ProteoWizard
ChromatogramListBase.hpp
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1 //
2 // $Id: ChromatogramListBase.hpp 9490 2016-03-22 22:20:36Z pcbrefugee $
3 //
4 //
5 // Original author: Darren Kessner <darren@proteowizard.org>
6 //
7 // Copyright 2009 Spielberg Family Center for Applied Proteomics
8 // Cedars-Sinai Medical Center, Los Angeles, California 90048
9 //
10 // Licensed under the Apache License, Version 2.0 (the "License");
11 // you may not use this file except in compliance with the License.
12 // You may obtain a copy of the License at
13 //
14 // http://www.apache.org/licenses/LICENSE-2.0
15 //
16 // Unless required by applicable law or agreed to in writing, software
17 // distributed under the License is distributed on an "AS IS" BASIS,
18 // WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
19 // See the License for the specific language governing permissions and
20 // limitations under the License.
21 //
22 
23 
24 #ifndef _CHROMATOGRAMLISTBASE_HPP_
25 #define _CHROMATOGRAMLISTBASE_HPP_
26 
27 
29 #include <stdexcept>
30 
31 
32 namespace pwiz {
33 namespace msdata {
34 
35 
36 /// common functionality for base ChromatogramList implementations
38 {
39  public:
40 
41  /// implementation of ChromatogramList
42  virtual const boost::shared_ptr<const DataProcessing> dataProcessingPtr() const {return dp_;}
43 
44  /// set DataProcessing
45  virtual void setDataProcessingPtr(DataProcessingPtr dp) {dp_ = dp;}
46 
47  const char* polarityStringForFilter(CVID polarityType) const
48  {
49  return (polarityType == MS_negative_scan) ? "- " : ""; // For backward compatibility, let assumptions about postive ion mode remain
50  }
51 
52  protected:
53 
55 };
56 
57 
58 } // namespace msdata
59 } // namespace pwiz
60 
61 
62 #endif // _CHROMATOGRAMLISTBASE_HPP_
63 
common functionality for base ChromatogramList implementations
Interface for accessing chromatograms, which may be stored in memory or backed by a data file (RAW...
Definition: MSData.hpp:752
virtual const boost::shared_ptr< const DataProcessing > dataProcessingPtr() const
implementation of ChromatogramList
virtual void setDataProcessingPtr(DataProcessingPtr dp)
set DataProcessing
const char * polarityStringForFilter(CVID polarityType) const
boost::shared_ptr< DataProcessing > DataProcessingPtr
Definition: MSData.hpp:287
#define PWIZ_API_DECL
Definition: Export.hpp:32
MS_negative_scan
negative scan: Polarity of the scan is negative.
Definition: cv.hpp:574