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| pwiz::data::unimod::BOOST_BITFIELD_EX (Site, PWIZ_API_DECL,(Any)(1<< 0)(NTerminus)(1<< 1)(CTerminus)(1<< 2)(Alanine)(1<< 3)(Cysteine)(1<< 4)(AsparticAcid)(1<< 5)(GlutamicAcid)(1<< 6)(Phenylalanine)(1<< 7)(Glycine)(1<< 8)(Histidine)(1<< 9)(Isoleucine)(1<< 10)(Lysine)(1<< 11)(Leucine)(1<< 12)(Methionine)(1<< 13)(Asparagine)(1<< 14)(Proline)(1<< 15)(Glutamine)(1<< 16)(Arginine)(1<< 17)(Serine)(1<< 18)(Threonine)(1<< 19)(Selenocysteine)(1<< 20)(Valine)(1<< 21)(Tryptophan)(1<< 22)(Tyrosine)(1<< 23)) BOOST_ENUM_EX(Position |
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() Anywhere() AnyNTerminus() AnyCTerminus() | pwiz::data::unimod::ProteinNTerminus (ProteinCTerminus)) BOOST_BITFIELD_EX(Classification |
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() Anywhere() AnyNTerminus() AnyCTerminus()() | pwiz::data::unimod::Any (1<< 0)(Artifact)(1<< 1)(ChemicalDerivative)(1<< 2)(CoTranslational)(1<< 3)(IsotopicLabel)(1<< 4)(Multiple)(1<< 5)(NLinkedGlycosylation)(1<< 6)(NonStandardResidue)(1<< 7)(OLinkedGlycosylation)(1<< 8)(OtherGlycosylation)(1<< 9)(Other)(1<< 10)(PostTranslational)(1<< 11)(PreTranslational)(1<< 12)(Substitution)(1<< 13)(SynthPepProtectGP)(1<< 14)) struct PWIZ_API_DECL Modification |
| a modification from Unimod More...
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PWIZ_API_DECL Site | pwiz::data::unimod::site (char symbol) |
| returns the Site given a one-letter residue code, or: 'x' for Site::Any, 'n' for Site::NTerminus, 'c' for Site::CTerminus More...
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PWIZ_API_DECL Position | pwiz::data::unimod::position (CVID cvid=CVID_Unknown) |
| returns a Position corresponding to one of the following CVIDs: CVID_Unknown: Position::Anywhere MS_modification_specificity_peptide_N_term: Position::AnyNTerminus MS_modification_specificity_peptide_C_term: Position::AnyCTerminus Else: invalid_argument exception More...
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PWIZ_API_DECL const std::vector< Modification > & | pwiz::data::unimod::modifications () |
| the entire list of Unimod modifications More...
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PWIZ_API_DECL std::vector< Modification > | pwiz::data::unimod::modifications (double mass, double tolerance, tribool monoisotopic=true, tribool approved=true, Site site=Site::Any, Position position=Position::Anywhere, Classification classification=Classification::Any, tribool hidden=indeterminate) |
| get a list of modifications by mass and tolerance; More...
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PWIZ_API_DECL const Modification & | pwiz::data::unimod::modification (CVID cvid) |
| find a modification by CVID More...
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PWIZ_API_DECL const Modification & | pwiz::data::unimod::modification (const std::string &title) |
| find a modification by title, e.g. "Phospho" not "Phosphorylation" More...
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