Here is a list of all class members with links to the classes they belong to:
- p -
- pages
: pwiz::identdata::BibliographicReference
- Parabola()
: pwiz::math::Parabola
- Param
: pwiz::identdata::DelimReader
- param
: Root
- param2
: Second
- param3
: Second
- Parameter()
: pwiz::data::peakdata::Software::Parameter
, pwiz::data::pepxml::Parameter
- parameterCount()
: ParametrizedCosine
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
, pwiz::frequency::ParametrizedFunction< value_type >
, pwiz::frequency::TruncatedLorentzian
- parameters
: pwiz::data::peakdata::Software
, pwiz::data::pepxml::SearchSummary
- Parameters
: pwiz::frequency::ParameterEstimator
- parameters()
: pwiz::frequency::TruncatedLorentzianParameters
- ParametrizedDerivativeSlice()
: pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >
- ParametrizedFunctionSlice()
: pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >
- ParamGroup()
: pwiz::data::ParamGroup
- paramGroupPtrs
: pwiz::data::ParamContainer
, pwiz::msdata::MSData
- params
: pwiz::analysis::MS2Deisotoper
, pwiz::analysis::MS2NoiseFilter
, pwiz::analysis::PrecursorMassFilter
- parent
: pwiz::identdata::Organization
- parent_file
: pwiz::data::pepxml::DataFilter
- parentIndex
: isotopeChain
- parentsAfter
: TestChargeStateCalculator
- parentsAfter_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsBefore
: TestChargeStateCalculator
- parentsBefore_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsIsA
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentsPartOf
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentTolerance
: pwiz::identdata::SpectrumIdentificationProtocol
- parse()
: pwiz::util::IntegerSet
- parseAttributes()
: pwiz::minimxml::SAXParser::Handler::Attributes
- parseCharacters
: pwiz::minimxml::SAXParser::Handler
- partialDiffOK
: pwiz::data::BaseDiffConfig
- passThreshold
: pwiz::identdata::ProteinDetectionHypothesis
, pwiz::identdata::SpectrumIdentificationItem
- pastMaxIndex
: SelectedIndexPredicate
- path
: pwiz::identdata::CVMap
- pathmask
: TestPathmask
- pathnameArray
: TestPathmask
- pattern
: pwiz::identdata::RegexCVMap
- Peak
: pwiz::analysis::PeakelGrower
, pwiz::analysis::PeakExtractor
, pwiz::analysis::PeakFitter
- peak
: pwiz::analysis::RegionAnalyzer::SpectrumStats
, pwiz::data::peakdata::HandlerPeak
- Peak()
: pwiz::data::peakdata::Peak
, pwiz::frequency::FrequencyEstimator
- peakarea_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakCount
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- peakel
: pwiz::data::peakdata::HandlerPeakel
- Peakel()
: pwiz::data::peakdata::Peakel
- peakelGrower_
: pwiz::analysis::FeatureDetectorPeakel
- peakelGrower_Proximity
: pwiz::analysis::FeatureDetectorPeakel::Config
- PeakelGrower_Proximity()
: pwiz::analysis::PeakelGrower_Proximity
- peakelPicker_
: pwiz::analysis::FeatureDetectorPeakel
- peakelPicker_Basic
: pwiz::analysis::FeatureDetectorPeakel::Config
- PeakelPicker_Basic()
: pwiz::analysis::PeakelPicker_Basic
- peakels
: pwiz::data::peakdata::Feature
- PeakExtractor()
: pwiz::analysis::PeakExtractor
- peakExtractor_
: pwiz::analysis::FeatureDetectorPeakel
- peakFamilies
: pwiz::data::peakdata::Scan
- PeakFamily
: pwiz::analysis::PeakFamilyDetector
, pwiz::data::peakdata::PeakFamily
- peakFamilyDetector
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- PeakFamilyDetectorFT()
: pwiz::analysis::PeakFamilyDetectorFT
- peakFinder_
: pwiz::analysis::PeakExtractor
- peakFinder_SNR
: pwiz::analysis::FeatureDetectorPeakel::Config
- PeakFinder_SNR()
: pwiz::analysis::PeakFinder_SNR
- peakFitter_
: pwiz::analysis::PeakExtractor
- peakFitter_Parabola
: pwiz::analysis::FeatureDetectorPeakel::Config
- PeakFitter_Parabola()
: pwiz::analysis::PeakFitter_Parabola
- PeakIntegrator
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakmass_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakMaxCorrelationAngle
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- PeakPicker()
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peaks
: pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::PeakFamily
, pwiz::frequency::PeakDetectorMatchedFilter::Score
, pwiz::util::MSIHandler::Record
- peaksCount
: pwiz::msdata::SpectrumIdentityFromMzXML
- peakThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- Pep2MzIdent()
: pwiz::identdata::Pep2MzIdent
- peptide
: pwiz::analysis::PepxmlRecordReader::record
- Peptide
: pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- peptide
: pwiz::data::pepxml::SearchHit
- Peptide()
: pwiz::identdata::Peptide
, pwiz::identdata::Serializer_Text
, pwiz::proteome::Peptide
, pwiz::tradata::Peptide
- Peptide::Impl
: pwiz::proteome::ModificationMap
- PeptideEvidence()
: pwiz::identdata::PeptideEvidence
- peptideEvidence
: pwiz::identdata::SequenceCollection
- peptideEvidencePtr
: pwiz::identdata::PeptideHypothesis
, pwiz::identdata::SpectrumIdentificationItem
- peptideHypothesis
: pwiz::identdata::ProteinDetectionHypothesis
- PeptideID_flat()
: pwiz::peptideid::PeptideID_flat
- PeptideID_pepXml()
: pwiz::peptideid::PeptideID_pepXml
- peptideNextAA
: pwiz::data::pepxml::SearchHit
- peptidePrevAA
: pwiz::data::pepxml::SearchHit
- peptideprophet_summary
: pwiz::data::pepxml::AnalysisSummary
- peptideProphetResult
: pwiz::data::pepxml::AnalysisResult
- PeptideProphetResult()
: pwiz::data::pepxml::PeptideProphetResult
- peptidePtr
: pwiz::identdata::PeptideEvidence
, pwiz::identdata::SpectrumIdentificationItem
, pwiz::tradata::Target
, pwiz::tradata::Transition
- peptidePtrs
: pwiz::tradata::TraData
- peptides
: pwiz::identdata::SequenceCollection
- peptideSequence
: pwiz::identdata::Peptide
- peptideTerminus
: pwiz::data::pepxml::AminoAcidModification
- pepxmlfile
: pwiz::analysis::PepxmlRecordReader::Config
- PepxmlRecordReader()
: pwiz::analysis::PepxmlRecordReader
- Person()
: pwiz::identdata::Person
- pick()
: pwiz::analysis::PeakelPicker
, pwiz::analysis::PeakelPicker_Basic
- pimpl
: pwiz::identdata::DelimReader
, pwiz::identdata::MascotReader
, pwiz::identdata::Pep2MzIdent
, pwiz::peptideid::PeptideID::Iterator
, pwiz::peptideid::PeptideID_flat
, pwiz::peptideid::PeptideID_pepXml
, pwiz::util::DefaultTabHandler
, pwiz::util::MSIHandler
, pwiz::util::TabReader
- pixel()
: pwiz::util::Image
- Point()
: pwiz::util::Image::Point
- pointer
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- poisson
: pwiz::analysis::MS2Deisotoper::Config
- polarity
: pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- polarityStringForFilter()
: pwiz::msdata::ChromatogramListBase
- polynomialOrder
: TestData
- popStyle()
: pwiz::minimxml::XMLWriter
- position
: pwiz::data::pepxml::ModAminoAcidMass
, pwiz::minimxml::XMLWriter
- positionNext()
: pwiz::minimxml::XMLWriter
- possible_charges
: TestSpectrumInfo
- post
: pwiz::identdata::PeptideEvidence
- PPM
: pwiz::chemistry::MZTolerance
- ppm_
: ralab::base::resample::PPMCompFunctor< TReal >
- PPMCompFunctor()
: ralab::base::resample::PPMCompFunctor< TReal >
- pre
: pwiz::identdata::PeptideEvidence
- precision
: pwiz::analysis::SpectrumBinaryData::Config
, pwiz::data::BaseDiffConfig
, pwiz::msdata::BinaryDataEncoder::Config
- Precision
: pwiz::msdata::BinaryDataEncoder
- Precision_32
: pwiz::msdata::BinaryDataEncoder
- Precision_64
: pwiz::msdata::BinaryDataEncoder
- precisionOverrides
: pwiz::msdata::BinaryDataEncoder::Config
- precursor
: pwiz::msdata::Chromatogram
- Precursor()
: pwiz::msdata::Precursor
- precursor
: pwiz::tradata::Target
, pwiz::tradata::Transition
- precursor_ion_charge
: pwiz::data::pepxml::MixtureModel
- precursor_mz
: TestSpectrumInfo
- precursorCharge
: TestMS2Denoise
- PrecursorInfo()
: pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::msdata::SpectrumInfo::PrecursorInfo
- precursorList
: pwiz::analysis::SpectrumList_ScanSummer
- precursorMass
: TestMS2Denoise
- PrecursorMassFilter()
: pwiz::analysis::PrecursorMassFilter
- precursorMassType
: pwiz::data::pepxml::SearchSummary
- precursorMZ
: precursorGroup
- precursorMzSet_
: pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- precursorNeutralMass
: pwiz::data::pepxml::SpectrumQuery
- PrecursorRecalculatorDefault()
: pwiz::analysis::PrecursorRecalculatorDefault
- precursors
: pwiz::msdata::Spectrum
, pwiz::msdata::SpectrumInfo
- precursorTol_
: pwiz::analysis::SpectrumList_ScanSummer
- PredicatePtr
: pwiz::analysis::ProteinList_DecoyGenerator
- prediction
: pwiz::tradata::Transition
- prefix()
: pwiz::cv::CVTermInfo
, pwiz::data::OBO
, pwiz::data::Term
- preprocess()
: ParametrizedCosine
- preprocessWithLogarithm
: pwiz::analysis::PeakFinder_SNR::Config
- print_headers()
: pwiz::analysis::PepxmlRecordReader
- PrintAttribute()
: PrintAttribute
- printDifferenceQuotientSequence()
: pwiz::frequency::DerivativeTest::VectorFunction< value_type >
- PrintEventHandler()
: PrintEventHandler
- prior_probability
: pwiz::data::pepxml::MixtureModel
- probability
: pwiz::data::pepxml::PeptideProphetResult
- problem_
: ralab::base::ms::SimplePicker< TReal >
- process()
: pwiz::util::TabReader
- processBatch()
: pwiz::msdata::SpectrumWorkerThreads
- processingInstruction()
: PrintEventHandler
, pwiz::minimxml::SAXParser::Handler
, pwiz::minimxml::XMLWriter
- ProcessingMethod()
: pwiz::msdata::ProcessingMethod
- processingMethods
: pwiz::msdata::DataProcessing
- product
: pwiz::msdata::Chromatogram
, pwiz::tradata::Transition
- products
: pwiz::msdata::Spectrum
- progress()
: CancelProgressCallback
, pwiz::analysis::MSDataAnalyzerDriver::ProgressCallback
, SimpleProgressCallback
- prompt()
: pwiz::util::ClickwrapPrompter
- propertyValues
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- protein()
: FilterWrapper
, pwiz::analysis::PepxmlRecordReader::record
, pwiz::analysis::ProteinList_DecoyGenerator
, pwiz::analysis::ProteinList_Filter
, pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::SearchHit
- Protein
: pwiz::identdata::Serializer_Text
, pwiz::proteome::Protein
- protein()
: pwiz::proteome::ProteinList
, pwiz::proteome::ProteinListCache
, pwiz::proteome::ProteinListSimple
, pwiz::proteome::ProteinListWrapper
- Protein()
: pwiz::tradata::Protein
- protein_descr
: pwiz::peptideid::PeptideID::Record
- ProteinAmbiguityGroup()
: pwiz::identdata::ProteinAmbiguityGroup
- proteinAmbiguityGroup
: pwiz::identdata::ProteinDetectionList
- proteinDescr
: pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::SearchHit
- ProteinDescription
: pwiz::identdata::Serializer_Text
- proteinDetection
: pwiz::identdata::AnalysisCollection
- ProteinDetection()
: pwiz::identdata::ProteinDetection
- proteinDetectionHypothesis
: pwiz::identdata::ProteinAmbiguityGroup
- ProteinDetectionHypothesis()
: pwiz::identdata::ProteinDetectionHypothesis
- ProteinDetectionList()
: pwiz::identdata::ProteinDetectionList
- proteinDetectionListPtr
: pwiz::identdata::AnalysisData
, pwiz::identdata::ProteinDetection
- proteinDetectionProtocol
: pwiz::identdata::AnalysisProtocolCollection
- ProteinDetectionProtocol()
: pwiz::identdata::ProteinDetectionProtocol
- proteinDetectionProtocolPtr
: pwiz::identdata::ProteinDetection
- ProteinList_DecoyGenerator()
: pwiz::analysis::ProteinList_DecoyGenerator
- ProteinList_DecoyGeneratorPredicate_Reversed()
: pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Reversed
- ProteinList_DecoyGeneratorPredicate_Shuffled()
: pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled
- ProteinList_Filter()
: pwiz::analysis::ProteinList_Filter
- ProteinList_FilterPredicate_IdSet()
: pwiz::analysis::ProteinList_FilterPredicate_IdSet
- ProteinList_FilterPredicate_IndexSet()
: pwiz::analysis::ProteinList_FilterPredicate_IndexSet
- ProteinListCache()
: pwiz::proteome::ProteinListCache
- proteinListPtr
: pwiz::proteome::ProteomeData
- ProteinListWrapper()
: pwiz::proteome::ProteinListWrapper
- proteinPtrs
: pwiz::tradata::Peptide
, pwiz::tradata::TraData
- proteins
: pwiz::proteome::ProteinListSimple
- ProteomeData()
: pwiz::proteome::ProteomeData
- ProteomeDataFile()
: pwiz::proteome::ProteomeDataFile
- provider
: pwiz::identdata::IdentData
- Provider()
: pwiz::identdata::Provider
- publication
: pwiz::identdata::BibliographicReference
- publications
: pwiz::tradata::TraData
- publisher
: pwiz::identdata::BibliographicReference
- pushSpectrum()
: pwiz::analysis::SpectrumList_ScanSummer
- pushStyle()
: pwiz::minimxml::XMLWriter
- pvalue()
: pwiz::analysis::Noise