Here is a list of all class members with links to the classes they belong to:
- d -
- DaCompFunctor()
: ralab::base::resample::DaCompFunctor< TReal >
- data()
: pwiz::chemistry::Formula
, pwiz::data::FrequencyData
, pwiz::data::peakdata::Peak
- Data
: pwiz::frequency::ParameterEstimator
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- data()
: pwiz::minimxml::SAXParser::saxstring
, pwiz::msdata::BinaryDataArray
, pwiz::msdata::SpectrumInfo
- data_
: pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- data_type
: pwiz::math::Stats
- databaseFilters
: pwiz::identdata::SpectrumIdentificationProtocol
- databaseName
: pwiz::data::pepxml::SearchDatabase
, pwiz::identdata::SearchDatabase
- databaseReleaseIdentifier
: pwiz::data::pepxml::SearchDatabase
- databaseTranslation
: pwiz::identdata::SpectrumIdentificationProtocol
- dataCollection
: pwiz::identdata::IdentData
- dataFilters
: pwiz::data::pepxml::DatasetDerivation
- DataInfo()
: pwiz::analysis::MSDataAnalyzer::DataInfo
- DataProcessing()
: pwiz::msdata::DataProcessing
- dataProcessingPtr()
: MyBase
, pwiz::msdata::BinaryDataArray
, pwiz::msdata::Chromatogram
, pwiz::msdata::ChromatogramList
, pwiz::msdata::ChromatogramListBase
, pwiz::msdata::ChromatogramListSimple
, pwiz::msdata::Spectrum
, pwiz::msdata::SpectrumList
, pwiz::msdata::SpectrumListBase
, pwiz::msdata::SpectrumListSimple
, pwiz::msdata::SpectrumListWrapper
- dataProcessingPtrs
: pwiz::msdata::MSData
- datasetDerivation
: pwiz::data::pepxml::MSMSPipelineAnalysis
- dataSize
: pwiz::msdata::SpectrumInfo
- date
: pwiz::data::pepxml::MSMSPipelineAnalysis
- Datum
: pwiz::frequency::ParameterEstimator
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
- DBSequence()
: pwiz::identdata::DBSequence
- dbsequence_p()
: pwiz::identdata::dbsequence_p
- dbSequencePtr
: pwiz::identdata::PeptideEvidence
, pwiz::identdata::ProteinDetectionHypothesis
- dbSequences
: pwiz::identdata::SequenceCollection
- decimalRatio
: pwiz::data::pepxml::Q3RatioResult
- decode()
: pwiz::msdata::BinaryDataEncoder
- decoyPrefix()
: pwiz::analysis::ProteinList_DecoyGenerator::Predicate
- decoyPrefix_
: pwiz::analysis::ProteinList_DecoyGenerator::Predicate
- def
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- defaultArrayLength
: pwiz::msdata::Chromatogram
, pwiz::msdata::Spectrum
- defaultArrayLengthSet_
: pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet
- defaultChargeMax_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultChargeMin_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultInstrumentConfigurationPtr
: pwiz::msdata::Run
- defaultIsolationWidth_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- defaultMaxCharge
: TestChargeStateCalculator
- defaultMinCharge
: TestChargeStateCalculator
- DefaultReaderList()
: pwiz::identdata::DefaultReaderList
, pwiz::msdata::DefaultReaderList
, pwiz::proteome::DefaultReaderList
, pwiz::tradata::DefaultReaderList
- defaultSourceFilePtr
: pwiz::msdata::Run
- DefaultTabHandler()
: pwiz::util::DefaultTabHandler
- defBreak()
: ralab::base::resample::Convert2Dense
- define()
: pwiz::msdata::Component
- delegate
: pwiz::minimxml::SAXParser::Handler::Status
- Delegate
: pwiz::minimxml::SAXParser::Handler::Status
- delim
: pwiz::analysis::PepxmlRecordReader::Config
- delim_
: pwiz::identdata::DelimWriter
- delim_equal()
: pwiz::analysis::TabularConfig
- Delimiter
: pwiz::analysis::TabularConfig
- delimiter_
: pwiz::analysis::TabularConfig
- Delimiter_Comma
: pwiz::analysis::TabularConfig
- Delimiter_FixedWidth
: pwiz::analysis::TabularConfig
- Delimiter_Space
: pwiz::analysis::TabularConfig
- Delimiter_Tab
: pwiz::analysis::TabularConfig
- DelimReader()
: pwiz::identdata::DelimReader
- DelimWriter()
: pwiz::identdata::DelimWriter
- delta
: pwiz::analysis::PepxmlRecordReader::record
- deltaAvgMass
: TestModification
- deltacn
: pwiz::analysis::PepxmlRecordReader::record
- deltacnstar
: pwiz::analysis::PepxmlRecordReader::record
- deltaMonoMass
: TestModification
- dependant
: pwiz::identdata::CVMap
- depth_
: pwiz::identdata::TextWriter
, pwiz::msdata::TextWriter
, pwiz::proteome::TextWriter
, pwiz::tradata::TextWriter
- dereference()
: pwiz::peptideid::PeptideID::Iterator
, pwiz::peptideid::PeptideID::IteratorInternal
- describe()
: pwiz::analysis::ChromatogramDataFilter
, pwiz::analysis::MS2Deisotoper
, pwiz::analysis::MS2NoiseFilter
, pwiz::analysis::PrecursorMassFilter
, pwiz::analysis::SpectrumDataFilter
, pwiz::analysis::ThresholdFilter
- description()
: pwiz::analysis::analyzer_strings< analyzer_type >
, pwiz::analysis::analyzer_strings< MetadataReporter >
, pwiz::analysis::analyzer_strings< RegionSIC >
, pwiz::analysis::analyzer_strings< RegionSlice >
, pwiz::analysis::analyzer_strings< RegionTIC >
, pwiz::analysis::analyzer_strings< RunSummary >
, pwiz::analysis::analyzer_strings< SpectrumBinaryData >
, pwiz::analysis::analyzer_strings< SpectrumTable >
, pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::DataFilter
, pwiz::data::pepxml::SampleEnzyme
, pwiz::proteome::Protein
- detailLevel_
: HasBinaryDataPredicate
- detect()
: pwiz::analysis::CwtPeakDetector
, pwiz::analysis::FeatureDetector
, pwiz::analysis::FeatureDetectorPeakel
, pwiz::analysis::FeatureDetectorSimple
, pwiz::analysis::LocalMaximumPeakDetector
, pwiz::analysis::PeakDetector
, pwiz::analysis::PeakFamilyDetector
, pwiz::analysis::PeakFamilyDetectorFT
- detectionRadius()
: pwiz::frequency::PeakDetectorNaive
- detector()
: pwiz::msdata::ComponentList
, pwiz::msdata::LegacyAdapter_Instrument
- Diff()
: pwiz::data::Diff< object_type, config_type, object_result_type >
- diff_
: ralab::base::resample::SamplingWith
- DiffConfig()
: pwiz::identdata::DiffConfig
, pwiz::msdata::DiffConfig
, pwiz::proteome::DiffConfig
, pwiz::tradata::DiffConfig
- difference_type
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- differenceQuotient()
: pwiz::frequency::DerivativeTest::VectorFunction< value_type >
- DigestedPeptide()
: pwiz::proteome::DigestedPeptide
- Digestion
: pwiz::proteome::Digestion::const_iterator
, pwiz::proteome::Digestion
- Digestion::Impl
: pwiz::proteome::Digestion::const_iterator
- disambiguateCleavageAgentRegex()
: pwiz::proteome::Digestion
- distribution()
: pwiz::chemistry::IsotopeCalculator
, pwiz::chemistry::IsotopeTable
- distribution_point
: pwiz::data::pepxml::PeptideProphetSummary
- domain
: pwiz::math::MatchedFilter::SampledData< space_type >
- domain_type
: pwiz::math::MatchedFilter::SampledData< space_type >
- domainWidth()
: pwiz::math::MatchedFilter::SampledData< space_type >
- done()
: pwiz::analysis::ProteinList_Filter::Predicate
, pwiz::analysis::ProteinList_FilterPredicate_IdSet
, pwiz::analysis::ProteinList_FilterPredicate_IndexSet
, pwiz::analysis::SpectrumList_Filter::Predicate
, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
, pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
- Done
: pwiz::minimxml::SAXParser::Handler::Status
- done
: Reader1::Config
, Reader1::ReaderConfig
, Reader2::Config
, Reader2::ReaderConfig
, SelectedIndexPredicate
- dot
: pwiz::math::MatchedFilter::Correlation< Y >
- dot_product
: pwiz::analysis::PepxmlRecordReader::record
- dp()
: ParametrizedCosine
, pwiz::frequency::ParametrizedFunction< value_type >
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
, pwiz::frequency::TruncatedLorentzian
, pwiz::msdata::ChromatogramListSimple
, pwiz::msdata::SpectrumListSimple
- dp2()
: ParametrizedCosine
, pwiz::frequency::ParametrizedFunction< value_type >
, pwiz::frequency::ParametrizedFunction< value_type >::ErrorFunction
, pwiz::frequency::TruncatedLorentzian
- dp_
: pwiz::msdata::ChromatogramListBase
, pwiz::msdata::SpectrumListBase
, pwiz::msdata::SpectrumListWrapper
- driftTimeToCCS()
: pwiz::analysis::SpectrumList_IonMobility
, pwiz::msdata::detail::SpectrumList_Agilent
- dummy
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
- dumpRegionData
: pwiz::analysis::RegionAnalyzer::Config
- dx()
: pwiz::math::MatchedFilter::SampledData< space_type >