- s -
- sampleEnzyme
: pwiz::data::pepxml::MSMSRunSummary
- samplePtr
: pwiz::identdata::SpectrumIdentificationItem
, pwiz::msdata::Run
- samplePtrs
: pwiz::msdata::MSData
- samples
: pwiz::identdata::AnalysisSampleCollection
, pwiz::math::MatchedFilter::SampledData< space_type >
- scalings
: pwiz::analysis::CwtPeakDetector
- scan
: pwiz::util::MSIHandler::Record
- scanCount
: pwiz::util::MSIHandler::Record
- scanEvent
: pwiz::msdata::SpectrumInfo
- scanEventSet_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
- scanFirst
: pwiz::util::MSIHandler::Record
- scanLast
: pwiz::util::MSIHandler::Record
- scanList
: pwiz::msdata::Spectrum
- scanNumber
: pwiz::data::peakdata::Scan
, pwiz::msdata::SpectrumInfo
, TestSpectrumInfo
- scanNumberRange
: pwiz::analysis::RegionAnalyzer::Config
- scanNumbers
: pwiz::msdata::SpectrumIterator::Config
- scanNumberSet_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- scans
: pwiz::data::peakdata::PeakData
, pwiz::msdata::ScanList
- scanSettingsPtr
: pwiz::msdata::InstrumentConfiguration
- scanSettingsPtrs
: pwiz::msdata::MSData
- scanTimeHigh_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- scanTimeLow_
: pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
- scanWindows
: pwiz::msdata::Scan
- score
: pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::PeakFamily
, pwiz::data::pepxml::Match
- sd_peak_mz
: pwiz::analysis::RegionAnalyzer::Stats
- search_engine
: pwiz::analysis::PepxmlRecordReader
- search_id
: pwiz::data::pepxml::SearchSummary
- search_scores
: pwiz::analysis::PepxmlRecordReader::record
- searchDatabase
: pwiz::data::pepxml::SearchSummary
, pwiz::identdata::Inputs
, pwiz::identdata::SpectrumIdentification
- searchDatabasePtr
: pwiz::identdata::DBSequence
- searchEngine
: pwiz::data::pepxml::SearchSummary
- searchHit
: pwiz::data::pepxml::SearchResult
- searchId
: pwiz::data::pepxml::SearchResult
- searchID
: pwiz::data::pepxml::SearchSummary
- searchNbhdCalculator
: pwiz::data::pepxml::MatchData
- searchResult
: pwiz::data::pepxml::SpectrumQuery
- searchScore
: pwiz::data::pepxml::SearchHit
- searchSummary
: pwiz::data::pepxml::MSMSRunSummary
- searchType
: pwiz::identdata::SpectrumIdentificationProtocol
- second
: Root
- secondHandler_
: RootHandler
- selectedIons
: pwiz::msdata::Precursor
- sense
: pwiz::data::pepxml::Specificity
, pwiz::identdata::PepXMLSpecificity
- sensitivity
: pwiz::data::pepxml::RocDataPoint
- seq
: pwiz::identdata::DBSequence
, pwiz::identdata::dbsequence_p
, pwiz::identdata::seq_p
, pwiz::identdata::sequence_p
- sequence
: pwiz::peptideid::PeptideID::Record
, pwiz::proteome::IPIFASTADatabase::Record
, pwiz::tradata::Peptide
, pwiz::tradata::Protein
, TestFragmentation
, TestModifiedPeptide
, TestPeptide
- sequenceCollection
: pwiz::identdata::IdentData
- sha1_
: pwiz::util::SHA1SymmetricFilter
- sha1Calculator_
: pwiz::msdata::SHA1OutputObserver
- sieve
: pwiz::msdata::SpectrumIterator::Config
- sigma_
: ralab::base::filter::utilities::Gauss< TReal >
, ralab::base::filter::utilities::Gauss_1deriv< TReal >
, ralab::base::filter::utilities::Mexican_Hat2< TReal >
, ralab::base::filter::utilities::Mexican_Hat< TReal >
- sigVal_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simAsSpectra
: pwiz::msdata::Reader::Config
- simplepicker_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- simulatedIntensityRankSum
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedKLs
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- simulatedSSEs
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- sinBx_
: ParametrizedCosine
- singlyChargedFraction
: TestChargeStateCalculator
- siteRegexp
: pwiz::identdata::Enzyme
- size
: pwiz::minimxml::SAXParser::Handler::Attributes
- sizeInDbEntries
: pwiz::data::pepxml::SearchDatabase
- sizeOfResidues
: pwiz::data::pepxml::SearchDatabase
- smoothedintensity_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- smoothwith_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- software
: pwiz::data::peakdata::PeakData
- softwareName
: pwiz::identdata::AnalysisSoftware
- softwarePtr
: pwiz::msdata::InstrumentConfiguration
, pwiz::msdata::ProcessingMethod
, pwiz::tradata::Prediction
, pwiz::tradata::RetentionTime
- softwarePtrs
: pwiz::msdata::MSData
, pwiz::tradata::TraData
- sort
: pwiz::identdata::Serializer_Text::Config
- sortBy
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- source
: pwiz::data::peakdata::Software
- sourceFile
: pwiz::identdata::Inputs
- sourceFilename
: pwiz::analysis::MSDataAnalyzer::DataInfo
, pwiz::data::peakdata::PeakData
- sourceFilePosition
: pwiz::msdata::ChromatogramIdentity
, pwiz::msdata::SpectrumIdentity
- sourceFilePositionForBinarySpectrumData
: pwiz::msdata::SpectrumIdentityFromXML
- sourceFilePtr
: pwiz::msdata::Precursor
, pwiz::msdata::Scan
, pwiz::msdata::Spectrum
- sourceFilePtrs
: pwiz::msdata::FileDescription
, pwiz::msdata::ScanSettings
- specificity
: pwiz::data::pepxml::SampleEnzyme
- specificityRules
: pwiz::identdata::SearchModification
- spectra
: pwiz::msdata::SpectrumListSimple
- spectraData
: pwiz::identdata::Inputs
- spectraDataPtr
: pwiz::identdata::SpectrumIdentificationResult
- spectrum
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::pepxml::SpectrumQuery
, pwiz::msdata::SpectrumListCache::CacheEntry
- spectrumCache_
: pwiz::msdata::SpectrumListCache
- spectrumID
: pwiz::identdata::SpectrumIdentificationResult
, pwiz::msdata::Precursor
, pwiz::msdata::Scan
- spectrumIdentification
: pwiz::identdata::AnalysisCollection
- spectrumIdentificationItem
: pwiz::identdata::SpectrumIdentificationResult
- spectrumIdentificationItemPtr
: pwiz::identdata::PeptideHypothesis
- spectrumIdentificationList
: pwiz::identdata::AnalysisData
- spectrumIdentificationListPtr
: pwiz::identdata::SpectrumIdentification
- spectrumIdentificationProtocol
: pwiz::identdata::AnalysisProtocolCollection
- spectrumIdentificationProtocolPtr
: pwiz::identdata::SpectrumIdentification
- spectrumIdentificationResult
: pwiz::identdata::SpectrumIdentificationList
- spectrumIdentities
: pwiz::analysis::SpectrumList_ScanSummer
- spectrumIDFormat
: pwiz::identdata::SpectraData
- spectrumListPtr
: pwiz::msdata::Run
- spectrumQueries
: pwiz::data::pepxml::MSMSRunSummary
- spectrumQuery
: pwiz::data::pepxml::Match
- spotID
: pwiz::msdata::SpectrumIdentity
- sprank
: pwiz::analysis::PepxmlRecordReader::record
- spscore
: pwiz::analysis::PepxmlRecordReader::record
- srmAsSpectra
: pwiz::msdata::Reader::Config
- standardDeviation
: pwiz::analysis::Noise
- start
: pwiz::analysis::Peak
, pwiz::identdata::PeptideEvidence
- start_
: pwiz::util::Timer
- startScan
: pwiz::data::pepxml::SpectrumQuery
- startTimeStamp
: pwiz::msdata::Run
- stop
: pwiz::analysis::Peak
- subSamples
: pwiz::identdata::Sample
- substitutionModification
: pwiz::identdata::Peptide
- sum_peak_intensity
: pwiz::analysis::RegionAnalyzer::Stats
- sum_sumIntensity
: pwiz::analysis::RegionAnalyzer::Stats
- sumIntensity
: pwiz::analysis::RegionAnalyzer::SpectrumStats
- summ_
: ralab::base::resample::SamplingWith
- summaryXML
: pwiz::data::pepxml::MSMSPipelineAnalysis
- sumRanks
: scoreChain
- sw_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- symbol
: pwiz::chemistry::detail::Element
, pwiz::chemistry::Element::Info::Record
, pwiz::data::pepxml::AminoAcidModification
, pwiz::proteome::AminoAcid::Info::Record
, TestAminoAcid