Here is a list of all class members with links to the classes they belong to:
- s -
- Same()
: pwiz::data::diff_impl::Same< object_type, config_type >
- SameDeep()
: pwiz::data::diff_impl::SameDeep< object_type, config_type >
- Sample()
: pwiz::identdata::Sample
- sample()
: pwiz::math::MatchedFilter::SampledData< space_type >
- Sample()
: pwiz::msdata::Sample
- sampled_data_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
- SampleDatum()
: pwiz::data::SampleDatum< abscissa_type, ordinate_type >
- sampleEnzyme
: pwiz::data::pepxml::MSMSRunSummary
- SampleEnzyme()
: pwiz::data::pepxml::SampleEnzyme
- sampleIndex()
: pwiz::math::MatchedFilter::SampledData< space_type >
- samplePtr
: pwiz::identdata::SpectrumIdentificationItem
, pwiz::msdata::Run
- samplePtrs
: pwiz::msdata::MSData
- samples
: pwiz::identdata::AnalysisSampleCollection
, pwiz::math::MatchedFilter::SampledData< space_type >
- samples_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
, pwiz::math::MatchedFilter::SampledData< space_type >
- SavitzkyGolaySmoother()
: pwiz::analysis::SavitzkyGolaySmoother
- saxstring()
: pwiz::minimxml::SAXParser::saxstring
- scale()
: pwiz::data::FrequencyData
- scalings
: pwiz::analysis::CwtPeakDetector
- Scan()
: pwiz::data::peakdata::Scan
, pwiz::identdata::Serializer_Text
- scan
: pwiz::util::MSIHandler::Record
- scanCount
: pwiz::util::MSIHandler::Record
- scanEvent
: pwiz::msdata::SpectrumInfo
- scanEventSet_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
- scanFirst
: pwiz::util::MSIHandler::Record
- scanLast
: pwiz::util::MSIHandler::Record
- scanList
: pwiz::msdata::Spectrum
- scanNumber()
: pwiz::data::FrequencyData
, pwiz::data::peakdata::Scan
, pwiz::msdata::SpectrumInfo
, TestSpectrumInfo
- scanNumberRange
: pwiz::analysis::RegionAnalyzer::Config
- scanNumbers
: pwiz::msdata::SpectrumIterator::Config
- scanNumberSet_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- scans
: pwiz::data::peakdata::PeakData
, pwiz::msdata::ScanList
- ScanSettings()
: pwiz::msdata::ScanSettings
- scanSettingsPtr
: pwiz::msdata::InstrumentConfiguration
- scanSettingsPtrs
: pwiz::msdata::MSData
- scanTimeHigh_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- scanTimeLow_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- ScanWindow()
: pwiz::msdata::ScanWindow
- scanWindows
: pwiz::msdata::Scan
- score
: pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::PeakFamily
, pwiz::data::pepxml::Match
- Score()
: pwiz::frequency::PeakDetectorMatchedFilter::Score
, pwiz::identdata::Serializer_Text
- ScoreType
: pwiz::identdata::DelimReader
, pwiz::identdata::Serializer_Text
- sd_peak_mz
: pwiz::analysis::RegionAnalyzer::Stats
- search_engine
: pwiz::analysis::PepxmlRecordReader
- search_id
: pwiz::data::pepxml::SearchSummary
- search_scores
: pwiz::analysis::PepxmlRecordReader::record
- SearchDatabase()
: pwiz::data::pepxml::SearchDatabase
- searchDatabase
: pwiz::data::pepxml::SearchSummary
, pwiz::identdata::Inputs
- SearchDatabase()
: pwiz::identdata::SearchDatabase
- searchDatabase
: pwiz::identdata::SpectrumIdentification
- searchDatabasePtr
: pwiz::identdata::DBSequence
- searchEngine
: pwiz::data::pepxml::SearchSummary
- SearchHit()
: pwiz::data::pepxml::SearchHit
- searchHit
: pwiz::data::pepxml::SearchResult
- searchId
: pwiz::data::pepxml::SearchResult
- searchID
: pwiz::data::pepxml::SearchSummary
- SearchModification()
: pwiz::identdata::SearchModification
- searchNbhdCalculator
: pwiz::data::pepxml::MatchData
- SearchResult()
: pwiz::data::pepxml::SearchResult
- searchResult
: pwiz::data::pepxml::SpectrumQuery
- searchScore
: pwiz::data::pepxml::SearchHit
- SearchScore()
: pwiz::data::pepxml::SearchScore
- searchSummary
: pwiz::data::pepxml::MSMSRunSummary
- SearchSummary()
: pwiz::data::pepxml::SearchSummary
- searchType
: pwiz::identdata::SpectrumIdentificationProtocol
- second
: Root
- SecondHandler()
: SecondHandler
- secondHandler_
: RootHandler
- SelectedIndexPredicate()
: SelectedIndexPredicate
- SelectedIon()
: pwiz::msdata::SelectedIon
- selectedIons
: pwiz::msdata::Precursor
- sense
: pwiz::data::pepxml::Specificity
, pwiz::identdata::PepXMLSpecificity
- sensitivity
: pwiz::data::pepxml::RocDataPoint
- seq
: pwiz::identdata::DBSequence
, pwiz::identdata::dbsequence_p
, pwiz::identdata::seq_p
, pwiz::identdata::sequence_p
- seq_p()
: pwiz::identdata::seq_p
- SeqMinus()
: ralab::base::base::utilities::SeqMinus< TReal >
- SeqPlus()
: ralab::base::base::utilities::SeqPlus< TReal >
- sequence
: pwiz::peptideid::PeptideID::Record
, pwiz::proteome::IPIFASTADatabase::Record
, pwiz::proteome::Peptide
, pwiz::tradata::Peptide
, pwiz::tradata::Protein
, TestFragmentation
, TestModifiedPeptide
, TestPeptide
- sequence_p()
: pwiz::identdata::sequence_p
- sequenceCollection
: pwiz::identdata::IdentData
- Serializer_FASTA()
: pwiz::proteome::Serializer_FASTA
- Serializer_MGF()
: pwiz::msdata::Serializer_MGF
- Serializer_MSn()
: pwiz::msdata::Serializer_MSn
- Serializer_mzIdentML()
: pwiz::identdata::Serializer_mzIdentML
- Serializer_mzML()
: pwiz::msdata::Serializer_mzML
- Serializer_mzXML()
: pwiz::msdata::Serializer_mzXML
- Serializer_pepXML()
: pwiz::identdata::Serializer_pepXML
- Serializer_protXML()
: pwiz::identdata::Serializer_protXML
- Serializer_Text()
: pwiz::identdata::Serializer_Text
- Serializer_traML()
: pwiz::tradata::Serializer_traML
- set
: pwiz::analysis::PepxmlRecordReader
, pwiz::data::ParamContainer
, pwiz::identdata::DelimReader
, pwiz::minimxml::SAXParser::Handler::Attributes::attribute
, ralab::base::resample::Bucket1D
- setBreaks()
: ralab::base::resample::Bin1D
- setDataProcessingPtr()
: pwiz::msdata::ChromatogramListBase
, pwiz::msdata::SpectrumListBase
- setDebug()
: pwiz::identdata::Pep2MzIdent
- setHandler()
: pwiz::util::TabReader
- setMode()
: pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
, pwiz::proteome::ProteinListCache
- setMspa()
: pwiz::identdata::Pep2MzIdent
- setMZIntensityArrays()
: pwiz::msdata::Spectrum
- setMZIntensityPairs()
: pwiz::msdata::Spectrum
- setParamMap()
: pwiz::identdata::Pep2MzIdent
- setParserIndex()
: pwiz::minimxml::SAXParser::Handler::Attributes
- setPattern()
: pwiz::identdata::RegexCVMap
- SetRetentionTime()
: SetRetentionTime
- setTimeIntensityArrays()
: pwiz::msdata::Chromatogram
- setTimeIntensityPairs()
: pwiz::msdata::Chromatogram
- setVerbose()
: pwiz::identdata::Pep2MzIdent
- sha1_
: pwiz::util::SHA1SymmetricFilter
- SHA1_ostream()
: pwiz::util::SHA1_ostream
- SHA1Calculator()
: pwiz::util::SHA1Calculator
- sha1Calculator_
: pwiz::msdata::SHA1OutputObserver
- SHA1Filter()
: pwiz::util::SHA1Filter
- shared_map()
: pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
- shift()
: pwiz::data::FrequencyData
- shortName()
: pwiz::cv::CVTermInfo
- sieve
: pwiz::msdata::SpectrumIterator::Config
- sigma_
: ralab::base::filter::utilities::Gauss< TReal >
, ralab::base::filter::utilities::Gauss_1deriv< TReal >
, ralab::base::filter::utilities::Mexican_Hat2< TReal >
, ralab::base::filter::utilities::Mexican_Hat< TReal >
- sigVal_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simAsSpectra
: pwiz::msdata::Reader::Config
- Simple()
: Simple
- SimpleAnalyzer()
: SimpleAnalyzer
- SimplePeakArea()
: ralab::base::ms::SimplePeakArea< TReal >
- SimplePicker()
: ralab::base::ms::SimplePicker< TReal >
- simplepicker_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- SimpleProgressCallback()
: SimpleProgressCallback
- simulatedIntensityRankSum
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedKLs
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedSSEs
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulateKL()
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulateSSE()
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulateTotIntensity()
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- sinBx_
: ParametrizedCosine
- singlyChargedFraction
: TestChargeStateCalculator
- siteRegexp
: pwiz::identdata::Enzyme
- size()
: FilterWrapper
, MyBase
, pwiz::analysis::ProteinList_DecoyGenerator
, pwiz::analysis::ProteinList_Filter
, pwiz::analysis::SpectrumList_Filter
, pwiz::analysis::SpectrumList_ScanSummer
, pwiz::analysis::SpectrumList_Sorter
, pwiz::data::BinaryIndexStream
, pwiz::data::Index
, pwiz::data::MemoryIndex
, pwiz::math::OrderedPairContainerRef
, pwiz::minimxml::SAXParser::Handler::Attributes
, pwiz::msdata::ChromatogramList
, pwiz::msdata::ChromatogramListSimple
, pwiz::msdata::detail::ChromatogramList_ABI
, pwiz::msdata::detail::ChromatogramList_Agilent
, pwiz::msdata::detail::ChromatogramList_Bruker
, pwiz::msdata::detail::ChromatogramList_Shimadzu
, pwiz::msdata::detail::ChromatogramList_Thermo
, pwiz::msdata::detail::ChromatogramList_Waters
, pwiz::msdata::detail::SpectrumList_ABI
, pwiz::msdata::detail::SpectrumList_ABI_T2D
, pwiz::msdata::detail::SpectrumList_Agilent
, pwiz::msdata::detail::SpectrumList_Bruker
, pwiz::msdata::detail::SpectrumList_Thermo
, pwiz::msdata::detail::SpectrumList_UIMF
, pwiz::msdata::detail::SpectrumList_Waters
, pwiz::msdata::SpectrumList
, pwiz::msdata::SpectrumListSimple
, pwiz::msdata::SpectrumListWrapper
, pwiz::proteome::ProteinList
, pwiz::proteome::ProteinListSimple
, pwiz::proteome::ProteinListWrapper
, pwiz::util::CharIndexedVector< T >
, pwiz::util::IntegerSet
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::MSIHandler
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- size_type
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- sizeInDbEntries
: pwiz::data::pepxml::SearchDatabase
- sizeOfResidues
: pwiz::data::pepxml::SearchDatabase
- smooth()
: pwiz::analysis::SavitzkyGolaySmoother
, pwiz::analysis::Smoother
, pwiz::analysis::WhittakerSmoother
- smooth_copy()
: pwiz::analysis::SavitzkyGolaySmoother
, pwiz::analysis::Smoother
, pwiz::analysis::WhittakerSmoother
- smoothedintensity_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- smoothwith_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- software
: pwiz::data::peakdata::PeakData
- Software()
: pwiz::data::peakdata::Software
, pwiz::msdata::Software
, pwiz::tradata::Software
- software_p()
: pwiz::identdata::software_p
- softwareName
: pwiz::identdata::AnalysisSoftware
- softwarePtr
: pwiz::msdata::InstrumentConfiguration
, pwiz::msdata::ProcessingMethod
, pwiz::tradata::Prediction
, pwiz::tradata::RetentionTime
- softwarePtrs
: pwiz::msdata::MSData
, pwiz::tradata::TraData
- solve()
: pwiz::math::LinearLeastSquares< LinearLeastSquaresType_LU >
, pwiz::math::LinearLeastSquares< LinearLeastSquaresType_QR >
, pwiz::math::LinearSolver< LinearSolverType_LU >
, pwiz::math::LinearSolver< LinearSolverType_QR >
- sort
: pwiz::identdata::Serializer_Text::Config
- sortBy
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- SortBy
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- SortBy_Proximity
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- SortBy_Score
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- source
: pwiz::data::peakdata::Software
, pwiz::msdata::ComponentList
- sourceFile
: pwiz::identdata::Inputs
- SourceFile()
: pwiz::msdata::SourceFile
- sourceFilename
: pwiz::analysis::MSDataAnalyzer::DataInfo
, pwiz::data::peakdata::PeakData
- sourceFilePosition
: pwiz::msdata::ChromatogramIdentity
, pwiz::msdata::SpectrumIdentity
- sourceFilePositionForBinarySpectrumData
: pwiz::msdata::SpectrumIdentityFromXML
- sourceFilePtr
: pwiz::msdata::Precursor
, pwiz::msdata::Scan
, pwiz::msdata::Spectrum
- sourceFilePtrs
: pwiz::msdata::FileDescription
, pwiz::msdata::ScanSettings
- sowPeak()
: pwiz::analysis::PeakelGrower
, pwiz::analysis::PeakelGrower_Proximity
- sowPeaks()
: pwiz::analysis::PeakelGrower
- space_type
: OneMinusAbs
, pwiz::math::MatchedFilter::KernelTraits< Kernel >
, pwiz::math::MatchedFilter::KernelTraitsBase< Kernel >
, pwiz::math::MatchedFilter::KernelTraitsBase< Y(*)(X)>
- specificity
: pwiz::data::pepxml::SampleEnzyme
- Specificity()
: pwiz::data::pepxml::Specificity
- specificityRules
: pwiz::identdata::SearchModification
- specificTermini()
: pwiz::proteome::DigestedPeptide
- spectra
: pwiz::msdata::SpectrumListSimple
- spectraData
: pwiz::identdata::Inputs
- SpectraData()
: pwiz::identdata::SpectraData
- spectraDataPtr
: pwiz::identdata::SpectrumIdentificationResult
- spectrum()
: FilterWrapper
, MyBase
, MyWrapper
, pwiz::analysis::PepxmlRecordReader::record
, pwiz::analysis::SpectrumList_3D
, pwiz::analysis::SpectrumList_ChargeFromIsotope
, pwiz::analysis::SpectrumList_ChargeStateCalculator
, pwiz::analysis::SpectrumList_Filter
, pwiz::analysis::SpectrumList_IonMobility
, pwiz::analysis::SpectrumList_LockmassRefiner
, pwiz::analysis::SpectrumList_MetadataFixer
, pwiz::analysis::SpectrumList_MZRefiner
, pwiz::analysis::SpectrumList_MZWindow
, pwiz::analysis::SpectrumList_PeakFilter
, pwiz::analysis::SpectrumList_PeakPicker
, pwiz::analysis::SpectrumList_PrecursorRecalculator
, pwiz::analysis::SpectrumList_PrecursorRefine
, pwiz::analysis::SpectrumList_ScanSummer
, pwiz::analysis::SpectrumList_Smoother
, pwiz::analysis::SpectrumList_Sorter
, pwiz::analysis::SpectrumList_TitleMaker
, pwiz::analysis::SpectrumList_ZeroSamplesFilter
, pwiz::data::pepxml::SpectrumQuery
, pwiz::msdata::detail::SpectrumList_ABI
, pwiz::msdata::detail::SpectrumList_ABI_T2D
, pwiz::msdata::detail::SpectrumList_Agilent
, pwiz::msdata::detail::SpectrumList_Bruker
, pwiz::msdata::detail::SpectrumList_Thermo
, pwiz::msdata::detail::SpectrumList_UIMF
, pwiz::msdata::detail::SpectrumList_Waters
- Spectrum()
: pwiz::msdata::Spectrum
- spectrum()
: pwiz::msdata::SpectrumList
, pwiz::msdata::SpectrumListCache::CacheEntry
, pwiz::msdata::SpectrumListCache
, pwiz::msdata::SpectrumListSimple
, pwiz::msdata::SpectrumListWrapper
- spectrum3d()
: pwiz::analysis::SpectrumList_3D
, pwiz::msdata::detail::SpectrumList_Agilent
, pwiz::msdata::detail::SpectrumList_Waters
- SpectrumBinaryData()
: pwiz::analysis::SpectrumBinaryData
- spectrumCache()
: pwiz::msdata::SpectrumListCache
- spectrumCache_
: pwiz::msdata::SpectrumListCache
- spectrumCount()
: pwiz::msdata::Index_mzML
- spectrumID
: pwiz::identdata::SpectrumIdentificationResult
, pwiz::msdata::Precursor
, pwiz::msdata::Scan
- spectrumIdentification
: pwiz::identdata::AnalysisCollection
- SpectrumIdentification()
: pwiz::identdata::SpectrumIdentification
- SpectrumIdentificationItem()
: pwiz::identdata::SpectrumIdentificationItem
- spectrumIdentificationItem
: pwiz::identdata::SpectrumIdentificationResult
- spectrumIdentificationItemPtr
: pwiz::identdata::PeptideHypothesis
- spectrumIdentificationList
: pwiz::identdata::AnalysisData
- SpectrumIdentificationList()
: pwiz::identdata::SpectrumIdentificationList
- spectrumIdentificationListPtr
: pwiz::identdata::SpectrumIdentification
- spectrumIdentificationProtocol
: pwiz::identdata::AnalysisProtocolCollection
- SpectrumIdentificationProtocol()
: pwiz::identdata::SpectrumIdentificationProtocol
- spectrumIdentificationProtocolPtr
: pwiz::identdata::SpectrumIdentification
- spectrumIdentificationResult
: pwiz::identdata::SpectrumIdentificationList
- SpectrumIdentificationResult()
: pwiz::identdata::SpectrumIdentificationResult
- spectrumIdentities
: pwiz::analysis::SpectrumList_ScanSummer
- spectrumIdentity()
: FilterWrapper
, MyBase
, pwiz::analysis::SpectrumList_Filter
, pwiz::analysis::SpectrumList_ScanSummer
, pwiz::analysis::SpectrumList_Sorter
, pwiz::msdata::detail::SpectrumList_ABI
, pwiz::msdata::detail::SpectrumList_ABI_T2D
, pwiz::msdata::detail::SpectrumList_Agilent
, pwiz::msdata::detail::SpectrumList_Bruker
, pwiz::msdata::detail::SpectrumList_Thermo
, pwiz::msdata::detail::SpectrumList_UIMF
, pwiz::msdata::detail::SpectrumList_Waters
, pwiz::msdata::Index_mzML
- SpectrumIdentity()
: pwiz::msdata::SpectrumIdentity
- spectrumIdentity()
: pwiz::msdata::SpectrumList
, pwiz::msdata::SpectrumListSimple
, pwiz::msdata::SpectrumListWrapper
- SpectrumIdentityFromMzXML()
: pwiz::msdata::SpectrumIdentityFromMzXML
- SpectrumIdentityFromXML()
: pwiz::msdata::SpectrumIdentityFromXML
- spectrumIDFormat
: pwiz::identdata::SpectraData
- spectrumInfo()
: pwiz::analysis::MSDataCache
- SpectrumInfo()
: pwiz::msdata::SpectrumInfo
- SpectrumIterator()
: pwiz::msdata::SpectrumIterator
- SpectrumList_3D()
: pwiz::analysis::SpectrumList_3D
- SpectrumList_ChargeFromIsotope()
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- SpectrumList_ChargeStateCalculator()
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- SpectrumList_Filter()
: pwiz::analysis::SpectrumList_Filter
- SpectrumList_FilterPredicate_ActivationType()
: pwiz::analysis::SpectrumList_FilterPredicate_ActivationType
- SpectrumList_FilterPredicate_AnalyzerType()
: pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType
- SpectrumList_FilterPredicate_ChargeStateSet()
: pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet
- SpectrumList_FilterPredicate_DefaultArrayLengthSet()
: pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet
- SpectrumList_FilterPredicate_IndexSet()
: pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
- SpectrumList_FilterPredicate_MSLevelSet()
: pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet
- SpectrumList_FilterPredicate_MzPresent()
: pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- SpectrumList_FilterPredicate_Polarity()
: pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- SpectrumList_FilterPredicate_PrecursorMzSet()
: pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- SpectrumList_FilterPredicate_ScanEventSet()
: pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
- SpectrumList_FilterPredicate_ScanNumberSet()
: pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- SpectrumList_FilterPredicate_ScanTimeRange()
: pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- SpectrumList_IonMobility()
: pwiz::analysis::SpectrumList_IonMobility
- SpectrumList_LockmassRefiner()
: pwiz::analysis::SpectrumList_LockmassRefiner
- SpectrumList_MetadataFixer()
: pwiz::analysis::SpectrumList_MetadataFixer
- SpectrumList_MZRefiner()
: pwiz::analysis::SpectrumList_MZRefiner
- SpectrumList_MZWindow()
: pwiz::analysis::SpectrumList_MZWindow
- SpectrumList_PeakFilter()
: pwiz::analysis::SpectrumList_PeakFilter
- SpectrumList_PeakPicker()
: pwiz::analysis::SpectrumList_PeakPicker
- SpectrumList_PrecursorRecalculator()
: pwiz::analysis::SpectrumList_PrecursorRecalculator
- SpectrumList_PrecursorRefine()
: pwiz::analysis::SpectrumList_PrecursorRefine
- SpectrumList_ScanSummer()
: pwiz::analysis::SpectrumList_ScanSummer
- SpectrumList_Smoother()
: pwiz::analysis::SpectrumList_Smoother
- SpectrumList_Sorter()
: pwiz::analysis::SpectrumList_Sorter
- SpectrumList_TitleMaker()
: pwiz::analysis::SpectrumList_TitleMaker
- SpectrumList_ZeroSamplesFilter()
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- SpectrumListBase()
: pwiz::msdata::SpectrumListBase
- SpectrumListCache()
: pwiz::msdata::SpectrumListCache
- spectrumListPtr
: pwiz::msdata::Run
- SpectrumListWrapper()
: pwiz::msdata::SpectrumListWrapper
- spectrumQueries
: pwiz::data::pepxml::MSMSRunSummary
- spectrumQuery
: pwiz::data::pepxml::Match
- SpectrumQuery()
: pwiz::data::pepxml::SpectrumQuery
- spectrumStats()
: pwiz::analysis::RegionAnalyzer
- SpectrumStats()
: pwiz::analysis::RegionAnalyzer::SpectrumStats
- SpectrumTable()
: pwiz::analysis::SpectrumTable
- SpectrumWorkerThreads()
: pwiz::msdata::SpectrumWorkerThreads
- spotID
: pwiz::msdata::SpectrumIdentity
- sprank
: pwiz::analysis::PepxmlRecordReader::record
- spscore
: pwiz::analysis::PepxmlRecordReader::record
- srmAsSpectra
: pwiz::msdata::Reader::Config
- standardDeviation
: pwiz::analysis::Noise
- start
: pwiz::analysis::Peak
, pwiz::identdata::PeptideEvidence
- start_
: pwiz::util::Timer
- startElement()
: AnotherRootHandler
, FifthHandler
, FirstHandler
, PrintEventHandler
, pwiz::data::peakdata::HandlerFeature
, pwiz::data::peakdata::HandlerPeak
, pwiz::data::peakdata::HandlerPeakel
, pwiz::minimxml::SAXParser::Handler
, pwiz::minimxml::XMLWriter
, RootHandler
, SecondHandler
- starts_with()
: pwiz::minimxml::SAXParser::saxstring
- startScan
: pwiz::data::pepxml::SpectrumQuery
- startTimeStamp
: pwiz::msdata::Run
- stats()
: pwiz::analysis::RegionAnalyzer
- Stats()
: pwiz::analysis::RegionAnalyzer::Stats
, pwiz::math::Stats
- Status()
: pwiz::minimxml::SAXParser::Handler::Status
, pwiz::util::IterationListener
- Status_Cancel
: pwiz::util::IterationListener
- Status_Ok
: pwiz::util::IterationListener
- stop
: pwiz::analysis::Peak
- str()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- stream_offset
: pwiz::data::Index
, pwiz::minimxml::SAXParser::Handler
, pwiz::minimxml::XMLWriter
- string()
: pwiz::util::Image
- StringMatchCVMap()
: pwiz::identdata::StringMatchCVMap
- stringUp()
: pwiz::util::Image
- subSamples
: pwiz::identdata::Sample
- substitutionModification
: pwiz::identdata::Peptide
- SubstitutionModification()
: pwiz::identdata::SubstitutionModification
- suggestedDetailLevel()
: HasBinaryDataPredicate
, pwiz::analysis::SpectrumList_Filter::Predicate
, pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- sum_peak_intensity
: pwiz::analysis::RegionAnalyzer::Stats
- sum_sumIntensity
: pwiz::analysis::RegionAnalyzer::Stats
- sumAmplitude()
: pwiz::data::peakdata::PeakFamily
- sumArea()
: pwiz::data::peakdata::PeakFamily
- sumIntensity
: pwiz::analysis::RegionAnalyzer::SpectrumStats
- summ_
: ralab::base::resample::SamplingWith
- summaryXML
: pwiz::data::pepxml::MSMSPipelineAnalysis
- sumRanks
: scoreChain
- sumSquares()
: pwiz::data::FrequencyData
- sumSquaresModel()
: pwiz::frequency::TruncatedLorentzianEstimator
- sumSubScansNaive()
: pwiz::analysis::SpectrumList_ScanSummer
- sw_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- swap()
: pwiz::proteome::ModificationMap
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- swapMZIntensityArrays()
: pwiz::msdata::Spectrum
- symbol
: pwiz::chemistry::detail::Element
, pwiz::chemistry::Element::Info::Record
, pwiz::data::pepxml::AminoAcidModification
, pwiz::proteome::AminoAcid::Info::Record
, TestAminoAcid