ProteoWizard
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adds a level of flexible MRU caching to a SpectrumList processor chain More...
#include <SpectrumListCache.hpp>
Classes | |
struct | CacheEntry |
a cache mapping spectrum indices to SpectrumPtrs More... | |
Public Types | |
typedef MemoryMRUCache< CacheEntry, BOOST_MULTI_INDEX_MEMBER(CacheEntry, size_t, index) > | CacheType |
Public Member Functions | |
SpectrumListCache (const SpectrumListPtr &inner, MemoryMRUCacheMode cacheMode, size_t cacheSize) | |
virtual SpectrumPtr | spectrum (size_t index, bool getBinaryData=false) const |
returns the requested spectrum which may or may not be cached depending on the current cache mode More... | |
CacheType & | spectrumCache () |
returns a reference to the cache, to enable clearing it or changing the mode More... | |
const CacheType & | spectrumCache () const |
returns a const-reference to the cache More... | |
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SpectrumListWrapper (const SpectrumListPtr &inner) | |
virtual size_t | size () const |
returns the number of spectra More... | |
virtual bool | empty () const |
returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) More... | |
virtual const SpectrumIdentity & | spectrumIdentity (size_t index) const |
access to a spectrum index More... | |
virtual SpectrumPtr | spectrum (size_t index, DetailLevel detailLevel) const |
retrieve a spectrum by index More... | |
virtual const boost::shared_ptr< const DataProcessing > | dataProcessingPtr () const |
returns the data processing affecting spectra retrieved through this interface More... | |
SpectrumListPtr | inner () const |
SpectrumListPtr | innermost () const |
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virtual size_t | find (const std::string &id) const |
find id in the spectrum index (returns size() on failure) More... | |
virtual size_t | findAbbreviated (const std::string &abbreviatedId, char delimiter='.') const |
find an abbreviated id (e.g. "1.1.123.2" for "sample=1 period=1 cycle=123 experiment=2") in the spectrum index (returns size() on failure) More... | |
virtual IndexList | findNameValue (const std::string &name, const std::string &value) const |
find all spectrum indexes with specified name/value pair More... | |
virtual IndexList | findSpotID (const std::string &spotID) const |
find all spectrum indexes with spotID (returns empty vector on failure) More... | |
virtual SpectrumPtr | spectrum (const SpectrumPtr &seed, bool getBinaryData) const |
get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data More... | |
virtual void | warn_once (const char *msg) const |
issues a warning once per SpectrumList instance (based on string hash) More... | |
virtual | ~SpectrumList () |
Protected Attributes | |
CacheType | spectrumCache_ |
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SpectrumListPtr | inner_ |
DataProcessingPtr | dp_ |
Private Member Functions | |
SpectrumListCache (SpectrumListCache &) | |
SpectrumListCache & | operator= (SpectrumListCache &) |
adds a level of flexible MRU caching to a SpectrumList processor chain
Definition at line 37 of file SpectrumListCache.hpp.
typedef MemoryMRUCache<CacheEntry, BOOST_MULTI_INDEX_MEMBER(CacheEntry, size_t, index) > pwiz::msdata::SpectrumListCache::CacheType |
Definition at line 43 of file SpectrumListCache.hpp.
pwiz::msdata::SpectrumListCache::SpectrumListCache | ( | const SpectrumListPtr & | inner, |
MemoryMRUCacheMode | cacheMode, | ||
size_t | cacheSize | ||
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returns the requested spectrum which may or may not be cached depending on the current cache mode
Implements pwiz::msdata::SpectrumListWrapper.
Referenced by testFileReads(), testModeBinaryDataOnly(), testModeMetaDataAndBinaryData(), testModeMetaDataOnly(), and testModeOff().
CacheType& pwiz::msdata::SpectrumListCache::spectrumCache | ( | ) |
returns a reference to the cache, to enable clearing it or changing the mode
Referenced by testModeBinaryDataOnly(), testModeMetaDataAndBinaryData(), testModeMetaDataOnly(), and testModeOff().
const CacheType& pwiz::msdata::SpectrumListCache::spectrumCache | ( | ) | const |
returns a const-reference to the cache
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private |
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mutableprotected |
Definition at line 60 of file SpectrumListCache.hpp.