Here is a list of all class members with links to the classes they belong to:
- c -
- c()
: pwiz::proteome::Fragmentation
, SHA1_WORKSPACE_BLOCK
- c1
: TestFragmentation
- c1Plus2
: TestFragmentation
- c2d_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- c_str()
: pwiz::minimxml::SAXParser::saxstring
- cache()
: pwiz::proteome::ProteinListCache
, TestOutputObserver
- cache_
: pwiz::analysis::RegionSIC
, pwiz::analysis::RegionSlice
, pwiz::analysis::RegionTIC
, pwiz::analysis::RunSummary
, pwiz::analysis::SpectrumBinaryData
, pwiz::analysis::SpectrumTable
, pwiz::proteome::ProteinListCache
- CacheEntry()
: pwiz::msdata::SpectrumListCache::CacheEntry
- cacheMaxMass
: pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- cacheSize
: pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- CacheType
: pwiz::msdata::SpectrumListCache
, pwiz::proteome::ProteinListCache
- calcCorrelation()
: pwiz::analysis::CwtPeakDetector
- calcNeutralPepMass
: pwiz::data::pepxml::SearchHit
- calculatedMass
: pwiz::data::pepxml::Match
- calculatedMassToCharge
: pwiz::identdata::SpectrumIdentificationItem
- calculatedPI
: pwiz::identdata::SpectrumIdentificationItem
- calculateMetadata()
: pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peakel
- calculateNoise()
: pwiz::analysis::NoiseCalculator
, pwiz::analysis::NoiseCalculator_2Pass
- CalibrationParameters()
: pwiz::data::CalibrationParameters
- calibrationParameters()
: pwiz::data::FrequencyData
, pwiz::data::peakdata::Scan
- cancelIndex_
: CancelListener
- CancelListener()
: CancelListener
- CancelProgressCallback()
: CancelProgressCallback
- capacity()
: pwiz::minimxml::SAXParser::saxstring
- ccsToDriftTime()
: pwiz::analysis::SpectrumList_IonMobility
, pwiz::msdata::detail::SpectrumList_Agilent
- center()
: pwiz::frequency::MagnitudeLorentzian
, pwiz::math::Parabola
- chainIndex
: scoreChain
- char_type
: pwiz::minimxml::basic_charcounter< Ch >
, pwiz::util::SHA1SymmetricFilter
- characters()
: FifthHandler
, FirstHandler
, PrintEventHandler
, pwiz::data::peakdata::HandlerPeak
, pwiz::minimxml::basic_charcounter< Ch >
, pwiz::minimxml::SAXParser::Handler
, pwiz::minimxml::XMLWriter
, SecondHandler
- charge
: isoChain
, isotopeChain
, pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::PeakFamily
, pwiz::frequency::PeakDetectorMatchedFilter::Score
, pwiz::identdata::IonType
- Charge
: pwiz::identdata::Serializer_Text
- charge
: pwiz::msdata::SpectrumInfo::PrecursorInfo
, pwiz::util::MSIHandler::Record
- charge_state
: TestSpectrumInfo
- charges
: pwiz::analysis::RunSummary::Config
- chargeState
: pwiz::identdata::SpectrumIdentificationItem
- chargeStateArray
: TestChargeStateCalculator
- chargeStates
: pwiz::util::MSIHandler::Record
- chargeStateSet_
: pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet
- chargeTrue
: TestInfo
- CharIndexedVector()
: pwiz::util::CharIndexedVector< T >
- CharIndexedVectorConstIterator()
: pwiz::util::CharIndexedVectorConstIterator< T >
- CharIndexedVectorIterator()
: pwiz::util::CharIndexedVectorIterator< T >
- chars_
: pwiz::minimxml::basic_charcounter< Ch >
- checkDelimiter()
: pwiz::analysis::TabularConfig
- child()
: pwiz::identdata::TextWriter
, pwiz::msdata::TextWriter
, pwiz::proteome::TextWriter
, pwiz::tradata::TextWriter
- chromatogram()
: MyBase
- Chromatogram()
: pwiz::msdata::Chromatogram
- chromatogram()
: pwiz::msdata::ChromatogramList
, pwiz::msdata::ChromatogramListSimple
, pwiz::msdata::detail::ChromatogramList_ABI
, pwiz::msdata::detail::ChromatogramList_Agilent
, pwiz::msdata::detail::ChromatogramList_Bruker
, pwiz::msdata::detail::ChromatogramList_Shimadzu
, pwiz::msdata::detail::ChromatogramList_Thermo
, pwiz::msdata::detail::ChromatogramList_Waters
- chromatogramCount()
: pwiz::msdata::Index_mzML
- chromatogramIdentity()
: MyBase
- ChromatogramIdentity()
: pwiz::msdata::ChromatogramIdentity
- chromatogramIdentity()
: pwiz::msdata::ChromatogramList
, pwiz::msdata::ChromatogramListSimple
, pwiz::msdata::detail::ChromatogramList_ABI
, pwiz::msdata::detail::ChromatogramList_Agilent
, pwiz::msdata::detail::ChromatogramList_Bruker
, pwiz::msdata::detail::ChromatogramList_Shimadzu
, pwiz::msdata::detail::ChromatogramList_Thermo
, pwiz::msdata::detail::ChromatogramList_Waters
, pwiz::msdata::Index_mzML
- chromatogramListPtr
: pwiz::msdata::Run
- chromatograms
: pwiz::msdata::ChromatogramListSimple
- circle()
: pwiz::util::Image
- clear()
: pwiz::data::ParamContainer
, pwiz::identdata::Pep2MzIdent
, pwiz::minimxml::SAXParser::saxstring
, pwiz::proteome::ModificationMap
, pwiz::util::CharIndexedVector< T >
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- clearBinaryData()
: pwiz::msdata::SpectrumInfo
- clip()
: pwiz::util::Image
- clipNTerminalMethionine
: pwiz::proteome::Digestion::Config
- close()
: pwiz::analysis::MSDataAnalyzer
, pwiz::analysis::MSDataAnalyzerContainer
, pwiz::analysis::PepxmlRecordReader
, pwiz::analysis::RegionAnalyzer
, pwiz::analysis::RegionSIC
, pwiz::analysis::RegionSlice
, pwiz::analysis::RegionTIC
, pwiz::analysis::RunSummary
, pwiz::analysis::SpectrumTable
, pwiz::util::DefaultTabHandler
, pwiz::util::random_access_compressed_ifstream
, pwiz::util::SHA1Calculator
, pwiz::util::SHA1SymmetricFilter
, pwiz::util::TabHandler
, SimpleAnalyzer
- closed
: SimpleAnalyzer
- cN
: TestFragmentation
- cNPlus2
: TestFragmentation
- code
: pwiz::identdata::AmbiguousResidue
, pwiz::identdata::Residue
- coefficients()
: pwiz::frequency::MagnitudeLorentzian
, pwiz::math::Parabola
- Col
: ridgeLine
- collapseRadius
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- Color()
: pwiz::util::Image::Color
- color
: Reader2::Config
, Reader2::ReaderConfig
- columns()
: pwiz::util::DefaultTabHandler
- combineIonMobilitySpectra
: pwiz::msdata::Reader::Config
- comments
: pwiz::data::pepxml::MixtureModel
- compare
: TestOperator
- Component()
: pwiz::msdata::Component
- componentList
: pwiz::msdata::InstrumentConfiguration
- Compound()
: pwiz::tradata::Compound
- compoundPtr
: pwiz::tradata::Target
, pwiz::tradata::Transition
- compoundPtrs
: pwiz::tradata::TraData
- Compression
: pwiz::msdata::BinaryDataEncoder
- compression
: pwiz::msdata::BinaryDataEncoder::Config
- Compression_None
: pwiz::msdata::BinaryDataEncoder
- Compression_Zlib
: pwiz::msdata::BinaryDataEncoder
- compressionType
: pwiz::util::random_access_compressed_ifstream
- Config()
: pwiz::analysis::FeatureDetectorPeakel::Config
, pwiz::analysis::MS2Deisotoper::Config
, pwiz::analysis::MS2NoiseFilter::Config
, pwiz::analysis::MSDataCache::Config
, pwiz::analysis::NoiseCalculator_2Pass::Config
, pwiz::analysis::PeakelGrower_Proximity::Config
, pwiz::analysis::PeakelPicker_Basic::Config
, pwiz::analysis::PeakFamilyDetectorFT::Config
, pwiz::analysis::PeakFinder_SNR::Config
, pwiz::analysis::PeakFitter_Parabola::Config
- config
: pwiz::analysis::PepxmlRecordReader
- Config()
: pwiz::analysis::PepxmlRecordReader::Config
, pwiz::analysis::PrecursorMassFilter::Config
, pwiz::analysis::PrecursorRecalculatorDefault::Config
, pwiz::analysis::RegionAnalyzer::Config
, pwiz::analysis::RegionSIC::Config
, pwiz::analysis::RegionSlice::Config
, pwiz::analysis::RegionTIC::Config
, pwiz::analysis::RunSummary::Config
, pwiz::analysis::SpectrumBinaryData::Config
, pwiz::analysis::SpectrumTable::Config
, pwiz::chemistry::IsotopeEnvelopeEstimator::Config
, pwiz::frequency::FrequencyEstimatorPhysicalModel::Config
- config()
: pwiz::frequency::PeakDetectorMatchedFilter
- Config()
: pwiz::frequency::PeakDetectorMatchedFilter::Config
, pwiz::identdata::Reader::Config
, pwiz::identdata::Serializer_mzIdentML::Config
, pwiz::identdata::Serializer_pepXML::Config
, pwiz::identdata::Serializer_protXML::Config
, pwiz::identdata::Serializer_Text::Config
, pwiz::minimxml::XMLWriter::Config
, pwiz::msdata::BinaryDataEncoder::Config
, pwiz::msdata::Reader::Config
, pwiz::msdata::Serializer_mzML::Config
, pwiz::msdata::Serializer_mzXML::Config
, pwiz::msdata::SpectrumIterator::Config
, pwiz::proteome::Digestion::Config
, pwiz::proteome::Reader_FASTA::Config
, pwiz::proteome::Serializer_FASTA::Config
- config
: Reader1
- Config()
: Reader1::Config
- config
: Reader2
- Config()
: Reader2::Config
- config_
: pwiz::analysis::NoiseCalculator_2Pass
, pwiz::analysis::PeakelGrower_Proximity
, pwiz::analysis::PeakelPicker_Basic
, pwiz::analysis::PeakFinder_SNR
, pwiz::analysis::PeakFitter_Parabola
, pwiz::analysis::RegionSIC
, pwiz::analysis::RegionTIC
, pwiz::analysis::RunSummary
, pwiz::analysis::SpectrumBinaryData
, pwiz::analysis::SpectrumTable
, pwiz::data::Diff< object_type, config_type, object_result_type >
, pwiz::data::diff_impl::Same< object_type, config_type >
, pwiz::data::diff_impl::SameDeep< object_type, config_type >
, pwiz::identdata::Serializer_mzIdentML
, pwiz::identdata::Serializer_pepXML
, pwiz::identdata::Serializer_protXML
, pwiz::proteome::Reader_FASTA
, pwiz::proteome::Serializer_FASTA
- configurationList
: pwiz::tradata::Target
, pwiz::tradata::Transition
- const_iterator
: pwiz::analysis::PepxmlRecordReader
, pwiz::data::FrequencyData
, pwiz::math::OrderedPairContainerRef
, pwiz::proteome::Digestion
, pwiz::proteome::Digestion::const_iterator
, pwiz::proteome::IPIFASTADatabase
, pwiz::util::CharIndexedVector< T >
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::VectorTabHandler
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_iterator::Impl
: pwiz::proteome::Digestion
- const_pointer
: pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_reference
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- const_reverse_iterator
: pwiz::util::CharIndexedVector< T >
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- Contact()
: pwiz::identdata::Contact
, pwiz::tradata::Contact
- contactPtr
: pwiz::identdata::ContactRole
, pwiz::tradata::Configuration
, pwiz::tradata::Prediction
- contactPtrs
: pwiz::tradata::TraData
- ContactRole()
: pwiz::identdata::ContactRole
- contactRole
: pwiz::identdata::Sample
- contactRolePtr
: pwiz::identdata::AnalysisSoftware
, pwiz::identdata::Provider
- contacts
: pwiz::msdata::FileDescription
- container
: pwiz::data::FrequencyData
- contains()
: pwiz::util::IntegerSet
, pwiz::util::IntegerSet::Interval
- convert2dense()
: ralab::base::resample::Convert2Dense
- Convert2Dense()
: ralab::base::resample::Convert2Dense
- copyDelimiterConfig()
: pwiz::analysis::TabularConfig
- Correlation()
: pwiz::math::MatchedFilter::Correlation< Y >
- correlation_data_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
- correlation_space_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
- correlation_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
- cosBx_
: ParametrizedCosine
- count
: CancelProgressCallback
, NestedHandler
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
, SimpleProgressCallback
, TestListener
, TestReader
- count_
: TestListener
- countFiltersApplied()
: pwiz::msdata::MSData
- covariance()
: pwiz::math::Stats
- cp
: pwiz::analysis::PeakFamilyDetectorFT::Config
- create()
: pwiz::analysis::FeatureDetectorPeakel
, pwiz::data::BinaryIndexStream
, pwiz::data::Index
, pwiz::data::MemoryIndex
, pwiz::frequency::FrequencyEstimatorPhysicalModel
, pwiz::frequency::FrequencyEstimatorSimple
, pwiz::frequency::ParameterEstimator
, pwiz::frequency::PeakDetectorMatchedFilter
, pwiz::frequency::PeakDetectorNaive
, pwiz::frequency::TruncatedLorentzianEstimator
, pwiz::msdata::ChromatogramList_mzML
, pwiz::msdata::SpectrumList_BTDX
, pwiz::msdata::SpectrumList_MGF
, pwiz::msdata::SpectrumList_MSn
, pwiz::msdata::SpectrumList_mzML
, pwiz::msdata::SpectrumList_mzXML
, pwiz::util::Image
- createMap()
: pwiz::identdata::CVMap
- creationDate
: pwiz::identdata::IdentData
- CSHA1()
: CSHA1
- cTermGain
: pwiz::identdata::Enzyme
- CTerminus()
: pwiz::proteome::ModificationMap
- CTerminusIsSpecific()
: pwiz::proteome::DigestedPeptide
- CTerminusIsSpecific_
: pwiz::proteome::DigestedPeptide
- CTerminusSuffix()
: pwiz::proteome::DigestedPeptide
- CTerminusSuffix_
: pwiz::proteome::DigestedPeptide
- CubicInterpolate()
: ralab::base::base::utilities::CubicInterpolate< TReal >
- current_line
: pwiz::identdata::DelimWriter
- customizations
: pwiz::identdata::AnalysisSoftware
- CustomPair()
: CustomPair
- cut
: pwiz::data::pepxml::Specificity
, pwiz::identdata::PepXMLSpecificity
- cutoffNoiseFloor()
: pwiz::data::FrequencyData
- cvFilterItems
: pwiz::analysis::SpectrumList_FilterPredicate_ActivationType
, pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType
- cvid
: pwiz::cv::CVTermInfo
, pwiz::data::CVParam
, pwiz::identdata::CVMap
- cvid_
: pwiz::data::CVParamIs
, pwiz::data::CVParamIsChildOf
- CVIDMatchCVMap()
: pwiz::identdata::CVIDMatchCVMap
- CVMap()
: pwiz::identdata::CVMap
- CVParam()
: pwiz::data::CVParam
- cvParam()
: pwiz::data::ParamContainer
- cvParamChild()
: pwiz::data::ParamContainer
- cvParamChildren()
: pwiz::data::ParamContainer
- CVParamIs()
: pwiz::data::CVParamIs
- CVParamIsChildOf()
: pwiz::data::CVParamIsChildOf
- cvParams
: pwiz::data::ParamContainer
- cvs
: pwiz::identdata::IdentData
, pwiz::msdata::MSData
, pwiz::tradata::TraData
- CVTermInfo()
: pwiz::cv::CVTermInfo
- CVTranslator()
: pwiz::data::CVTranslator
- CwtPeakDetector()
: pwiz::analysis::CwtPeakDetector