Here is a list of all class members with links to the classes they belong to:
- o -
- object_
: FifthHandler
, FirstHandler
, RootHandler
, SecondHandler
- OBO()
: pwiz::data::OBO
- obs_1_distr
: pwiz::data::pepxml::DistributionPoint
- obs_2_distr
: pwiz::data::pepxml::DistributionPoint
- obs_3_distr
: pwiz::data::pepxml::DistributionPoint
- observationDuration()
: pwiz::data::FrequencyData
, pwiz::data::peakdata::Scan
- observationDurationEstimatedFromData()
: pwiz::data::FrequencyData
- offset
: pwiz::data::Index::Entry
, pwiz::proteome::DigestedPeptide
- offset_
: pwiz::proteome::DigestedPeptide
- Ok
: pwiz::minimxml::SAXParser::Handler::Status
- open()
: pwiz::analysis::MetadataReporter
, pwiz::analysis::MSDataAnalyzer
, pwiz::analysis::MSDataAnalyzerContainer
, pwiz::analysis::MSDataCache
, pwiz::analysis::PepxmlRecordReader
, pwiz::analysis::RegionAnalyzer
, pwiz::analysis::RegionSIC
, pwiz::analysis::RegionSlice
, pwiz::analysis::RegionTIC
, pwiz::util::DefaultTabHandler
, pwiz::util::random_access_compressed_ifstream
, pwiz::util::TabHandler
, SimpleAnalyzer
- opened
: SimpleAnalyzer
- operator bool()
: pwiz::data::Diff< object_type, config_type, object_result_type >
, pwiz::identdata::DelimWriter
- operator!=()
: pwiz::chemistry::Formula
, pwiz::chemistry::MassAbundance
, pwiz::data::CalibrationParameters
, pwiz::data::CVParam
, pwiz::data::ParamContainer
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peak
, pwiz::data::peakdata::PeakData
, pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::PeakFamily
, pwiz::data::peakdata::Scan
, pwiz::data::peakdata::Software
, pwiz::data::peakdata::Software::Parameter
, pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::AnalysisResult
, pwiz::data::pepxml::EnzymaticSearchConstraint
, pwiz::data::pepxml::Match
, pwiz::data::pepxml::MatchData
, pwiz::data::pepxml::ModAminoAcidMass
, pwiz::data::pepxml::ModificationInfo
, pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
, pwiz::data::pepxml::Parameter
, pwiz::data::pepxml::PeptideProphetResult
, pwiz::data::pepxml::Q3RatioResult
, pwiz::data::pepxml::SampleEnzyme
, pwiz::data::pepxml::SearchDatabase
, pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::SearchResult
, pwiz::data::pepxml::SearchSummary
, pwiz::data::pepxml::Specificity
, pwiz::data::pepxml::SpectrumQuery
, pwiz::data::UserParam
, pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
- operator()()
: DigestedPeptideLessThan
, EnzymePtr_missedCleavages
, EnzymePtr_specificity
, Is_T2D_Directory
, IsDirectory
, IsRawData
, IsRawFile
, IsWiffFile
, MyPred
, mzrtEqual
, OneMinusAbs
, ParametrizedCosine
, PrintAttribute
, pwiz::analysis::ChromatogramDataFilter
, pwiz::analysis::MS2Deisotoper
, pwiz::analysis::MS2NoiseFilter
, pwiz::analysis::PrecursorMassFilter
, pwiz::analysis::RTMatches_Any< T >
, pwiz::analysis::RTMatches_Contains< T >
, pwiz::analysis::RTMatches_IsContainedIn< T >
, pwiz::analysis::SpectrumDataFilter
, pwiz::analysis::ThresholdFilter
, pwiz::data::CVParamIs
, pwiz::data::CVParamIsChildOf
, pwiz::data::Diff< object_type, config_type, object_result_type >
, pwiz::data::diff_impl::HasID< object_type >
, pwiz::data::diff_impl::Same< object_type, config_type >
, pwiz::data::diff_impl::SameDeep< object_type, config_type >
, pwiz::frequency::DerivativeTest::AdaptedErrorDerivative< value_type >
, pwiz::frequency::DerivativeTest::AdaptedErrorFunction< value_type >
, pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >
, pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >
, pwiz::frequency::DerivativeTest::VectorFunction< value_type >
, pwiz::frequency::MagnitudeLorentzian
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
, pwiz::frequency::ParametrizedFunction< value_type >
, pwiz::frequency::TruncatedLorentzian
, pwiz::identdata::CVIDMatchCVMap
, pwiz::identdata::CVMap
, pwiz::identdata::dbsequence_p
, pwiz::identdata::DelimWriter
, pwiz::identdata::id_p< T >
, pwiz::identdata::organization_p
, pwiz::identdata::Pep2MzIdent
, pwiz::identdata::person_p
, pwiz::identdata::RegexCVMap
, pwiz::identdata::seq_p
, pwiz::identdata::sequence_p
, pwiz::identdata::software_p
, pwiz::identdata::StringMatchCVMap
, pwiz::identdata::TextWriter
, pwiz::math::Parabola
, pwiz::msdata::TextWriter
, pwiz::peptideid::FlatRecordBuilder
, pwiz::peptideid::location_less
, pwiz::peptideid::MSInspectRecordBuilder
, pwiz::peptideid::nativeID_less
, pwiz::proteome::TextWriter
, pwiz::tradata::TextWriter
, pwiz::util::TestPathPredicate
, ralab::base::base::utilities::CosineInterpolate< TReal >
, ralab::base::base::utilities::CubicInterpolate< TReal >
, ralab::base::base::utilities::HermiteInterpolate< TReal >
, ralab::base::base::utilities::LinearInterpolate< TReal >
, ralab::base::base::utilities::SeqMinus< TReal >
, ralab::base::base::utilities::SeqPlus< TReal >
, ralab::base::filter::utilities::Gauss< TReal >
, ralab::base::filter::utilities::Gauss_1deriv< TReal >
, ralab::base::filter::utilities::Mexican_Hat2< TReal >
, ralab::base::filter::utilities::Mexican_Hat< TReal >
, ralab::base::ms::LocalMinPeakArea< TReal >
, ralab::base::ms::PeakPicker< TReal, TIntegrator >
, ralab::base::ms::SimplePeakArea< TReal >
, ralab::base::ms::SimplePicker< TReal >
, ralab::base::resample::Bin1D
, ralab::base::resample::Bucket1D
, ralab::base::resample::DaCompFunctor< TReal >
, ralab::base::resample::FTMSCompFunctor< TReal >
, ralab::base::resample::PPMCompFunctor< TReal >
, ralab::base::resample::SamplingWith
, ralab::base::resample::SquareRoot< TReal >
, ralab::base::resample::utilities::meanfunctor< T >
, ralab::base::stats::NthPower< N, TReal >
, SetRetentionTime
, UserParamNameIs
, WriteCVParam
- operator*()
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
- operator*=()
: pwiz::chemistry::Formula
- operator+()
: pwiz::identdata::ReaderList
, pwiz::msdata::ReaderList
, pwiz::proteome::ReaderList
, pwiz::tradata::ReaderList
- operator++()
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
- operator+=()
: pwiz::chemistry::Formula
, pwiz::data::FrequencyData
, pwiz::identdata::ReaderList
, pwiz::minimxml::SAXParser::saxstring
, pwiz::msdata::ReaderList
, pwiz::proteome::ReaderList
, pwiz::tradata::ReaderList
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- operator-()
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- operator--()
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- operator-=()
: pwiz::chemistry::Formula
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- operator->()
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
- operator<()
: pwiz::data::Term
, pwiz::proteome::Modification
, pwiz::proteome::ModificationList
, pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- operator<<
: pwiz::analysis::PepxmlRecordReader
, pwiz::chemistry::IsotopeTable
, pwiz::util::IntegerSet::Interval
, pwiz::util::IntegerSet
- operator=()
: pwiz::analysis::FeatureDetectorSimple
, pwiz::analysis::MSDataCache
, pwiz::analysis::PeakFamilyDetectorFT
, pwiz::analysis::PrecursorRecalculatorDefault
, pwiz::analysis::ProteinList_DecoyGenerator
, pwiz::analysis::ProteinList_Filter
, pwiz::analysis::RegionAnalyzer
, pwiz::analysis::SpectrumList_Filter
, pwiz::analysis::SpectrumList_MZWindow
, pwiz::analysis::SpectrumList_PrecursorRecalculator
, pwiz::analysis::SpectrumList_PrecursorRefine
, pwiz::analysis::SpectrumList_ScanSummer
, pwiz::analysis::SpectrumList_Sorter
, pwiz::chemistry::Formula
, pwiz::chemistry::IsotopeCalculator
, pwiz::chemistry::IsotopeEnvelopeEstimator
, pwiz::chemistry::IsotopeTable
, pwiz::data::CVTranslator
, pwiz::data::FrequencyData
, pwiz::data::peakdata::FeatureFile
, pwiz::data::pepxml::Match
, pwiz::data::UserParam
, pwiz::identdata::Serializer_mzIdentML
, pwiz::identdata::Serializer_pepXML
, pwiz::identdata::Serializer_protXML
, pwiz::identdata::Serializer_Text
, pwiz::math::Stats
, pwiz::minimxml::SAXParser::Handler::Attributes
, pwiz::minimxml::SAXParser::saxstring
, pwiz::minimxml::XMLWriter
, pwiz::msdata::BinaryDataEncoder
, pwiz::msdata::LegacyAdapter_Instrument
, pwiz::msdata::LegacyAdapter_Software
, pwiz::msdata::MSData
, pwiz::msdata::Run
, pwiz::msdata::Serializer_MGF
, pwiz::msdata::Serializer_MSn
, pwiz::msdata::Serializer_mzML
, pwiz::msdata::Serializer_mzXML
, pwiz::msdata::SpectrumIterator
, pwiz::msdata::SpectrumListCache
, pwiz::proteome::DigestedPeptide
, pwiz::proteome::Modification
, pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
, pwiz::proteome::ProteinListCache
, pwiz::proteome::ProteomeData
, pwiz::proteome::Reader_FASTA
, pwiz::proteome::Serializer_FASTA
, pwiz::tradata::Serializer_traML
, pwiz::tradata::TraData
, pwiz::util::IterationListenerRegistry
, pwiz::util::SHA1Calculator
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
, ralab::base::resample::Bucket1D
- operator==()
: pwiz::analysis::RegionSIC::Config
, pwiz::analysis::RegionTIC::Config
, pwiz::analysis::SpectrumBinaryData::Config
, pwiz::analysis::TabularConfig
, pwiz::chemistry::Formula
, pwiz::chemistry::MassAbundance
, pwiz::cv::CV
, pwiz::data::CalibrationParameters
, pwiz::data::CVParam
, pwiz::data::ParamContainer
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peak
, pwiz::data::peakdata::PeakData
, pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::PeakFamily
, pwiz::data::peakdata::Scan
, pwiz::data::peakdata::Software
, pwiz::data::peakdata::Software::Parameter
, pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::AnalysisResult
, pwiz::data::pepxml::EnzymaticSearchConstraint
, pwiz::data::pepxml::Match
, pwiz::data::pepxml::MatchData
, pwiz::data::pepxml::ModAminoAcidMass
, pwiz::data::pepxml::ModificationInfo
, pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
, pwiz::data::pepxml::Parameter
, pwiz::data::pepxml::PeptideProphetResult
, pwiz::data::pepxml::Q3RatioResult
, pwiz::data::pepxml::SampleEnzyme
, pwiz::data::pepxml::SearchDatabase
, pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::SearchResult
, pwiz::data::pepxml::SearchSummary
, pwiz::data::pepxml::Specificity
, pwiz::data::pepxml::SpectrumQuery
, pwiz::data::UserParam
, pwiz::identdata::CVIDMatchCVMap
, pwiz::identdata::CVMap
, pwiz::identdata::StringMatchCVMap
, pwiz::minimxml::SAXParser::saxstring
, pwiz::msdata::MZIntensityPair
, pwiz::msdata::Product
, pwiz::msdata::SpectrumIterator
, pwiz::msdata::TimeIntensityPair
, pwiz::proteome::DigestedPeptide
, pwiz::proteome::Digestion::const_iterator
, pwiz::proteome::Modification
, pwiz::proteome::ModificationList
, pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
, pwiz::util::IntegerSet::Iterator
- operator>>
: pwiz::util::IntegerSet::Interval
- operator[]()
: pwiz::chemistry::Formula
, pwiz::math::OrderedPairContainerRef
, pwiz::minimxml::SAXParser::saxstring
, pwiz::proteome::ModificationMap
, pwiz::util::CharIndexedVector< T >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- optimal_buffer_size()
: pwiz::minimxml::basic_charcounter< Ch >
- options
: pwiz::data::pepxml::PeptideProphetSummary
- Orbitrap
: pwiz::data::CalibrationParameters
- order
: pwiz::msdata::Component
, pwiz::msdata::ProcessingMethod
- OrderedPair()
: pwiz::math::OrderedPair
- OrderedPairContainerRef()
: pwiz::math::OrderedPairContainerRef
- ordinate_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
, pwiz::math::MatchedFilter::ProductSpace< X, Y >
, pwiz::math::MatchedFilter::SampledData< space_type >
- Organization()
: pwiz::identdata::Organization
- orientation
: pwiz::analysis::ThresholdFilter
, TestThresholder
- Orientation_LeastIntense
: pwiz::analysis::ThresholdFilter
- Orientation_MostIntense
: pwiz::analysis::ThresholdFilter
- originalResidue
: pwiz::identdata::SubstitutionModification
- origScore
: pwiz::analysis::PepxmlRecordReader::record
- os_
: PrintAttribute
, PrintEventHandler
, pwiz::identdata::DelimWriter
, pwiz::identdata::TextWriter
, pwiz::msdata::TextWriter
, pwiz::proteome::TextWriter
, pwiz::tradata::TextWriter
, pwiz::util::SHA1_ostream
, WriteCVParam
- osDump
: pwiz::analysis::RegionAnalyzer::Config
- otherRelations
: pwiz::cv::CVTermInfo
- outputDirectory
: pwiz::analysis::MSDataAnalyzer::DataInfo
, pwiz::frequency::FrequencyEstimatorPhysicalModel::Config
, pwiz::frequency::TruncatedLorentzianEstimator
- outputIntensityArray
: TestDeisotoper
, TestETDMassFilter
, TestMS2Denoise
, TestThresholder
- outputMZArray
: TestDeisotoper
, TestETDMassFilter
, TestMS2Denoise
, TestThresholder
- outputObserver
: pwiz::minimxml::XMLWriter::Config
- outputSamples()
: pwiz::frequency::TruncatedLorentzian
- overallPvalue
: scoreChain
- override_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
, pwiz::analysis::SpectrumList_ChargeStateCalculator
- overrideExistingChargeState
: TestChargeStateCalculator