ProteoWizard
Classes | Namespaces | Typedefs | Functions
TraData.hpp File Reference
#include "pwiz/utility/misc/Export.hpp"
#include "pwiz/data/common/cv.hpp"
#include "pwiz/data/common/ParamTypes.hpp"
#include <vector>
#include <string>

Go to the source code of this file.

Classes

struct  pwiz::tradata::Contact
 
struct  pwiz::tradata::Publication
 
struct  pwiz::tradata::Software
 
struct  pwiz::tradata::RetentionTime
 
struct  pwiz::tradata::Prediction
 Information about a prediction for a suitable transition using some software. More...
 
struct  pwiz::tradata::Evidence
 Information about empirical mass spectrometer observations of the peptide. More...
 
struct  pwiz::tradata::Validation
 Information about the state of validation of a transition on a given instrument model. More...
 
struct  pwiz::tradata::Instrument
 Instrument on which transitions are validated. More...
 
struct  pwiz::tradata::Configuration
 Instrument configuration used in the validation or optimization of the transitions. More...
 
struct  pwiz::tradata::Interpretation
 A possible interpration of the product ion for a transition. More...
 
struct  pwiz::tradata::Protein
 
struct  pwiz::tradata::Modification
 A molecule modification specification. More...
 
struct  pwiz::tradata::Peptide
 Peptide for which one or more transitions are intended to identify. More...
 
struct  pwiz::tradata::Compound
 Chemical compound other than a peptide for which one or more transitions. More...
 
struct  pwiz::tradata::Precursor
 Precursor (Q1) of the transition. More...
 
struct  pwiz::tradata::Product
 Product (Q3) of the transition. More...
 
struct  pwiz::tradata::Transition
 
struct  pwiz::tradata::Target
 A peptide or compound that is to be included or excluded from a target list of precursor m/z values. More...
 
struct  pwiz::tradata::TargetList
 List of precursor m/z targets to include or exclude. More...
 
struct  pwiz::tradata::TraData
 

Namespaces

 pwiz
 
 pwiz::tradata
 
 pwiz::tradata::IO
 

Typedefs

typedef boost::shared_ptr< Contact > pwiz::tradata::ContactPtr
 
typedef boost::shared_ptr< Software > pwiz::tradata::SoftwarePtr
 
typedef boost::shared_ptr< Instrument > pwiz::tradata::InstrumentPtr
 
typedef boost::shared_ptr< Protein > pwiz::tradata::ProteinPtr
 
typedef boost::shared_ptr< Peptide > pwiz::tradata::PeptidePtr
 
typedef boost::shared_ptr< Compound > pwiz::tradata::CompoundPtr
 
typedef boost::shared_ptr< TraData > pwiz::tradata::TraDataPtr
 

Functions

PWIZ_API_DECL std::vector< CV > pwiz::tradata::defaultCVList ()
 returns a default list of CVs used in an TraML document; currently includes PSI-MS, Unit Ontology, and UNIMOD More...