ProteoWizard
|
Implementation of PeptideType from the mzIdentML schema. More...
#include <IdentData.hpp>
Public Member Functions | |
Peptide (const std::string &id="", const std::string &name="") | |
bool | empty () const |
![]() | |
IdentifiableParamContainer (const std::string &id_="", const std::string &name_="") | |
virtual | ~IdentifiableParamContainer () |
![]() | |
CVParam | cvParam (CVID cvid) const |
finds cvid in the container: More... | |
CVParam | cvParamChild (CVID cvid) const |
finds child of cvid in the container: More... | |
std::vector< CVParam > | cvParamChildren (CVID cvid) const |
finds all children of cvid in the container: More... | |
bool | hasCVParam (CVID cvid) const |
returns true iff cvParams contains exact cvid (recursive) More... | |
bool | hasCVParamChild (CVID cvid) const |
returns true iff cvParams contains a child (is_a) of cvid (recursive) More... | |
UserParam | userParam (const std::string &) const |
finds UserParam with specified name More... | |
void | set (CVID cvid, const std::string &value="", CVID units=CVID_Unknown) |
set/add a CVParam (not recursive) More... | |
void | set (CVID cvid, double value, CVID units=CVID_Unknown) |
set/add a CVParam (not recursive) More... | |
void | set (CVID cvid, int value, CVID units=CVID_Unknown) |
set/add a CVParam (not recursive) More... | |
template<typename value_type > | |
void | set (CVID cvid, value_type value, CVID units=CVID_Unknown) |
set/add a CVParam (not recursive) More... | |
bool | empty () const |
returns true iff the element contains no params or param groups More... | |
void | clear () |
clears the collections More... | |
bool | operator== (const ParamContainer &that) const |
returns true iff this and that have the exact same cvParams and userParams More... | |
bool | operator!= (const ParamContainer &that) const |
returns !(this==that) More... | |
template<> | |
void | set (CVID cvid, bool value, CVID units) |
special case for bool (outside the class for gcc 3.4, and inline for msvc) More... | |
Public Attributes | |
std::string | peptideSequence |
std::vector< ModificationPtr > | modification |
std::vector< SubstitutionModificationPtr > | substitutionModification |
![]() | |
std::string | id |
std::string | name |
![]() | |
std::vector< ParamGroupPtr > | paramGroupPtrs |
a collection of references to ParamGroups More... | |
std::vector< CVParam > | cvParams |
a collection of controlled vocabulary terms More... | |
std::vector< UserParam > | userParams |
a collection of uncontrolled user terms More... | |
Implementation of PeptideType from the mzIdentML schema.
One (poly)peptide (a sequence with modifications). The combination of Peptide sequence and modifications must be unique in the file.
Definition at line 368 of file IdentData.hpp.
pwiz::identdata::Peptide::Peptide | ( | const std::string & | id = "" , |
const std::string & | name = "" |
||
) |
|
virtual |
Reimplemented from pwiz::identdata::IdentifiableParamContainer.
std::string pwiz::identdata::Peptide::peptideSequence |
Definition at line 373 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), testConversion(), and testPeptide().
std::vector<ModificationPtr> pwiz::identdata::Peptide::modification |
Definition at line 374 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), testConversion(), and testPeptide().
std::vector<SubstitutionModificationPtr> pwiz::identdata::Peptide::substitutionModification |
Definition at line 375 of file IdentData.hpp.
Referenced by pwiz::identdata::TextWriter::operator()(), and testPeptide().