv.hpp:2050
UNIMOD_Propionamide
Propionamide: Acrylamide adduct.
Definition: cv.hpp:8473
MS_ClinProTools
ClinProTools: Bruker ClinProTools software.
Definition: cv.hpp:2650
UO_viscosity_unit
viscosity unit: A unit which is a standard measure of the internal resistance of fluids to flow...
Definition: cv.hpp:13258
UNIMOD_Xlink_DSS_NH2
Xlink:DSS-NH2: Ammonium-quenched monolink of DSS/BS3 crosslinker to Lys or N-terminus.
Definition: cv.hpp:12472
UNIMOD_Carboxy__Thiocarboxy
Carboxy->Thiocarboxy: Thiocarboxylic acid.
Definition: cv.hpp:9223
MS_Surveyor_MSQ
Surveyor MSQ: ThermoFinnigan Surveyor MSQ MS.
Definition: cv.hpp:787
UNIMOD_Propyl
Propyl: Propyl.
Definition: cv.hpp:11188
MS_Paragon_expression_error_factor
Paragon:expression error factor: The Paragon result &#39;Expression Error Factor&#39;.
Definition: cv.hpp:3811
MS_peak_area_OBSOLETE
peak area: Area of MS1 peak (e.g. SILAC, 15N).
Definition: cv.hpp:5791
UO_normal
normal: A unit of concentration which is one gram equivalent of a solute per liter of solution...
Definition: cv.hpp:12721
UNIMOD_Hex_1_HexNAc_2_dHex_1_
Hex(1)HexNAc(2)dHex(1): Hex1HexNAc2dHex1.
Definition: cv.hpp:8731
UNIMOD_PyruvicAcidIminyl
PyruvicAcidIminyl: N-pyruvic acid 2-iminyl.
Definition: cv.hpp:9229
MS_Linked_Scan_at_Constant_E2_V_OBSOLETE
Linked Scan at Constant E2/V: A linked scan performed on a sector instrument that incorporates at lea...
Definition: cv.hpp:1411
MS_ProteomeDiscoverer_Mascot_Weight_of_D_Ions
ProteomeDiscoverer:Mascot:Weight of D Ions: Determines if to use D ions for spectrum matching...
Definition: cv.hpp:5494
UNIMOD_Cys__Gln
Cys->Gln: Cys->Gln substitution.
Definition: cv.hpp:10507
MS_ProteomeDiscoverer_Mascot_Taxonomy_OBSOLETE
ProteomeDiscoverer:Mascot:Taxonomy: Limits searches to entries from a particular species or group of ...
Definition: cv.hpp:5251
MS_ProteinScape
ProteinScape: Bruker ProteinScape software.
Definition: cv.hpp:2719
MS_6130_Quadrupole_LC_MS
6130 Quadrupole LC/MS: The 6130 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1855
MS_API_2000
API 2000: Applied Biosystems/MDS SCIEX API 2000 MS.
Definition: cv.hpp:643
UO_candela_per_square_meter
candela per square meter: A luminance unit which is equal to a luminous intensity of one candela radi...
Definition: cv.hpp:12751
MS_ProteomeDiscoverer_MS_Order_OBSOLETE
ProteomeDiscoverer:MS Order: Level of the mass spectrum (MS2 ... MS10).
Definition: cv.hpp:5086
UNIMOD_Label_18O_1_
Label:18O(1): O18 Labeling.
Definition: cv.hpp:8860
MS_charge_stripping_reaction_OBSOLETE
charge stripping reaction: Reaction of a positive ion with a neutral species in which the positive ch...
Definition: cv.hpp:1669
MS_dissociation_method
dissociation method: Fragmentation method used for dissociation or fragmentation. ...
Definition: cv.hpp:247
UO_nanovolt
nanovolt: An electric potential difference unit which is equal to one billionth of a volt or 10^[-12]...
Definition: cv.hpp:13240
UO_ampere
ampere: An electric current unit which is equal to the constant current which, if maintained in two s...
Definition: cv.hpp:12529
MS_IdentityE_Score
IdentityE Score: Waters IdentityE peptide score.
Definition: cv.hpp:4948
MS_ABI_WIFF_format
ABI WIFF format: Applied Biosystems WIFF file format.
Definition: cv.hpp:2143
MS_ProteomeDiscoverer_Non_Fragment_Filter_Remove_Only_Known_Masses
ProteomeDiscoverer:Non-Fragment Filter:Remove Only Known Masses: Determines whether overtone peaks ar...
Definition: cv.hpp:5134
MS_partial_charge_transfer_reaction_OBSOLETE
partial charge transfer reaction: Reaction of an ion with a neutral species in which some but not all...
Definition: cv.hpp:1738
UNIMOD_Methyl_2H_3__Acetyl_2H_3_
Methyl:2H(3)+Acetyl:2H(3): 3-fold methylated lysine labelled with Acetyl_heavy.
Definition: cv.hpp:11287
UNIMOD_Hex_3_HexNAc_1_
Hex(3)HexNAc(1): Hex(3) HexNAc.
Definition: cv.hpp:11842
UNIMOD_Diethyl
Diethyl: Diethylation, analogous to Dimethylation.
Definition: cv.hpp:9397
MS_ProteomeDiscoverer_SEQUEST_Calculate_Probability_Score
ProteomeDiscoverer:SEQUEST:Calculate Probability Score: Determines whether to calculate a probability...
Definition: cv.hpp:5263
UNIMOD_Val__Thr
Val->Thr: Val->Thr substitution.
Definition: cv.hpp:10975
MS_PSM_level_attribute
PSM-level attribute: Attribute of a single peptide-spectrum match.
Definition: cv.hpp:7327
UNIMOD_Asp__Lys
Asp->Lys: Asp->Lys substitution.
Definition: cv.hpp:10525
MS_phosphoRS_score
phosphoRS score: phosphoRS score for PTM site location at the PSM-level.
Definition: cv.hpp:6172
MS_EI_OBSOLETE
EI (Electronic Ionization): The ionization of an atom or molecule by electrons that are typically acc...
Definition: cv.hpp:343
MS_PSD
PSD (post-source decay): A technique specific to reflectron time-of-flight mass spectrometers where p...
Definition: cv.hpp:607
MS_collisional_excitation_OBSOLETE
collisional excitation: The reaction of an ion with a neutral species in which the translational ener...
Definition: cv.hpp:1675
MS_frag__z_ion___NH3
frag: z ion - NH3: Fragmentation information, type of product: z ion without ammonia.
Definition: cv.hpp:4801
UNIMOD_Ser__Cys
Ser->Cys: Ser->Cys substitution.
Definition: cv.hpp:9772
UNIMOD_Thr__Pro
Thr->Pro: Thr->Pro substitution.
Definition: cv.hpp:9796
UNIMOD_dHex_2_Hex_4_HexNAc_1_
dHex(2)Hex(4)HexNAc(1): DHex(2) Hex(4) HexNAc.
Definition: cv.hpp:12067
UO_milliliter_per_liter
milliliter per liter: A volume per unit volume unit which is equal to one millionth of a liter of sol...
Definition: cv.hpp:13111
MS_SEQUEST_sort_by_Sp
SEQUEST:sort by Sp: Sort order of SEQUEST search results by the Sp score.
Definition: cv.hpp:3526
UNIMOD_Xlink_SSD
Xlink:SSD: Covalent modification of lysine by cross-linking reagent.
Definition: cv.hpp:8896
MS_Paragon_total_protscore
Paragon:total protscore: The Paragon result &#39;Total ProtScore&#39;.
Definition: cv.hpp:3802
MS_leukocyte_elastase
leukocyte elastase: Enzyme leukocyte elastase (EC 3.4.21.37).
Definition: cv.hpp:6001
UNIMOD_dHex_1_Hex_3_HexNAc_4_Pent_3_
dHex(1)Hex(3)HexNAc(4)Pent(3): DHex Hex(3) HexNAc(4) Pent(3).
Definition: cv.hpp:11719
MS_ProteomeDiscoverer_Mass_Analyzer_OBSOLETE
ProteomeDiscoverer:Mass Analyzer: Type of mass spectrometer used (ITMS, FTMS, TOFMS, SQMS, TQMS, SectorMS).
Definition: cv.hpp:5074
MS_Mascot_total_ions
Mascot:total ions: The Mascot result &#39;Total ions&#39;.
Definition: cv.hpp:3829
MS_CompassXtract
CompassXtract: Bruker software library for data access.
Definition: cv.hpp:2671
MS_peptide_PSM_count
peptide PSM count: The number of MS2 spectra identified for this peptide in spectral counting...
Definition: cv.hpp:5782
MS_static_supply_electrospray
static supply electrospray: The sprayer is loaded with sample once.
Definition: cv.hpp:6088
UNIMOD_Pro__Ser
Pro->Ser: Pro->Ser substitution.
Definition: cv.hpp:9679
MS_ProteomeDiscoverer_Mascot_Weight_of_Y_Ions
ProteomeDiscoverer:Mascot:Weight of Y Ions: Determines if to use Y ions for spectrum matching...
Definition: cv.hpp:5506
MS_precursor_activation
precursor activation: Terms to describe the precursor activation.
Definition: cv.hpp:1807
MS_electrospray_inlet
electrospray inlet: Inlet used for introducing the liquid sample into an electrospray ionization sour...
Definition: cv.hpp:289
UNIMOD_Hex_7_Phos_3_
Hex(7)Phos(3): Hex(7) Phos(3).
Definition: cv.hpp:12190
MS_PEAKS_Studio
PEAKS Studio: PEAKS Studio software for data analysis.
Definition: cv.hpp:6103
MS_decoy_DB_from_IPI_zebrafish_OBSOLETE
decoy DB from IPI_zebrafish: Decoy database from a International Protein Index database for Danio rer...
Definition: cv.hpp:4138
UNIMOD_dHex_1_Hex_1_HexNAc_3_NeuGc_1_
dHex(1)Hex(1)HexNAc(3)NeuGc(1): DHex Hex HexNAc(3) NeuGc.
Definition: cv.hpp:12106
MS_flow_rate_array
flow rate array: A data array of flow rate measurements.
Definition: cv.hpp:3007
MS_negative_ion_OBSOLETE
negative ion: An atomic or molecular species having a net negative electric charge.
Definition: cv.hpp:1531
UNIMOD_dHex_4_Hex_2_HexNAc_2_Kdn_1_
dHex(4)Hex(2)HexNAc(2)Kdn(1): DHex(4) Hex(2) HexNAc(2) Kdn.
Definition: cv.hpp:12292
UNIMOD_Gly__Pro
Gly->Pro: Gly->Pro substitution.
Definition: cv.hpp:10642
MS_SILACAnalyzer
SILACAnalyzer: Software for SILAC workflow.
Definition: cv.hpp:5749
MS_TissueView_Software
TissueView Software: Applied Biosystems|MDS SCIEX software for tissue imaging.
Definition: cv.hpp:2509
MS_cross_link_spectrum_identification_item
cross-link spectrum identification item: Cross-linked spectrum identification item.
Definition: cv.hpp:7825
UO_watt_per_square_meter
watt per square meter: An irradiance unit which is equal to 1 watt of radiant power incident per one ...
Definition: cv.hpp:12955
MS_MGF_scans_OBSOLETE
MGF scans: OBSOLETE: replaced by MS:1000797 (peak list scans): This term can hold the scans attribute...
Definition: cv.hpp:4483
MS_selected_ion_monitoring_chromatogram
selected ion monitoring chromatogram: Chromatogram created by creating an array of the measurements o...
Definition: cv.hpp:4654
UNIMOD_dHex_1_Hex_4_HexNAc_5_
dHex(1)Hex(4)HexNAc(5): DHex Hex(4) HexNAc(5).
Definition: cv.hpp:11701
MS_6460_Triple_Quadrupole_LC_MS
6460 Triple Quadrupole LC/MS: The 6460 Quadrupole LC/MS system is a Agilent liquid chromatography ins...
Definition: cv.hpp:7627
MS_SIM_chromatogram
SIM chromatogram (selected ion monitoring chromatogram): Chromatogram created by creating an array of...
Definition: cv.hpp:4657
MS_ProteinExtractor_UseSequest
ProteinExtractor:UseSequest: Flag indicating to include SEQUEST scoring for calculation of the Protei...
Definition: cv.hpp:4546
MS_iTRAQ_reagent_118
iTRAQ reagent 118: The name of the sample labelled with the iTRAQ reagent 118.
Definition: cv.hpp:8179
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_2_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1): DHex(2) Hex(3) HexA HexNAc(2) Sulf.
Definition: cv.hpp:12226
UNIMOD_dHex_1_Hex_3_HexNAc_4_
dHex(1)Hex(3)HexNAc(4): Fucosylated biantennary (-2 galactose).
Definition: cv.hpp:8962
MS_atmospheric_pressure_ionization
atmospheric pressure ionization: Any ionization process in which ions are formed in the gas phase at ...
Definition: cv.hpp:982
UNIMOD_Phe__Asp
Phe->Asp: Phe->Asp substitution.
Definition: cv.hpp:10588
MS_DB_MW_filter_minimum
DB MW filter minimum: Minimum value of molecular weight filter.
Definition: cv.hpp:3889
MS_glutamyl_endopeptidase
glutamyl endopeptidase: Enzyme glutamyl endopeptidase (EC 3.4.21.19).
Definition: cv.hpp:6007
MS_spectral_count_feature
spectral count feature: Dummy decribing a spectral count feature.
Definition: cv.hpp:6652
MS_crushed_crystal_MALDI_sample_preparation
crushed crystal MALDI sample preparation: Crushed-crystal MALDI sample preparation method...
Definition: cv.hpp:6235
MS_analyzer_scan_offset
analyzer scan offset: Offset between two analyzers in a constant neutral loss or neutral gain scan...
Definition: cv.hpp:2950
MS_moving_average_smoothing
moving average smoothing: Reduces intensity spikes by averaging each point with two or more adjacent ...
Definition: cv.hpp:2881
UNIMOD_TMT6plex
TMT6plex: Sixplex Tandem Mass Tag®.
Definition: cv.hpp:9928
MS_PSM_level_probability
PSM-level probability: Probability that the reported peptide ion is truly responsible for some or all...
Definition: cv.hpp:7363
MS_protein_pair_level_global_FDR
protein-pair-level global FDR: Estimation of the global false discovery rate of proteins-pairs in cro...
Definition: cv.hpp:8329
MS_ProteomeDiscoverer_max_number_neutral_loss_modifications
ProteomeDiscoverer:max number neutral loss modifications: Max number of same neutral losses of modifi...
Definition: cv.hpp:7267
UO_pascal
pascal: A pressure unit which is equal to the pressure or stress on a surface caused by a force of 1 ...
Definition: cv.hpp:12826
MS_MS_MS_in_Time_OBSOLETE
MS/MS in Time: A tandem mass spectrometry method in which product ion spectra are recorded in a singl...
Definition: cv.hpp:1420
UNIMOD_Gln__Trp
Gln->Trp: Gln->Trp substitution.
Definition: cv.hpp:10873
UNIMOD_Hex_1_HexNAc_1_dHex_1_Me_1_
Hex(1)HexNAc(1)dHex(1)Me(1): Hex HexNAc dHex Me.
Definition: cv.hpp:11452
UNIMOD_Pro__His
Pro->His: Pro->His substitution.
Definition: cv.hpp:9685
MS_Tide
Tide: Tide open-source sequence search program developed at the University of Washington.
Definition: cv.hpp:8020
MS_Synapt_G2_MS
Synapt G2 MS: Waters oa-ToF based Synapt G2 MS.
Definition: cv.hpp:5590
MS_ProteomeDiscoverer_Xtract_Required_Fitting_Accuracy
ProteomeDiscoverer:Xtract:Required Fitting Accuracy: Accuracy required for a pattern fit to be consid...
Definition: cv.hpp:5173
MS_ion_optics_attribute
ion optics attribute: Ion optics involves components that help focus ion streams in mass spectrometry...
Definition: cv.hpp:1909
MS_combined_FDRScore_OBSOLETE
combined FDRScore: FDRScore values specifically obtained for distinct combinations of single...
Definition: cv.hpp:6664
MS_MaxQuant_LFQ_intensity
MaxQuant:LFQ intensity: The data type LFQ intensity produced by MaxQuant.
Definition: cv.hpp:5962
MS_MS_OBSOLETE
MS (mass spectrometry): The branch of science that deals with all aspects of mass spectrometers and t...
Definition: cv.hpp:1156
MS_activation
activation (precursor activation): Terms to describe the precursor activation.
Definition: cv.hpp:1810
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge2
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge2: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5407
MS______EZ_____P_
(?<=[EZ])(?!P): Regular expression for V8-E.
Definition: cv.hpp:4273
UNIMOD_Hex_1_NeuAc_1_Pent_1_
Hex(1)NeuAc(1)Pent(1): Hex NeuAc Pent.
Definition: cv.hpp:11470
MS_PI
PI (photoionization): The ionization of an atom or molecule by a photon, written M + h...
Definition: cv.hpp:1186
MS_protein_accession
protein accession: Accession number for a specific protein in a database.
Definition: cv.hpp:3205
MS_GC_Quantum
GC Quantum: GC Quantum.
Definition: cv.hpp:2131
UNIMOD_DTT_ST_2H_6_
DTT_ST:2H(6): Isotopically labeled Dithiothreitol (DTT) modification of serines or threonines...
Definition: cv.hpp:9970
MS_two_sample_run
two sample run: The raw file contains the run of two samples (e.g. SILAC, metabolic labelling)...
Definition: cv.hpp:5713
MS_ProteomeDiscoverer_max_equal_modifications
ProteomeDiscoverer:max equal modifications: Maximum equal modifications per PSM.
Definition: cv.hpp:7255
UNIMOD_Pro__Gln
Pro->Gln: Pro->Gln substitution.
Definition: cv.hpp:9688
MS_value_greater_than_zero_but_less_than_or_equal_to_one
value greater than zero but less than or equal to one: Positive value range less than or equal to 1...
Definition: cv.hpp:7339
UNIMOD_Val__Asp
Val->Asp: Val->Asp substitution.
Definition: cv.hpp:9820
MS_MALDI_Solutions_Microbial_Identification
MALDI Solutions Microbial Identification: Shimadzu Biotech software for data acquisition, processing, and analysis.
Definition: cv.hpp:5890
MS_TOPP_MascotAdapterOnline
TOPP MascotAdapterOnline: Identifies MS2 spectra using the online version of the external program Mas...
Definition: cv.hpp:6838
MS_dalton_OBSOLETE
dalton: A non-SI unit of mass (symbol Da) that is equal to the unified atomic mass unit: 1...
Definition: cv.hpp:862
UNIMOD_Delta_Se_1_
Delta:Se(1): Selenyl.
Definition: cv.hpp:9232
MS_PinPoint
PinPoint: Thermo Scientific PinPoint SRM analysis software.
Definition: cv.hpp:5992
MS_focus_diameter_y
focus diameter y: Describes the diameter of the laser beam in y direction.
Definition: cv.hpp:3079
MS_HyStar
HyStar: Bruker software for hyphenated experiments.
Definition: cv.hpp:2998
MS_TagRecon_mzFidelity
TagRecon:mzFidelity (MyriMatch:mzFidelity): The negative natural log probability that predicted peaks...
Definition: cv.hpp:5026
MS_Triple_Quad_6500
Triple Quad 6500: SCIEX Triple Quad 6500.
Definition: cv.hpp:8077
MS_TOF
TOF (time-of-flight): Instrument that separates ions by m/z in a field-free region after acceleration...
Definition: cv.hpp:403
UNIMOD_dHex_2_Hex_3_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(3) HexA HexNAc(3) Sulf.
Definition: cv.hpp:12316
MS_search_type
search type: Enumeration of type of search value (i.e. from PMF, sequence tag, MS2).
Definition: cv.hpp:3547
MS_reaction
reaction (transition): A set of two m/z values corresponding to the precursor m/z and a fragment m/z ...
Definition: cv.hpp:3280
UNIMOD_Amidino
Amidino: Amidino.
Definition: cv.hpp:9277
MS_xiFDR
xiFDR: Target/Decoy based FDR estimation for cross-linking peptide-identifications.
Definition: cv.hpp:7924
MS_Proteios
Proteios: Database application and analysis platform for proteomics.
Definition: cv.hpp:2308
UNIMOD_DTBP
DTBP: Dimethyl 3,3\&#39;-dithiobispropionimidate.
Definition: cv.hpp:9004
MS_Comet_deltacn
Comet:deltacn: The Comet result &#39;DeltaCn&#39;.
Definition: cv.hpp:7048
UNIMOD_Met__Gln
Met->Gln: Met->Gln substitution.
Definition: cv.hpp:10765
MS_TRACE_DSQ
TRACE DSQ: ThermoFinnigan TRACE DSQ MS.
Definition: cv.hpp:799
MS_Multiple_Ion_Monitoring
Multiple Ion Monitoring (selected ion monitoring): The operation of a mass spectrometer in which the ...
Definition: cv.hpp:826
UNIMOD_15N_oxobutanoic
15N-oxobutanoic: Loss of ammonia (15N).
Definition: cv.hpp:11407
UO_microgram
microgram: A mass unit which is equal to one millionth of a gram or 10^[-6] g.
Definition: cv.hpp:12565
MS_ProteomeDiscoverer_Mascot_Weight_of_X_Ions
ProteomeDiscoverer:Mascot:Weight of X Ions: Determines if to use X ions for spectrum matching...
Definition: cv.hpp:5503
MS_transient_recorder
transient recorder: A detector acquisition mode used for detecting transient signals.
Definition: cv.hpp:538
UNIMOD_Propyl_2H_6_
Propyl:2H(6): Propyl:2H(6).
Definition: cv.hpp:11191
MS_reflectron_off
reflectron off: Reflectron is off.
Definition: cv.hpp:472
UNIMOD_Heme
Heme: Heme.
Definition: cv.hpp:9145
UNIMOD_DyLight_maleimide
DyLight-maleimide: Thiol-reactive dye for fluorescence labelling of proteins.
Definition: cv.hpp:10114
MS_TOPP_FeatureLinkerUnlabeledQT
TOPP FeatureLinkerUnlabeledQT: Groups corresponding features from multiple maps using a quality thres...
Definition: cv.hpp:6820
MS_ITQ_900
ITQ 900: Thermo Scientific ITQ 900 GC-MS.
Definition: cv.hpp:2428
MS_charge_deconvolution
charge deconvolution: The determination of the mass of an ion based on the mass spectral peaks that r...
Definition: cv.hpp:205
UNIMOD_Hex_1_HexNAc_1_NeuGc_3_
Hex(1)HexNAc(1)NeuGc(3): Hex HexNAc NeuGc(3).
Definition: cv.hpp:12139
MS_MRMPilot_Software
MRMPilot Software: Applied Biosystems|MDS SCIEX software for MRM assay development.
Definition: cv.hpp:2515
MS_scan_rate
scan rate: Rate in Th/sec for scanning analyzers.
Definition: cv.hpp:145
UNIMOD_Delta_H_1_N__1_18O_1_
Delta:H(1)N(-1)18O(1): Glycosylated asparagine 18O labeling.
Definition: cv.hpp:8764
UNIMOD_Carbamidomethyl
Carbamidomethyl: Iodoacetamide derivative.
Definition: cv.hpp:8431
UNIMOD_ICAT_D
ICAT-D: Applied Biosystems original ICAT(TM) d0.
Definition: cv.hpp:8458
UO_deciliter
deciliter: A volume unit which is equal to one tenth of a liter or 10^[-1] L.
Definition: cv.hpp:13117
UNIMOD_Homocysteic_acid
Homocysteic_acid: Methionine oxidation to homocysteic acid.
Definition: cv.hpp:11326
UNIMOD_Tyr__Met
Tyr->Met: Tyr->Met substitution.
Definition: cv.hpp:11035
UO_millimolar
millimolar: A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M...
Definition: cv.hpp:12685
MS_ProteinProspector_score
ProteinProspector:score: The ProteinProspector result &#39;Score&#39;.
Definition: cv.hpp:6421
UNIMOD_Label_15N_2_
Label:15N(2): 15N(2).
Definition: cv.hpp:10330
MS_IPTL_quantitation_analysis
IPTL quantitation analysis: Quantification analysis using a labelling strategy where both peptide ter...
Definition: cv.hpp:6925
MS_AXIMA_Confidence_MALDI_TOF
AXIMA Confidence MALDI-TOF: Shimadzu Biotech AXIMA Confidence MALDI-TOF (curved field reflectron) MS...
Definition: cv.hpp:2341
MS_FAIMS_OBSOLETE
FAIMS (high-field asymmetric waveform ion mobility spectrometry): The separation of ions between two ...
Definition: cv.hpp:1081
MS_contact_name
contact name: Name of the contact person or organization.
Definition: cv.hpp:2257
MS_mzidLib_Perform_emPAI_on_mzid
mzidLib:Perform emPAI on mzid: A routine for adding emPAI quantitative values to an mzIdentML file...
Definition: cv.hpp:7018
MS_Mascot_matched_ions
Mascot:matched ions: The Mascot result &#39;Matched ions&#39;.
Definition: cv.hpp:3826
UO_gram_per_mole
gram per mole: A molar mass unit which is equal to one gram of mass of one mole of chemical element o...
Definition: cv.hpp:12760
UNIMOD_Hex_3_HexNAc_5_
Hex(3)HexNAc(5): Hex(3) HexNAc(5).
Definition: cv.hpp:12424
MS_focus_diameter_x
focus diameter x: Describes the diameter of the laser beam in x direction.
Definition: cv.hpp:3076
MS_dynamic_mass_spectrometry_OBSOLETE
dynamic mass spectrometry: A mass spectrometer in which m/z separation using one or more electric fie...
Definition: cv.hpp:1327
MS_Compass_for_HCT_esquire
Compass for HCT/esquire: Bruker Compass for HCT/esquire software.
Definition: cv.hpp:2656
MS_laser_desorption_ionization
laser desorption ionization: The formation of gas-phase ions by the interaction of a pulsed laser wit...
Definition: cv.hpp:1600
MS_Percolator_features
Percolator:features: List of Percolator features that were used in processing the peptide matches...
Definition: cv.hpp:5536
MS_ITQ_700
ITQ 700: Thermo Scientific ITQ 700 GC-MS.
Definition: cv.hpp:2425
MS_SILAC_light_reagent
SILAC light reagent: The name of the sample labelled with the light SILAC label.
Definition: cv.hpp:8137
MS_SPS
SPS (synchronous prefilter selection): Synchronous prefilter selection.
Definition: cv.hpp:7879
MS_buffer_gas
buffer gas: An inert gas used for collisional deactivation of internally excited ions.
Definition: cv.hpp:1657
UNIMOD_Label_13C_6_15N_2__GG
Label:13C(6)15N(2)+GG: 13C(6) 15N(2) Lysine glygly.
Definition: cv.hpp:10081
MS_McLafferty_Rearrangement_OBSOLETE
McLafferty Rearrangement: A dissociation reaction triggered by transfer of a hydrogen atom via a 6-me...
Definition: cv.hpp:1726
UNIMOD_Gln__Phe
Gln->Phe: Gln->Phe substitution.
Definition: cv.hpp:10852
MS_ionizing_collision_OBSOLETE
ionizing collision: The reaction of an ion with a neutral species in which one or more electrons are ...
Definition: cv.hpp:1702
UNIMOD_Hex_4_
Hex(4): Hex(4).
Definition: cv.hpp:11488
MS_Synapt_HDMS
Synapt HDMS: Waters oa-ToF based Synapt HDMS.
Definition: cv.hpp:5599
UNIMOD_Hex_1_HexNAc_2_NeuAc_2_Sulf_1_
Hex(1)HexNAc(2)NeuAc(2)Sulf(1): Hex HexNAc(2) NeuAc(2) Sulf.
Definition: cv.hpp:12109
MS_ZCore_probScore
ZCore:probScore: The ZCore probability score.
Definition: cv.hpp:6121
MS_SIM
SIM (selected ion monitoring): The operation of a mass spectrometer in which the intensities of sever...
Definition: cv.hpp:829
UNIMOD_FMNC
FMNC: S-(4a-FMN).
Definition: cv.hpp:9283
std::string version
the version of the CV from which the referred-to terms are drawn.
Definition: cv.hpp:13365
MS_ProteomeDiscoverer_SEQUEST_FT_Medium_Confidence_XCorr_Charge1
ProteomeDiscoverer:SEQUEST:FT Medium Confidence XCorr Charge1: FT medium confidence XCorr parameter f...
Definition: cv.hpp:5404
UNIMOD_IodoU_AMP
IodoU-AMP: Cross-link of (Iodo)-uracil MP with W,F,Y.
Definition: cv.hpp:8935
UNIMOD_Ala__Thr
Ala->Thr: Ala->Thr substitution.
Definition: cv.hpp:9457
MS_SEQUEST_Sequences
SEQUEST:Sequences:
Definition: cv.hpp:4366
MS_time_series__time_point_X
time series, time point X: The experimental design followed a time series design. The time point of t...
Definition: cv.hpp:5701
MS_frag__precursor_ion___H2O
frag: precursor ion - H2O: Fragmentation information, type of product: precursor ion without water...
Definition: cv.hpp:4810
MS_elution_time
elution time: The time of elution from all used chromatographic columns (one or more) in the chromato...
Definition: cv.hpp:3025
MS_multiple_stage_mass_spectrometry_spectrum
multiple-stage mass spectrometry spectrum (MSn spectrum): MSn refers to multi-stage MS2 experiments d...
Definition: cv.hpp:2215
UNIMOD_Pro__Phe
Pro->Phe: Pro->Phe substitution.
Definition: cv.hpp:10819
MS_spectrum_identifier_nativeID_format__combined_spectra
spectrum identifier nativeID format, combined spectra: Comma separated list of spectra that have been...
Definition: cv.hpp:8269
UNIMOD_Trp__Asn
Trp->Asn: Trp->Asn substitution.
Definition: cv.hpp:11005
UNIMOD_Hex_4_HexNAc_4_Sulf_2_
Hex(4)HexNAc(4)Sulf(2): Hex(4) HexNAc(4) Sulf(2).
Definition: cv.hpp:12307
MS_MSn_OBSOLETE
MSn (multiple stage mass spectrometry): Multiple stages of precursor ion m/z selection followed by pr...
Definition: cv.hpp:1168
MS_API_150EX
API 150EX: Applied Biosystems/MDS SCIEX API 150EX MS.
Definition: cv.hpp:637
MS_PROTEINEER_fc
PROTEINEER fc: Bruker PROTEINEER fc software.
Definition: cv.hpp:2710
UNIMOD_Cytopiloyne_water
Cytopiloyne+water: Nucleophilic addition to cytopiloyne+H2O.
Definition: cv.hpp:8890
MS_MS_GF_DeNovoScore
MS-GF:DeNovoScore: MS-GF de novo score.
Definition: cv.hpp:6442
MS_Bruker_FID_format
Bruker FID format: Bruker FID file format.
Definition: cv.hpp:3022
MS_product_ion_spectrum_OBSOLETE
product ion spectrum: A mass spectrum recorded from any spectrometer in which the appropriate m/z sep...
Definition: cv.hpp:1447
MS_isotope_ratio_mass_spectrometry_OBSOLETE
isotope ratio mass spectrometry: The measurement of the relative quantity of the different isotopes o...
Definition: cv.hpp:1120
MS_quality_estimation_by_manual_validation
quality estimation by manual validation: The quality estimation was done manually.
Definition: cv.hpp:3505
MS_SEQUEST_spscore
SEQUEST:spscore: The SEQUEST result &#39;SpScore&#39;.
Definition: cv.hpp:7033
UNIMOD_Hex_4_HexNAc_3_
Hex(4)HexNAc(3): Hex(4) HexNAc(3).
Definition: cv.hpp:12415
MS_DELTA_plusAdvantage
DELTA plusAdvantage: ThermoFinnigan DELTA plusAdvantage MS.
Definition: cv.hpp:667
MS_search_engine_specific_score_for_protein_groups
search engine specific score for protein groups: Search engine specific protein group scores...
Definition: cv.hpp:7396
UNIMOD_Hex_2_HexNAc_1_NeuGc_3_
Hex(2)HexNAc(1)NeuGc(3): Hex(2) HexNAc NeuGc(3).
Definition: cv.hpp:12232
UNIMOD_Phe__Thr
Phe->Thr: Phe->Thr substitution.
Definition: cv.hpp:10618
MS_PSM_level_search_engine_specific_statistic
PSM-level search engine specific statistic: Search engine specific peptide spectrum match scores...
Definition: cv.hpp:3736
UNIMOD_Delta_H_6_C_3_O_1_
Delta:H(6)C(3)O(1): Reduced acrolein addition +58.
Definition: cv.hpp:11197
MS_search_engine_specific_score_for_proteins
search engine specific score for proteins: Search engine specific protein scores. ...
Definition: cv.hpp:7381
UO_sievert
sievert: A dose equivalent unit which is equal to the absorption of one joule of radiation energy by ...
Definition: cv.hpp:12904
MS_association_reaction_OBSOLETE
association reaction: The reaction of an ion with a neutral species in which the reactants combine to...
Definition: cv.hpp:1648
MS_protein_detection_statistical_threshold
protein detection statistical threshold: Estimated statistical threshold used for protein detection...
Definition: cv.hpp:8011
MS_SEQUEST_SequenceHeaderFilter
SEQUEST:SequenceHeaderFilter: String in the header of a sequence entry for that entry to be searched...
Definition: cv.hpp:3430
UO_microliters_per_minute
microliters per minute: A volumetric flow rate unit which is equal to one microliter volume through a...
Definition: cv.hpp:13303
UNIMOD_AHA_SS
AHA-SS: Azidohomoalanine coupled to reductively cleaved tag.
Definition: cv.hpp:11059
UNIMOD_Ala__Cys
Ala->Cys: Ala->Cys substitution.
Definition: cv.hpp:10447
MS_decoy_DB_from_IPI_mouse_OBSOLETE
decoy DB from IPI_mouse: Decoy database from a International Protein Index database for Mus musculus...
Definition: cv.hpp:4129
MS_ion_pair_formation_OBSOLETE
ion-pair formation: The reaction of a molecule to form both a positive ion and negative ion fragment ...
Definition: cv.hpp:1594
UNIMOD_Biotin_Invitrogen_M1602
Biotin:Invitrogen-M1602: Nalpha-(3-maleimidylpropionyl)biocytin.
Definition: cv.hpp:10372
MS_ProteinLynx_Log_Likelihood
ProteinLynx:Log Likelihood: ProteinLynx log likelihood score.
Definition: cv.hpp:4951
UNIMOD_Asn__Gly
Asn->Gly: Asn->Gly substitution.
Definition: cv.hpp:10789
MS_SEQUEST_CullTo
SEQUEST:CullTo: Specify cull string as value of the CVParam.
Definition: cv.hpp:3634
UNIMOD_Hex_4_Phos_1_
Hex(4)Phos(1): Hex(4) Phos.
Definition: cv.hpp:11863
MS_database_IPI_zebrafish
database IPI_zebrafish: International Protein Index database for Danio rerio sequences.
Definition: cv.hpp:4111
MS_unknown_modification
unknown modification: This term should be given if the modification was unknown.
Definition: cv.hpp:4621
UNIMOD_Cytopiloyne
Cytopiloyne: Nucleophilic addtion to cytopiloyne.
Definition: cv.hpp:8887
MS_nanoACQUITY_UPLC
nanoACQUITY UPLC: Waters LC-system nanoACQUITY UPLC.
Definition: cv.hpp:5554
MS_einzel_lens
einzel lens: Three element charged particle lens in which the first and third elements are held at th...
Definition: cv.hpp:1330
MS_TSQ_8000_Evo
TSQ 8000 Evo: Thermo Scientific TSQ 8000 Evo MS.
Definition: cv.hpp:7867
UNIMOD_Decanoyl
Decanoyl: Lipid.
Definition: cv.hpp:9298
UNIMOD_PEO_Iodoacetyl_LC_Biotin
PEO-Iodoacetyl-LC-Biotin: Biotinyl-iodoacetamidyl-3,6-dioxaoctanediamine.
Definition: cv.hpp:8464
MS_peptide_group_label
peptide group label: An arbitrary string label used to mark a set of peptides that belong together in...
Definition: cv.hpp:3232
UNIMOD_Arg__Lys
Arg->Lys: Arg->Lys substitution.
Definition: cv.hpp:9730
MS_D_Score
D-Score: D-Score for PTM site location at the PSM-level.
Definition: cv.hpp:7903
MS_database_original_uri
database original uri: URI, from where the search database was originally downloaded.
Definition: cv.hpp:3391
MS_Byonic_Protein_LogProb
Byonic:Protein LogProb: The log p-value of the protein.
Definition: cv.hpp:7090
MS_TOPP_OpenSwathFeatureXMLToTSV
TOPP OpenSwathFeatureXMLToTSV: Converts a featureXML to a mProphet tsv (tab separated values)...
Definition: cv.hpp:6892
MS_PEAKS_peptideScore
PEAKS:peptideScore: The PEAKS peptide &#39;-10lgP Score&#39;.
Definition: cv.hpp:6115
MS_conversion_dynode
conversion dynode: A surface that is held at high potential such that ions striking the surface produ...
Definition: cv.hpp:1459
MS_LXQ
LXQ: Finnigan LXQ MS.
Definition: cv.hpp:1783
MS_ProteomeXchange_accession_number
ProteomeXchange accession number: Main identifier of a ProteomeXchange dataset.
Definition: cv.hpp:6019
MS_precursor_ion_spectrum
precursor ion spectrum: Spectrum generated by scanning precursor m/z while monitoring a fixed product...
Definition: cv.hpp:1441
UNIMOD_CLIP_TRAQ_4
CLIP_TRAQ_4: CLIP_TRAQ_4.
Definition: cv.hpp:9445
UO_kilogram
kilogram: A mass unit which is equal to the mass of the International Prototype Kilogram kept by the ...
Definition: cv.hpp:12523
MS_atmospheric_pressure_matrix_assisted_laser_desorption_ionization
atmospheric pressure matrix-assisted laser desorption ionization: Matrix-assisted laser desorption io...
Definition: cv.hpp:976
MS_null_terminated_ASCII_string
null-terminated ASCII string: Sequence of zero or more non-zero ASCII characters terminated by a sing...
Definition: cv.hpp:4684
UNIMOD_dHex_2_Hex_4_HexA_1_HexNAc_3_Sulf_1_
dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1): DHex(2) Hex(4) HexA HexNAc(3) Sulf.
Definition: cv.hpp:12352
UNIMOD_Biotin_Thermo_33033
Biotin:Thermo-33033: Sulfo-SBED Label Photoreactive Biotin Crosslinker.
Definition: cv.hpp:11065
MS_ProteomeDiscoverer_perform_deisotoping
ProteomeDiscoverer:perform deisotoping: Defines whether a simple deisotoping shall be performed...
Definition: cv.hpp:7276
UNIMOD_Oxidation
Oxidation: Oxidation or Hydroxylation.
Definition: cv.hpp:8500
MS_mzidLib_Csv2Mzid
mzidLib:Csv2Mzid: A converter for CSV files (following OMSSA CSV style) to mzIdentML.
Definition: cv.hpp:7009
MS_MapAligner_OBSOLETE
MapAligner: Corrects retention time distortions between maps.
Definition: cv.hpp:2797
MS_autoflex_III_TOF_TOF_smartbeam
autoflex III TOF/TOF smartbeam: Bruker Daltonics&#39; autoflex III TOF/TOF smartbeam: MALDI TOF...
Definition: cv.hpp:4903
MS_sample_plate_type
sample plate type: The sample plate type.
Definition: cv.hpp:6076
MS_MaxQuant_sequence_length
MaxQuant:sequence length: The data type sequence length produced by MaxQuant.
Definition: cv.hpp:5956
MS_isolation_window_upper_offset
isolation window upper offset: The extent of the isolation window in m/z above the isolation window t...
Definition: cv.hpp:3034
UO_kilovolt_hour
kilovolt-hour: A magnetic flux unit which is equal to one thousand volt-hours.
Definition: cv.hpp:13180
MS_SEQUEST_LimitTo
SEQUEST:LimitTo: Specify "number of dtas shown" as value of the CVParam.
Definition: cv.hpp:3463
MS_protein_group_level_FDRScore
protein group-level FDRScore: mzidLibrary FDRScore for protein groups.
Definition: cv.hpp:7414
MS_lowest_observed_m_z
lowest observed m/z: Lowest m/z value observed in the m/z array.
Definition: cv.hpp:2038
MS_iTRAQ_quantitation_analysis
iTRAQ quantitation analysis: Quantification analysis using the SCIEX iTRAQ isobaric labelling workflo...
Definition: cv.hpp:5767
MS_database_type_nucleotide
database type nucleotide: Database contains nucleic acid sequences.
Definition: cv.hpp:3544
MS_peak_intensity_OBSOLETE
peak intensity: The height or area of a peak in a mass spectrum.
Definition: cv.hpp:943
MS_distinct_peptide_level_combined_FDRScore
distinct peptide-level combined FDRScore: Combined FDRScore for peptides once redundant identificatio...
Definition: cv.hpp:7375
UNIMOD_CLIP_TRAQ_2
CLIP_TRAQ_2: CLIP_TRAQ_2.
Definition: cv.hpp:9412
UNIMOD_MDCC
MDCC: Covalent linkage of maleimidyl coumarin probe (Molecular Probes D-10253).
Definition: cv.hpp:10105
UNIMOD_Asp__Gln
Asp->Gln: Asp->Gln substitution.
Definition: cv.hpp:10534
MS_delta_M
delta M: The difference between a theoretically calculated molecular mass M and the corresponding exp...
Definition: cv.hpp:6196
UNIMOD_Dansyl
Dansyl: 5-dimethylaminonaphthalene-1-sulfonyl.
Definition: cv.hpp:8692
UO_time_unit
time unit: A unit which is a standard measure of the dimension in which events occur in sequence...
Definition: cv.hpp:12505
MS_SEQUEST_sort_by_P
SEQUEST:sort by P: Sort order of SEQUEST search results given by the probability. ...
Definition: cv.hpp:3484
MS_electrospray_ionization
electrospray ionization: A process in which ionized species in the gas phase are produced from an ana...
Definition: cv.hpp:346
MS_ProteomeDiscoverer_1__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:1. Dynamic Modification: ProteomeDiscoverer&#39;s 1st dynamic post-translational modif...
Definition: cv.hpp:5416
MS_6210_Time_of_Flight_LC_MS
6210 Time-of-Flight LC/MS: The 6210 Time-of-Flight LC/MS is a Agilent liquid chromatography instrumen...
Definition: cv.hpp:1861
MS_quality_estimation_with_implicite_decoy_sequences
quality estimation with implicite decoy sequences: Decoy entries are generated during the search...
Definition: cv.hpp:4603
UNIMOD_lapachenole
lapachenole: Lapachenole photochemically added to cysteine.
Definition: cv.hpp:9988
UNIMOD_Delta_H_8_C_6_O_2_
Delta:H(8)C(6)O(2): Acrolein addition +112.
Definition: cv.hpp:8830
MS_sequence_same_set_protein
sequence same-set protein: A protein which is indistinguishable or equivalent to another protein...
Definition: cv.hpp:5038
MS_second_OBSOLETE
second: Acquisition time in seconds.
Definition: cv.hpp:220
UNIMOD_Phe__Trp
Phe->Trp: Phe->Trp substitution.
Definition: cv.hpp:10621
MS_PSM_level_result_list_attribute
PSM-level result list attribute: General property of the list of all PSMs.
Definition: cv.hpp:8398
UNIMOD_Label_13C_2_15N_2_
Label:13C(2)15N(2): 13C(2) 15N(2).
Definition: cv.hpp:12469
MS_suspension
suspension: State if the sample is in suspension form.
Definition: cv.hpp:271
UNIMOD_HexNAc
HexNAc: N-Acetylhexosamine.
Definition: cv.hpp:8521
UNIMOD_AHA_Alkyne
AHA-Alkyne: Azidohomoalanine (AHA) bound to propargylglycine-NH2 (alkyne).
Definition: cv.hpp:10339
MS_error_on_peptide_ratio
error on peptide ratio: Error on peptide ratio.
Definition: cv.hpp:3706
UNIMOD_His__Met
His->Met: His->Met substitution.
Definition: cv.hpp:10672
MS_experimental_condition__case_
experimental condition &#39;case&#39;: The experimental condition is &#39;case&#39; in contrast to &#39;control&#39;...
Definition: cv.hpp:5686
MS_ProteomeDiscoverer_2__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:2. Dynamic Modification: ProteomeDiscoverer&#39;s 2nd dynamic post-translational modif...
Definition: cv.hpp:5419
MS_resolution_array
resolution array: A data array of resolution values.
Definition: cv.hpp:7882
UO_microliter
microliter: A volume unit which is equal to one millionth of a liter or 10^[-6] L.
Definition: cv.hpp:12799
MS_error_on_protein_ratio
error on protein ratio: Error on protein ratio.
Definition: cv.hpp:3712
MS_negative_ion_mode_OBSOLETE
negative ion mode: OBSOLETE.
Definition: cv.hpp:364
UNIMOD_Bromobimane
Bromobimane: Monobromobimane derivative.
Definition: cv.hpp:8953
MS_DSQ_II
DSQ II: Thermo Scientific DSQ II GC-MS.
Definition: cv.hpp:2443
MS_sector_mass_spectrometer_OBSOLETE
sector mass spectrometer: A mass spectrometer consisting of one or more magnetic sectors for m/z sele...
Definition: cv.hpp:1312
MS_result_list_attribute
result list attribute: General property of an entire result list.
Definition: cv.hpp:8395
UO_nanomolal
nanomolal: A molality unit which is equal to one thousandth of one millionth of a molal or 10^[-9] m...
Definition: cv.hpp:12709
UNIMOD_Hex_4_HexNAc_5_Sulf_1_
Hex(4)HexNAc(5)Sulf(1): Hex(4) HexNAc(5) Sulf.
Definition: cv.hpp:11683
UO_megavolt
megavolt: An electric potential difference unit which is equal to one million volts or 10^[6] V...
Definition: cv.hpp:13246
UNIMOD_Arg__Cys
Arg->Cys: Arg->Cys substitution.
Definition: cv.hpp:9742
MS_smoothing
smoothing: A process of reducing spikes of intensity in order to reduce noise while preserving real p...
Definition: cv.hpp:2275
MS_TMT_quantitation_analysis
TMT quantitation analysis: Quantitation analysis using the Thermo Fisher tandem mass tag (TMT) labell...
Definition: cv.hpp:6313
UNIMOD_NEM_2H_5_
NEM:2H(5): D5 N-ethylmaleimide on cysteines.
Definition: cv.hpp:10003
UNIMOD_Label_13C_1_2H_3_
Label:13C(1)2H(3): SILAC.
Definition: cv.hpp:10078
MS_marginally_distinguished_protein
marginally distinguished protein: Assigned to a non-leading protein that has some independent evidenc...
Definition: cv.hpp:7519
MS_MS2_tag_based_feature_level_quantitation
MS2 tag-based feature level quantitation: MS2 tag-based feature level quantitation.
Definition: cv.hpp:6358
MS_REMPI
REMPI (resonance enhanced multiphoton ionization): Multiphoton ionization in which the ionization cro...
Definition: cv.hpp:1204
MS_no_peptide_level_threshold
no peptide-level threshold: Indicating that no peptide-level threshold was used.
Definition: cv.hpp:7798
MS_EMR_radiation_chromatogram
EMR radiation chromatogram (electromagnetic radiation chromatogram): The measurement of electromagnet...
Definition: cv.hpp:2980
MS_retention_time_window_attribute
retention time window attribute: An attribute of a window in time about which a peptide might elute f...
Definition: cv.hpp:3301
MS_OMSSA_xml_format
OMSSA xml format: Source file for this mzIdentML was in OMSSA xml file format.
Definition: cv.hpp:4450
MS_native_spectrum_identifier_format
native spectrum identifier format: Describes how the native spectrum identifiers are formated...
Definition: cv.hpp:2818
MS_TOPP_FeatureFinderMRM
TOPP FeatureFinderMRM: Quantifies features LC-MS/MS MRM data.
Definition: cv.hpp:6799
MS_ProteomeXchange_accession_number_version_number
ProteomeXchange accession number version number: Version number of a ProteomeXchange accession number...
Definition: cv.hpp:6022
MS_PIA_protein_inference_filter
PIA:protein inference filter: A filter used by PIA for the protein inference.
Definition: cv.hpp:7480
UO_nanogram_per_milliliter
nanogram per milliliter: A mass unit density which is equal to mass of an object in nanograms divided...
Definition: cv.hpp:13315
UNIMOD_Gln__Ala
Gln->Ala: Gln->Ala substitution.
Definition: cv.hpp:10843
MS_blackbody_infrared_radiative_dissociation
blackbody infrared radiative dissociation: A special case of infrared multiphoton dissociation wherei...
Definition: cv.hpp:994
UNIMOD_Val__Tyr
Val->Tyr: Val->Tyr substitution.
Definition: cv.hpp:10981
MS_HCTplus
HCTplus: Bruker Daltonics&#39; HCTplus: ESI Q-TOF, Nanospray, APCI, APPI.
Definition: cv.hpp:691
MS_TOPP_PrecursorMassCorrector
TOPP PrecursorMassCorrector: Correct the precursor entries of tandem MS scans.
Definition: cv.hpp:6769
MS_Spark_Source_Mass_Spectrometry_OBSOLETE
Spark Source Mass Spectrometry: Mass spectrometry using spark ionization.
Definition: cv.hpp:1243
MS_inlet_type
inlet type: The nature of the sample inlet.
Definition: cv.hpp:121
MS_DIP
DIP (direct insertion probe): A device for introducing a solid or liquid sample into a mass spectrome...
Definition: cv.hpp:1033
MS_Bruker_Daltonics_maXis_series
Bruker Daltonics maXis series: Bruker Daltonics&#39; maXis series.
Definition: cv.hpp:4888
MS_e_2_mass_spectrum
e/2 mass spectrum: A mass spectrum obtained using a sector mass spectrometer in which the electric se...
Definition: cv.hpp:1402
UNIMOD_HexNAc_1_NeuGc_1_
HexNAc(1)NeuGc(1): HexNAc NeuGc.
Definition: cv.hpp:11449
UNIMOD_Xle__Tyr
Xle->Tyr: Leu/Ile->Tyr substitution.
Definition: cv.hpp:10702
UNIMOD_dHex_1_Hex_4_HexA_1_HexNAc_2_
dHex(1)Hex(4)HexA(1)HexNAc(2): DHex Hex(4) HexA HexNAc(2).
Definition: cv.hpp:12193
MS_MD_Score_threshold
MD-Score threshold: Threshold for MD-score PTM site location score.
Definition: cv.hpp:7969
MS_ProteomeDiscoverer_Spectrum_Selector_Upper_RT_Limit
ProteomeDiscoverer:Spectrum Selector:Upper RT Limit: Upper retention-time limit.
Definition: cv.hpp:5119
MS_TOPP_IDFileConverter
TOPP IDFileConverter: Converts identification engine file formats.
Definition: cv.hpp:6757
MS_sample_concentration
sample concentration: Concentration of sample in picomol/ul, femtomol/ul or attomol/ul solution used...
Definition: cv.hpp:118
UNIMOD_Asn__Xle
Asn->Xle: Asn->Leu/Ile substitution.
Definition: cv.hpp:9676
MS_number_of_distinct_protein_sequences
number of distinct protein sequences: The number of protein clusters that have been identified...
Definition: cv.hpp:7516
UNIMOD_dHex_2_Hex_2_HexNAc_2_NeuAc_1_Sulf_1_
dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1): DHex(2) Hex(2) HexNAc(2) NeuAc Sulf.
Definition: cv.hpp:12205
MS_TRIZAIC_UPLC_nanoTile
TRIZAIC UPLC nanoTile: Waters LC-system TRIZAIC UPLC nanoTile.
Definition: cv.hpp:5563
MS_X_Tandem_xml_format
X!Tandem xml format: Source file for this mzIdentML was in X!Tandem xml file format.
Definition: cv.hpp:4453
MS_vendor_OBSOLETE
vendor: Name of instrument vendor.
Definition: cv.hpp:193
MS_unspecific_cleavage
unspecific cleavage: Unspecific cleavage.
Definition: cv.hpp:6133
UNIMOD_Myristoleyl
Myristoleyl: (cis-delta 5)-tetradecaenoyl.
Definition: cv.hpp:8680
UNIMOD_Tyr__Asn
Tyr->Asn: Tyr->Asn substitution.
Definition: cv.hpp:9850
UNIMOD_Delta_H_4_C_2_O__1_S_1_
Delta:H(4)C(2)O(-1)S(1): S-Ethylcystine from Serine.
Definition: cv.hpp:9010
MS_ProteinExtractor_UseProteinSolver
ProteinExtractor:UseProteinSolver: Flag indicating to include ProteinSolver scoring for calculation o...
Definition: cv.hpp:4558
MS_MultiQuant
MultiQuant: Applied Biosystems|MDS SCIEX software for MRM-based quantitation.
Definition: cv.hpp:2539
MS_field_desorption
field desorption: The formation of gas-phase ions from a material deposited on a solid surface in the...
Definition: cv.hpp:1084
UNIMOD_HNE_Delta_H_2_
HNE+Delta:H(2): Reduced 4-Hydroxynonenal.
Definition: cv.hpp:9025
MS_metabolic_labelling__heavy_N__mainly_15N_
metabolic labelling: heavy N (mainly 15N): Metabolic labelling: heavy N (mainly 15N).
Definition: cv.hpp:6496
UNIMOD_dHex_3_Hex_2_HexNAc_2_
dHex(3)Hex(2)HexNAc(2): DHex(3) Hex(2) HexNAc(2).
Definition: cv.hpp:12085
MS_pressure_array
pressure array: A data array of pressure measurements.
Definition: cv.hpp:3010
MS_open_split
open split: A division of flowing stream of liquid into two streams.
Definition: cv.hpp:313
MS_ProteomeDiscoverer_Spectrum_Selector_Minimum_Peak_Count
ProteomeDiscoverer:Spectrum Selector:Minimum Peak Count: Minimum number of peaks in a tandem mass spe...
Definition: cv.hpp:5083
MS_product_ion_series_ordinal
product ion series ordinal: The ordinal of the fragment within a specified ion series. (e.g. 8 for a y8 ion).
Definition: cv.hpp:3262
MS_CLINPROT_robot
CLINPROT robot: Bruker CLINPROT robot software.
Definition: cv.hpp:2647
MS_4000_Series_Explorer_Software
4000 Series Explorer Software: SCIEX or Applied Biosystems software for data acquisition and analysis...
Definition: cv.hpp:2497
UNIMOD_FNEM
FNEM: Fluorescein-5-maleimide.
Definition: cv.hpp:9394
MS_Thermo_Finnigan_instrument_model
Thermo Finnigan instrument model: ThermoFinnigan from Thermo Electron Corporation instrument model...
Definition: cv.hpp:553
UNIMOD_Arg__Pro
Arg->Pro: Arg->Pro substitution.
Definition: cv.hpp:9727
MS_AXIMA_CFR_plus
AXIMA-CFR plus: Shimadzu Biotech AXIMA-CFR plus MS.
Definition: cv.hpp:2335
MS_consensus_scoring
consensus scoring: Consensus multiple search engine approach performed.
Definition: cv.hpp:7768
MS_small_molecule_list_attribute
small molecule list attribute: Attribute describing a small molecule list.
Definition: cv.hpp:6640
MS_ProteinExtractor_MascotUseIdentityScore
ProteinExtractor:MascotUseIdentityScore:
Definition: cv.hpp:4540
MS_SEQUEST_selectCV
SEQUEST:selectCV: SEQUEST Select Input Parameters.
Definition: cv.hpp:3691
MS_CRF_OBSOLETE
CRF (charge-remote fragmentation): A fragmentation of an even-electron ion in which the cleaved bond ...
Definition: cv.hpp:1003
MS_TSQ_Quantum_Access
TSQ Quantum Access: Thermo Scientific TSQ Quantum Access MS.
Definition: cv.hpp:2452
UNIMOD_Hex_5_HexNAc_3_Pent_1_
Hex(5)HexNAc(3)Pent(1): Hex(5) HexNAc(3) Pent.
Definition: cv.hpp:11590
UNIMOD_dHex_1_Hex_3_HexA_1_HexNAc_1_Sulf_1_
dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1): DHex Hex(3) HexA HexNAc Sulf.
Definition: cv.hpp:12043
MS_journal_article_keyword
journal article keyword: Keyword present in a scientific publication.
Definition: cv.hpp:6034
MS_database_sequence_details
database sequence details: Details about a single database sequence.
Definition: cv.hpp:4276
MS_transition_validation_attribute
transition validation attribute: Attributes of the quality of a transition that affect its selection ...
Definition: cv.hpp:5902
UNIMOD_Thr__Lys
Thr->Lys: Thr->Lys substitution.
Definition: cv.hpp:9793
MS_study_variable_attribute
study variable attribute: Attribute describing a study variable.
Definition: cv.hpp:5677
MS_raw_file_attribute
raw file attribute: Attribute describing a raw file.
Definition: cv.hpp:5707
MS_predicted_retention_time
predicted retention time: A time interval from the start of chromatography when an analyte exits a ch...
Definition: cv.hpp:3244
MS_CI
CI (chemical ionization): The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:337
UNIMOD_Lys__Ser
Lys->Ser: Lys->Ser substitution.
Definition: cv.hpp:10726
MS_TOF_Total_Path_Length
TOF Total Path Length: The length of the field free drift space in a time of flight mass spectrometer...
Definition: cv.hpp:166
UNIMOD_MolybdopterinGD
MolybdopterinGD: Molybdenum bis(molybdopterin guanine dinucleotide).
Definition: cv.hpp:9235
MS_param__d_ion
param: d ion: Parameter information, type of product: side chain loss d ion.
Definition: cv.hpp:4048
MS_laser
laser: Device that emits light (electromagnetic radiation) through a process called stimulated emissi...
Definition: cv.hpp:3064
MS_TOPP_SpectraFilterNLargest
TOPP SpectraFilterNLargest: Retains the n largest peaks of a peak spectra.
Definition: cv.hpp:6709
MS_ProteinExtractor_MascotUniqueScore
ProteinExtractor:MascotUniqueScore: In the final result each protein must have at least one peptide a...
Definition: cv.hpp:4537
MS_decreasing_m_z_scan
decreasing m/z scan: High to low direction in terms of m/z of the scan for scanning analyzers...
Definition: cv.hpp:430
MS_Q_Exactive_Plus
Q Exactive Plus: Thermo Scientific Q Exactive Plus.
Definition: cv.hpp:8200
MS_experimental_condition__control_
experimental condition &#39;control&#39;: The experimental condition is &#39;control&#39; in contrast to &#39;case&#39;...
Definition: cv.hpp:5689
MS_taxonomy__scientific_name
taxonomy: scientific name: This term is used if a scientific name is specified, e.g. Homo sapiens. Recommend using MS:1001467 (taxonomy: NCBI TaxID) where possible.
Definition: cv.hpp:4645
MS_msmsEval_quality
msmsEval quality: This term reports the quality of the spectrum assigned by msmsEval.
Definition: cv.hpp:4324
MS_TRITON
TRITON: ThermoFinnigan TRITON MS.
Definition: cv.hpp:802
MS_Mascot_use_MudPIT_scoring_OBSOLETE
Mascot:use MudPIT scoring: Determines whether to use MudPIT or normal scoring.
Definition: cv.hpp:5257
MS_peptide_sequence_level_identification_statistic
peptide sequence-level identification statistic: Identification confidence metric for a peptide...
Definition: cv.hpp:3583
UO_nmole_disk
nmole/disk: A unit which is equal to one nanomole per disk, where a disk is some physical surface/con...
Definition: cv.hpp:13324
MS_spectrum_sub_set_protein
spectrum sub-set protein: A protein with a sub-set of the matched spectra for another protein...
Definition: cv.hpp:5047
MS_PSM_level_q_value
PSM-level q-value: Estimation of the q-value for peptide spectrum matches.
Definition: cv.hpp:7354
UNIMOD_NHS_fluorescein
NHS-fluorescein: Fluorescein-hexanoate-NHS hydrolysis.
Definition: cv.hpp:11344
UNIMOD_NEIAA_2H_5_
NEIAA:2H(5): N-ethyl iodoacetamide-d5.
Definition: cv.hpp:8836
MS_Conversion_to_mzML
Conversion to mzML: Conversion of a file format to Proteomics Standards Initiative mzML file format...
Definition: cv.hpp:2089
MS_ProteoWizard_msaccess
ProteoWizard msaccess: Filters, processes, and displays mass spectrometry data in a variety of ways...
Definition: cv.hpp:6913
UNIMOD_dHex_2_HexNAc_2_Kdn_1_
dHex(2)HexNAc(2)Kdn(1): DHex(2) HexNAc(2) Kdn.
Definition: cv.hpp:11965
MS_fragment_mass_type_average
fragment mass type average: Mass type setting for fragment mass was average isotopic.
Definition: cv.hpp:4039
MS_Microsoft_Excel
Microsoft Excel: Microsoft Excel (can be used for spectral counting).
Definition: cv.hpp:6469
MS_TSQ_7000
TSQ 7000: ThermoFinnigan TSQ 7000 MS.
Definition: cv.hpp:2764
MS_quantification_file_format
quantification file format: File format containing quantification results.
Definition: cv.hpp:6514
UNIMOD_dHex_2_Hex_3_HexNAc_5_
dHex(2)Hex(3)HexNAc(5): DHex(2) Hex(3) HexNAc(5).
Definition: cv.hpp:12346
MS_command_line_parameters
command-line parameters: Parameters string passed to a command-line interface software application...
Definition: cv.hpp:5911
MS_MaxQuant
MaxQuant: MaxQuant is a quantitative proteomics software package designed for analyzing large mass sp...
Definition: cv.hpp:4993
MS_magnetic_deflection
magnetic deflection: The deflection of charged particles in a magnetic field due to a force equal to ...
Definition: cv.hpp:904
UNIMOD_Deamidated_18O_1_
Deamidated:18O(1): Deamidation in presence of O18.
Definition: cv.hpp:9091
UNIMOD_dHex_1_Hex_5_HexNAc_3_
dHex(1)Hex(5)HexNAc(3): DHex Hex(5) HexNAc(3).
Definition: cv.hpp:11596
UNIMOD_dHex_2_Hex_2_
dHex(2)Hex(2): Hex2 dHex2.
Definition: cv.hpp:11479
UNIMOD_Hex_2_HexNAc_1_Me_1_
Hex(2)HexNAc(1)Me(1): Hex(2) HexNAc Me.
Definition: cv.hpp:11464
MS______D_______D__
((?<=D))|((?=D)): Regular expression for formic acid.
Definition: cv.hpp:4252
MS_SEQUEST_sort_by_Scan
SEQUEST:sort by Scan: Sort order of SEQUEST search results given by the scan number.
Definition: cv.hpp:3532
UNIMOD_Glu__Gly
Glu->Gly: Glu->Gly substitution.
Definition: cv.hpp:9526
MS_WARP_LC
WARP-LC: Bruker WARP-LC software.
Definition: cv.hpp:2734
MS_low_intensity_threshold
low intensity threshold: Threshold below which some action is taken.
Definition: cv.hpp:2407
MS_decoy_DB_derived_from_OBSOLETE
decoy DB derived from: The name of the database, the search database was derived from.
Definition: cv.hpp:4102
MS_standard
standard: Something, such as a practice or a product, that is widely recognized or employed...
Definition: cv.hpp:3247
UNIMOD_Hex_4_HexNAc_4_NeuAc_1_Sulf_2_
Hex(4)HexNAc(4)NeuAc(1)Sulf(2): Hex(4) HexNAc(4) NeuAc Sulf(2).
Definition: cv.hpp:12376
MS_2_iodobenzoate
2-iodobenzoate: Chemical iodobenzoate. Cleaves after W.
Definition: cv.hpp:6016
UNIMOD_Asn__Trp
Asn->Trp: Asn->Trp substitution.
Definition: cv.hpp:10807
UNIMOD_dHex_1_Hex_4_HexNAc_4_Pent_1_
dHex(1)Hex(4)HexNAc(4)Pent(1): DHex Hex(4) HexNAc(4) Pent.
Definition: cv.hpp:11680
MS_API_150EX_Prep
API 150EX Prep: Applied Biosystems/MDS SCIEX API 150EX Prep MS.
Definition: cv.hpp:640
UNIMOD_Galactosyl
Galactosyl: Gluconoylation.
Definition: cv.hpp:10159
MS_peptide_sequence_level_global_FNR
peptide sequence-level global FNR: Estimation of the global false negative rate for distinct peptides...
Definition: cv.hpp:7678
MS_FD
FD (field desorption): The formation of gas-phase ions from a material deposited on a solid surface i...
Definition: cv.hpp:1087
UNIMOD_Methylmalonylation
Methylmalonylation: Methylmalonylation on Serine.
Definition: cv.hpp:10174
MS_Q_Tof_micro
Q-Tof micro: Waters oa-ToF based Q-Tof micro.
Definition: cv.hpp:772
MS_full_spectrum
full spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stag...
Definition: cv.hpp:2200
UNIMOD_dHex_1_Hex_6_HexNAc_3_Sulf_1_
dHex(1)Hex(6)HexNAc(3)Sulf(1): DHex Hex(6) HexNAc(3) Sulf.
Definition: cv.hpp:11698
MS_photoionization
photoionization: The ionization of an atom or molecule by a photon, written M + h? ? M^+ + e. The term photon impact is not recommended.
Definition: cv.hpp:1183
UNIMOD_Glycosyl
Glycosyl: Glycosyl-L-hydroxyproline.
Definition: cv.hpp:9190
UO_count_unit
count unit: A dimensionless unit which denotes a simple count of things.
Definition: cv.hpp:13057
MS_Triple_Quad_4500
Triple Quad 4500: SCIEX Triple Quad 4500.
Definition: cv.hpp:8071
MS_6510_Quadrupole_Time_of_Flight_LC_MS
6510 Quadrupole Time-of-Flight LC/MS: The 6510 Quadrupole Time-of-Flight LC/MS is a Agilent liquid ch...
Definition: cv.hpp:2545
UNIMOD_DiLeu4plex117
DiLeu4plex117: Accurate mass for DiLeu 117 isobaric tag.
Definition: cv.hpp:11221
UNIMOD_Arg__Val
Arg->Val: Arg->Val substitution.
Definition: cv.hpp:10891
MS______KR__
(?<=[KR]): Regular expression for Trypsin/P.
Definition: cv.hpp:4267
UO_absorbed_dose_unit
absorbed dose unit: A unit which is a standard measure of the energy imparted by ionizing radiation t...
Definition: cv.hpp:12880
MS_synchronous_prefilter_selection
synchronous prefilter selection: Synchronous prefilter selection.
Definition: cv.hpp:7876
MS_PIA_filter
PIA:filter: A filter used for the report generation.
Definition: cv.hpp:7492
MS_SEQUEST_SelectAdvancedCV
SEQUEST:SelectAdvancedCV: SEQUEST Select Advanced Input Parameters.
Definition: cv.hpp:3742
MS_Agilent_MassHunter_nativeID_format
Agilent MassHunter nativeID format: Native format defined by scanId=xsd:nonNegativeInteger.
Definition: cv.hpp:4771
MS_parent_mass_type_average
parent mass type average: Mass type setting for parent mass was average isotopic. ...
Definition: cv.hpp:3913
MS_SIC_chromatogram
SIC chromatogram (selected ion current chromatogram): Chromatogram created by creating an array of th...
Definition: cv.hpp:2401
MS_MyriMatch_MVH
MyriMatch:MVH: Using the multivariate hypergeometric distribution and a peak list divided into severa...
Definition: cv.hpp:5011
MS_ProteomeDiscoverer_SEQUEST_Std_High_Confidence_XCorr_Charge4
ProteomeDiscoverer:SEQUEST:Std High Confidence XCorr Charge4: Standard high confidence XCorr paramete...
Definition: cv.hpp:5377
MS_NoEnzyme_OBSOLETE
NoEnzyme:
Definition: cv.hpp:3580
UNIMOD_Arg__Orn
Arg->Orn: Ornithine from Arginine.
Definition: cv.hpp:9103
MS_LTQ_Velos_ETD
LTQ Velos ETD: Thermo Scientific LTQ Velos MS with ETD.
Definition: cv.hpp:3112
UNIMOD_Cysteinyl
Cysteinyl: Cysteinylation.
Definition: cv.hpp:8980
UNIMOD_SPITC_13C_6_
SPITC:13C(6): 4-sulfophenyl isothiocyanate (Heavy C13).
Definition: cv.hpp:9325
UNIMOD_MM_diphenylpentanone
MM-diphenylpentanone: 3-methyl-5-(methylamino)-1,3-diphenylpentan-1-one.
Definition: cv.hpp:11206
UNIMOD_dHex_2_Hex_3_HexNAc_2_NeuGc_1_
dHex(2)Hex(3)HexNAc(2)NeuGc(1): DHex(2) Hex(3) HexNAc(2) NeuGc.
Definition: cv.hpp:12259
MS_ProteomeDiscoverer_Reporter_Ions_Quantizer_Integration_Method
ProteomeDiscoverer:Reporter Ions Quantizer:Integration Method: Specifies which peak to select if more...
Definition: cv.hpp:5350
MS_LTQ_Orbitrap_Discovery
LTQ Orbitrap Discovery: LTQ Orbitrap Discovery.
Definition: cv.hpp:2122
MS_modification_rescoring_false_localization_rate
modification rescoring:false localization rate: Mod position score: false localization rate...
Definition: cv.hpp:7813
MS_peak_picking
peak picking: Spectral peak processing conducted on the acquired data to convert profile data to cent...
Definition: cv.hpp:208
MS_spectra_data_details
spectra data details: Child-terms contain information to map the results back to spectra.
Definition: cv.hpp:4834
MS_ProteomeDiscoverer_Number_of_input5_spectra
ProteomeDiscoverer:Number of input5 spectra: Number of spectra from 5+ precursor ions.
Definition: cv.hpp:5452
MS_solid_state_laser
solid-state laser: Solid state laser materials are commonly made by doping a crystalline solid host w...
Definition: cv.hpp:3097
UNIMOD_dHex_4_Hex_1_HexNAc_1_Kdn_2_
dHex(4)Hex(1)HexNAc(1)Kdn(2): DHex(4) Hex HexNAc Kdn(2).
Definition: cv.hpp:12235
MS_MD5
MD5: MD5 (Message-Digest algorithm 5) is a cryptographic hash function with a 128-bit hash value used...
Definition: cv.hpp:2161
MS_peptide_sequence_level_result_list_attribute
peptide sequence-level result list attribute: General property of all peptide sequences in the list...
Definition: cv.hpp:8404
MS_intermediate_analysis_format
intermediate analysis format: Type of the source file, the mzIdentML was created from.
Definition: cv.hpp:3457
MS_MIKES_OBSOLETE
MIKES (mass analyzed ion kinetic energy spectrometry): Spectra that are obtained from a sector mass s...
Definition: cv.hpp:1150
UNIMOD_Hex_3_HexNAc_2_Phos_1_
Hex(3)HexNAc(2)Phos(1): Hex(3) HexNAc(2) Phos.
Definition: cv.hpp:8758
MS______HKR_P____P_
(?<=[HKR]P)(?!P): Regular expression for proline endopeptidase.
Definition: cv.hpp:6139
UNIMOD_QAT
QAT: APTA-d0.
Definition: cv.hpp:8800
MS_low_energy_collision_induced_dissociation
low-energy collision-induced dissociation: A collision-induced dissociation process wherein the precu...
Definition: cv.hpp:1723
UO_force_unit
force unit: A unit which is a standard measure of the force is applied when a mass is accelerated...
Definition: cv.hpp:12817
MS_ProteomeDiscoverer_use_flanking_ions
ProteomeDiscoverer:use flanking ions: Flag for usage of flanking ions.
Definition: cv.hpp:7270
UNIMOD_Biotin_Sigma_B1267
Biotin:Sigma-B1267: Was Biotin-maleimide.
Definition: cv.hpp:10324
MS_pulse_energy
pulse energy: Describes output energy of the laser system. May be attenuated by filters or other mean...
Definition: cv.hpp:3082
UNIMOD_Cation_Li
Cation:Li: Replacement of proton by lithium.
Definition: cv.hpp:10243
UNIMOD_Biotin_Cayman_10013
Biotin:Cayman-10013: Was PGA1-biotin.
Definition: cv.hpp:9451
MS_Chymotrypsin
Chymotrypsin: Enzyme chymotrypsin.
Definition: cv.hpp:4171
MS_cyclotron_motion_OBSOLETE
cyclotron motion: The circular motion of a charged particle moving at velocity v in a magnetic field ...
Definition: cv.hpp:1324
UO_century
century: A time unit which is equal to 100 years.
Definition: cv.hpp:12943
MS_multiple_reaction_monitoring_spectrum
multiple reaction monitoring spectrum (SRM spectrum): Spectrum obtained when data are acquired from s...
Definition: cv.hpp:2245
UO_cells_per_milliliter
cells per milliliter: A unit of cell concentration which is equal to one cell in a volume of 1 millil...
Definition: cv.hpp:13093
MS_peptide_unique_to_one_protein
peptide unique to one protein: A peptide matching only one.
Definition: cv.hpp:4339
UNIMOD_2_monomethylsuccinyl
2-monomethylsuccinyl: S-(2-monomethylsuccinyl) cysteine.
Definition: cv.hpp:11071
MS_Phenyx_Turbo_Coverage
Phenyx:Turbo:Coverage: The minimal peptide sequence coverage value, expressed in percent, considered in the turbo mode of Phenyx.
Definition: cv.hpp:4393
UNIMOD_Pyro_carbamidomethyl
Pyro-carbamidomethyl: S-carbamoylmethylcysteine cyclization (N-terminus).
Definition: cv.hpp:8479
UNIMOD_HNE_BAHAH
HNE-BAHAH: 4-hydroxy-2-nonenal and biotinamidohexanoic acid hydrazide, reduced.
Definition: cv.hpp:10171
UO_light_unit
light unit: A unit which is a standard measure of the intensity of light.
Definition: cv.hpp:12961
MS_IE_OBSOLETE
IE (ionization energy): The minimum energy required to remove an electron from an atom or molecule to...
Definition: cv.hpp:895
UNIMOD_DNPS
DNPS: 2,4-Dinitrobenzenesulfenyl.
Definition: cv.hpp:10219
MS_Q3_spectrum
Q3 spectrum (MS1 spectrum): Mass spectrum created by a single-stage MS experiment or the first stage ...
Definition: cv.hpp:2206
MS_decoy_peptide
decoy peptide: A putative identified peptide issued from a decoy sequence database.
Definition: cv.hpp:6940
MS_Progeny_Fragment_Ion_OBSOLETE
Progeny Fragment Ion (progeny ion): A charged product of a series of consecutive reactions that inclu...
Definition: cv.hpp:1453
MS_ProteomeDiscoverer_Protein_Database_OBSOLETE
ProteomeDiscoverer:Protein Database: Database to use in the search (configured on the Mascot server)...
Definition: cv.hpp:5239
UNIMOD_Lys__Ala
Lys->Ala: Lys->Ala substitution.
Definition: cv.hpp:10705
UNIMOD_dHex_3_Hex_3_HexNAc_4_Pent_1_
dHex(3)Hex(3)HexNAc(4)Pent(1): DHex(3) Hex(3) HexNAc(4) Pent.
Definition: cv.hpp:11743
MS_SCiLS_Lab_format
SCiLS Lab format: SCiLS Lab file format.
Definition: cv.hpp:7447
UO_katal_per_liter
katal per liter: A catalytic (activity) concentration unit which is equal to 1 katal activity of a ca...
Definition: cv.hpp:13102
MS_API_3200
API 3200: SCIEX or Applied Biosystems|MDS SCIEX API 3200 MS.
Definition: cv.hpp:2479
UNIMOD_Hydroxyheme
Hydroxyheme: Hydroxyheme.
Definition: cv.hpp:9265
UNIMOD_NA_LNO2
NA-LNO2: Nitroalkylation by Nitro Linoleic Acid.
Definition: cv.hpp:9865
MS_ProteinExtractor_ProteinSolverUniqueScore
ProteinExtractor:ProteinSolverUniqueScore: In the final result each protein must have at least one pe...
Definition: cv.hpp:4564
MS_transition_validated_with_an_MS_MS_spectrum_on_specified_instrument
transition validated with an MS/MS spectrum on specified instrument: The transition has been validate...
Definition: cv.hpp:3289
MS_Andi_CHROM_format
Andi-CHROM format: AIA Analytical Data Interchange file format for chromatography data...
Definition: cv.hpp:7621
MS_Byonic_Best_LogProb
Byonic:Best LogProb: Best (most negative) log p-value of an individual PSM.
Definition: cv.hpp:7093
MS_MRMaid_peptide_score
MRMaid:peptide score: Score in MRMaid to indicate the expected performance of the peptide in SRM...
Definition: cv.hpp:6952
UNIMOD_EDT_iodoacetyl_PEO_biotin
EDT-iodoacetyl-PEO-biotin: EDT-iodo-PEO-biotin.
Definition: cv.hpp:8644
MS_chemical_ionization
chemical ionization: The formation of a new ion by the reaction of a neutral species with an ion...
Definition: cv.hpp:334
UO_picoliter
picoliter: A volume unit which is equal to 10^[-12] L.
Definition: cv.hpp:12805
MS_Mascot_SigThreshold
Mascot:SigThreshold: Significance threshold below which the p-value of a peptide match must lie to be...
Definition: cv.hpp:4201
UNIMOD_Phe__Val
Phe->Val: Phe->Val substitution.
Definition: cv.hpp:9544
UO_colony_forming_unit_per_volume
colony forming unit per volume: A concentration unit which a measure of viable bacterial numbers in a...
Definition: cv.hpp:13126
MS_orbitrap
orbitrap: An ion trapping device that consists of an outer barrel-like electrode and a coaxial inner ...
Definition: cv.hpp:1900
MS_ProteomeDiscoverer_Precursor_Mass_Tolerance_OBSOLETE
ProteomeDiscoverer:Precursor Mass Tolerance: Mass window for which precursor ions are considered to b...
Definition: cv.hpp:5233
MS_chromosome_name
chromosome name: The name or number of the chromosome to which a given peptide has been mapped...
Definition: cv.hpp:8209
MS_impact_angle
impact angle: Describes the angle between the laser beam and the sample target.
Definition: cv.hpp:3091
UNIMOD_Tyr__Thr
Tyr->Thr: Tyr->Thr substitution.
Definition: cv.hpp:11047
MS_spectral_count_protein_level_quantitation
spectral count protein level quantitation: Spectral count protein level quantitation.
Definition: cv.hpp:6334
MS_ProteinExtractor_ProteinSolverWeighting
ProteinExtractor:ProteinSolverWeighting: Influence of ProteinSolver search engine in the process of m...
Definition: cv.hpp:4567
UNIMOD_Gln__Arg
Gln->Arg: Gln->Arg substitution.
Definition: cv.hpp:9712
UNIMOD_Piperidine
Piperidine: Piperidination.
Definition: cv.hpp:9403
MS_fragment_ion_OBSOLETE
fragment ion: A product ion that results from the dissociation of a precursor ion.
Definition: cv.hpp:1513
UNIMOD_Ser__Thr
Ser->Thr: Ser->Thr substitution.
Definition: cv.hpp:9760
MS_API_100
API 100: Applied Biosystems/MDS SCIEX API 100 MS.
Definition: cv.hpp:8050
MS_ProteinScape_PFFSolverExp
ProteinScape:PFFSolverExp: The ProteinSolver exp value stored by ProteinScape.
Definition: cv.hpp:4756
UO_kilogram_per_cubic_meter
kilogram per cubic meter: A mass unit density which is equal to mass of an object in kilograms divide...
Definition: cv.hpp:12745
MS_activation_energy
activation energy: Activation Energy.
Definition: cv.hpp:1981
MS_PD
PD (plasma desorption): The ionization of material in a solid sample by bombarding it with ionic or n...
Definition: cv.hpp:601
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition: cv.hpp:574
UNIMOD_Ala__Asn
Ala->Asn: Ala->Asn substitution.
Definition: cv.hpp:10465
MS_decoy_DB_generation_algorithm
decoy DB generation algorithm: Name of algorithm used for decoy generation.
Definition: cv.hpp:4594
MS_printed_MALDI_matrix_preparation
printed MALDI matrix preparation: Printed MALDI matrix preparation.
Definition: cv.hpp:3055
MS_exact_mass_OBSOLETE
exact mass: The calculated mass of an ion or molecule containing a single isotope of each atom...
Definition: cv.hpp:877
MS_TOPP_OpenSwath_component
TOPP OpenSwath component: OpenSwath component of the TOPP software.
Definition: cv.hpp:6880
MS_No_variable_modifications_searched
No variable modifications searched: No variable modifications are included as a parameter for the sea...
Definition: cv.hpp:7654
UNIMOD_His__Thr
His->Thr: His->Thr substitution.
Definition: cv.hpp:10678
MS_amaZon_ETD
amaZon ETD: Bruker Daltonics&#39; amaZon ETD: ESI quadrupole ion trap, Nanospray, APCI, APPI, ETD, PTR.
Definition: cv.hpp:4873
MS_constant_neutral_loss_spectrum
constant neutral loss spectrum: A spectrum formed of all product ions that have been produced with a ...
Definition: cv.hpp:1393
MS_ProteomeDiscoverer_Use_Neutral_Loss_y_Ions
ProteomeDiscoverer:Use Neutral Loss y Ions: Determines whether y ions with neutral loss are used for ...
Definition: cv.hpp:5314
MS_PIA_FDRScore_calculated
PIA:FDRScore calculated: Indicates whether the FDR score was calculated for the input file...
Definition: cv.hpp:7462
MS_4800_Proteomics_Analyzer
4800 Proteomics Analyzer: Applied Biosystems|MDS SCIEX 4800 Proteomics Analyzer.
Definition: cv.hpp:2494
MS_EVOQ_Qube
EVOQ Qube: Bruker Daltonics&#39; EVOQ Qube: LC-triple quadrupole.
Definition: cv.hpp:7186
MS_median_of_spectra
median of spectra: Spectra is combined by calculating the median of the spectra.
Definition: cv.hpp:2176
MS_Pro_BLAST
Pro BLAST: Applied Biosystems|MDS SCIEX software for MS-BLAST identification.
Definition: cv.hpp:2530
MS_Scaffold_nativeID_format
Scaffold nativeID format: Scaffold native ID format.
Definition: cv.hpp:4927
UNIMOD_Glu__Ser
Glu->Ser: Glu->Ser substitution.
Definition: cv.hpp:10573
MS_MarkerView_Software
MarkerView Software: Applied Biosystems|MDS SCIEX software for metabolomics and biomarker profiling...
Definition: cv.hpp:2512
UO_specific_volume_unit
specific volume unit: A unit which is a standard measure of the volume of a given mass of substance (...
Definition: cv.hpp:12673
MS_MALDI_Synapt_G2_MS
MALDI Synapt G2 MS: Waters oa-ToF based MALDI Synapt G2 MS.
Definition: cv.hpp:5572
MS_autoionization
autoionization: The formation of an ion when an atom or molecule in a discrete state with an energy g...
Definition: cv.hpp:1573
MS_iRT_retention_time_normalization_standard
iRT retention time normalization standard: A de facto standard providing the retention times at which...
Definition: cv.hpp:6289
UO_picovolt
picovolt: An electric potential difference unit which is equal to one trillionth of a volt or 10^[-12...
Definition: cv.hpp:13243
MS_Element_2
Element 2: Thermo Scientific Element 2 HR-ICP-MS.
Definition: cv.hpp:2458
UO_nanomolar
nanomolar: A unit of molarity which is equal to one thousandth of one millionth of a molar or 10^[-9]...
Definition: cv.hpp:12691
UNIMOD_Pro__Glu
Pro->Glu: Pro->Glu substitution.
Definition: cv.hpp:10816
MS_PeptideAtlas_dataset_URI
PeptideAtlas dataset URI: URI that allows access to a PeptideAtlas dataset.
Definition: cv.hpp:6382
MS_protonated_molecule_OBSOLETE
protonated molecule: An ion formed by interaction of a neutral molecule with a proton and represented...
Definition: cv.hpp:1546
UNIMOD_Label_13C_4_
Label:13C(4): 13C4 Methionine label.
Definition: cv.hpp:11104
MS_peptide_D_Score
peptide:D-Score: D-Score for PTM site location at the peptide-level.
Definition: cv.hpp:7954
MS_two_dimensional_gas_chromatography_with_discrete_modulation_time_steps
two-dimensional gas chromatography with discrete modulation time steps: Two-dimensional gas chromatog...
Definition: cv.hpp:6550
MS_baseline
baseline: An attribute of resolution when recording the detector response in absence of the analyte...
Definition: cv.hpp:406
MS_distonic_ion_OBSOLETE
distonic ion: A radical cation or anion in which the charge site and the unpaired electron spin canno...
Definition: cv.hpp:1507
PWIZ_API_DECL bool cvIsA(CVID child, CVID parent)
returns true iff child IsA parent in the CV
MS_protein_group_level_result_list_statistic
protein group-level result list statistic: Attrbiute of an entire list of protein groups...
Definition: cv.hpp:8416
MS_TOPP_software
TOPP software: TOPP (The OpenMS proteomics pipeline) software.
Definition: cv.hpp:2773
MS_MS_GFDB
MS-GFDB (MS-GF+): MS-GF+ software used to analyze the spectra.
Definition: cv.hpp:6436
MS_MaxQuant_MS_MS_count
MaxQuant:MS/MS count: The data type MS2 count produced by MaxQuant.
Definition: cv.hpp:5968
MS_detector_type
detector type: Type of detector used in the mass spectrometer.
Definition: cv.hpp:181
MS_peptide_start_on_chromosome_OBSOLETE
peptide start on chromosome: The overall start position on the chromosome to which a peptide has been...
Definition: cv.hpp:8215
UO_area_unit
area unit: A unit which is a standard measure of the amount of a 2-dimensional flat surface...
Definition: cv.hpp:12637
MS_DB_source_NCBI
DB source NCBI: Database source NCBI.
Definition: cv.hpp:4033
MS_HCD
HCD (beam-type collision-induced dissociation): A collision-induced dissociation process that occurs ...
Definition: cv.hpp:1690
MS_DBImporter
DBImporter: Imports data to an OpenMS database.
Definition: cv.hpp:2782
MS_Waters_instrument_model
Waters instrument model: Waters Corporation instrument model.
Definition: cv.hpp:556
MS_ProteomeDiscoverer_Number_of_predicted_correct_proteins
ProteomeDiscoverer:Number of predicted correct proteins: Total number of predicted correct protein id...
Definition: cv.hpp:5455
MS_3500_QTRAP
3500 QTRAP: SCIEX 3500 QTRAP.
Definition: cv.hpp:8032
MS_LECO_instrument_model
LECO instrument model: LECO instrument model.
Definition: cv.hpp:5656
MS_TMT_reagent_130
TMT reagent 130: The name of the sample labelled with the TMT reagent 130.
Definition: cv.hpp:8155
MS_Quattro_micro_GC
Quattro micro GC: Waters quadrupole based Quattro micro GC.
Definition: cv.hpp:5623
UNIMOD_Lys__Asn
Lys->Asn: Lys->Asn substitution.
Definition: cv.hpp:9598
UNIMOD_Trimethyl
Trimethyl: Tri-Methylation.
Definition: cv.hpp:8506
MS_electron_capture_dissociation
electron capture dissociation: A process in which a multiply protonated molecules interacts with a lo...
Definition: cv.hpp:1042
MS_supplemental_higher_energy_beam_type_collision_induced_dissociation
supplemental higher energy beam-type collision-induced dissociation: A supplemental collision-induced...
Definition: cv.hpp:8335
MS_PRIDE_XML
PRIDE XML: Internal data and submission format of the PRIDE database.
Definition: cv.hpp:8095
UNIMOD_Leu__MetOx
Leu->MetOx: Leu->Met substitution and sulfoxidation.
Definition: cv.hpp:10153
UNIMOD_Thr__Tyr
Thr->Tyr: Thr->Tyr substitution.
Definition: cv.hpp:10948
MS_PMT
PMT (photomultiplier): A detector for conversion of the ion/electron signal into photon(s) which are ...
Definition: cv.hpp:520
MS_ProteomeDiscoverer_3__Dynamic_Modification_OBSOLETE
ProteomeDiscoverer:3. Dynamic Modification: ProteomeDiscoverer&#39;s 3rd dynamic post-translational modif...
Definition: cv.hpp:5422
MS_pmf_search
pmf search: A peptide mass fingerprint search.
Definition: cv.hpp:3550
UNIMOD_Acetylhypusine
Acetylhypusine: Acetylhypusine.
Definition: cv.hpp:10444
UNIMOD_Xle__Met
Xle->Met: Leu/Ile->Met substitution.
Definition: cv.hpp:9637
MS_apex_Q
apex Q: Bruker Daltonics&#39; apex Q: ESI, MALDI, Nanospray, APCI, APPI, Qh-FT_ICR.
Definition: cv.hpp:634
MS_structural_formula
structural formula: A chemical formula showing the number of atoms of each element in a molecule...
Definition: cv.hpp:3151
MS_HCTultra_ETD_II
HCTultra ETD II: Bruker Daltonics&#39; HCTultra ETD II: ESI Q-TOF, Nanospray, APCI, APPI, ETD.
Definition: cv.hpp:2617
UNIMOD_Hex_8_HexNAc_1_
Hex(8)HexNAc(1): Hex(8) HexNAc.
Definition: cv.hpp:11563
UO_microliter_per_kilogram
microliter per kilogram: A specific volume unit which is equal to one millionth of a liter per kilogr...
Definition: cv.hpp:13087
UNIMOD_MG_H1
MG-H1: Methylglyoxal-derived hydroimidazolone.
Definition: cv.hpp:10069
MS_RGA_OBSOLETE
RGA (residual gas analyzer): A mass spectrometer used to measure the composition and pressure of gass...
Definition: cv.hpp:1210
MS_TOPP_PepNovoAdapter
TOPP PepNovoAdapter: Identifies MS2 spectra using the external program PepNovo.
Definition: cv.hpp:6844
MS_analyzer
analyzer (mass analyzer): Terms used to describe the Analyzer.
Definition: cv.hpp:1789
MS_inclusive_high_intensity_threshold
inclusive high intensity threshold: Threshold at or above which some action is taken.
Definition: cv.hpp:2899
MS_genome_reference_version
genome reference version: The reference genome and versioning string as used for mapping. All coordinates are within this frame of reference.
Definition: cv.hpp:8230
MS_SEQUEST_sort_by_TIC
SEQUEST:sort by TIC: Sort order of SEQUEST search results given by the total ion current.
Definition: cv.hpp:3529
UNIMOD_CHDH
CHDH: Cis-14-hydroxy-10,13-dioxo-7-heptadecenoic ester.
Definition: cv.hpp:9259
MS_scan_m_z_range__OBSOLETE
scan m/z range?: The limit of m/z over which a mass spectrometer can detect ions. ...
Definition: cv.hpp:1348
MS_ICPL_reagent
ICPL reagent: Isotope coded protein labeling reagent.
Definition: cv.hpp:8113
MS_QSTAR_Pulsar
QSTAR Pulsar: Applied Biosystems|MDS SCIEX QSTAR Pulsar.
Definition: cv.hpp:2488
MS_OBSOLETE_charge_number_OBSOLETE
OBSOLETE charge number: The total charge on an ion divided by the electron charge e...
Definition: cv.hpp:856
MS_6110_Quadrupole_LC_MS
6110 Quadrupole LC/MS: The 6110 Quadrupole LC/MS system is a Agilent liquid chromatography instrument...
Definition: cv.hpp:1849
MS_peptide_sequence_level_global_FDR
peptide sequence-level global FDR: Estimation of the global false discovery rate for distinct peptide...
Definition: cv.hpp:4342
MS_ProteomeDiscoverer_Lowest_Charge_State
ProteomeDiscoverer:Lowest Charge State: Minimum charge state below which peptides are filtered out...
Definition: cv.hpp:5179
MS_IT
IT (ion trap): A device for spatially confining ions using electric and magnetic fields alone or in c...
Definition: cv.hpp:1129
MS_PepsinA
PepsinA: PepsinA proteinase.
Definition: cv.hpp:4186
MS_SCIEX_TOF_TOF_T2D_nativeID_format
SCIEX TOF/TOF T2D nativeID format: Native format defined by file=xsd:IDREF.
Definition: cv.hpp:4918
MS_dimeric_ion_OBSOLETE
dimeric ion: An ion formed by ionization of a dimer or by the association of an ion with its neutral ...
Definition: cv.hpp:1504