ProteoWizard
Functions
pwiz::identdata::IO Namespace Reference

Functions

PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const CV &cv)
 
PWIZ_API_DECL void read (std::istream &is, CV &cv)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const UserParam &userParam)
 
PWIZ_API_DECL void read (std::istream &is, UserParam &userParam)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const CVParam &cv)
 
PWIZ_API_DECL void read (std::istream &is, CVParam &cv)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Identifiable &it)
 
PWIZ_API_DECL void read (std::istream &is, Identifiable &it)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const IdentifiableParamContainer &it)
 
PWIZ_API_DECL void read (std::istream &is, IdentifiableParamContainer &it)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ContactRole &contactRole)
 
PWIZ_API_DECL void read (std::istream &writer, ContactRole &contactRole)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Provider &provider)
 
PWIZ_API_DECL void read (std::istream &writer, Provider &provider)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectrumIdentification &si)
 
PWIZ_API_DECL void read (std::istream &writer, SpectrumIdentification &si)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const IonType &ionType)
 
PWIZ_API_DECL void read (std::istream &writer, IonType &ionType)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Measure &measure)
 
PWIZ_API_DECL void read (std::istream &writer, Measure &measure)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Sample &sample)
 
PWIZ_API_DECL void read (std::istream &writer, Sample &sample)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Person &cp)
 
PWIZ_API_DECL void read (std::istream &writer, Person &cp)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Organization &cp)
 
PWIZ_API_DECL void read (std::istream &writer, Organization &cp)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SearchModification &sm)
 
PWIZ_API_DECL void read (std::istream &is, SearchModification &sm)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Filter &filter)
 
PWIZ_API_DECL void read (std::istream &is, Filter &filter)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const TranslationTable &tt)
 
PWIZ_API_DECL void read (std::istream &is, TranslationTable &tt)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const DatabaseTranslation &dt)
 
PWIZ_API_DECL void read (std::istream &is, DatabaseTranslation &dt)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectrumIdentificationProtocol &sip)
 
PWIZ_API_DECL void read (std::istream &is, SpectrumIdentificationProtocol &sip)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ProteinDetectionProtocol &pdp)
 
PWIZ_API_DECL void read (std::istream &is, ProteinDetectionProtocol &pdp)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ProteinDetection &pd)
 
PWIZ_API_DECL void read (std::istream &is, ProteinDetection &pd)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AnalysisCollection &ac)
 
PWIZ_API_DECL void read (std::istream &is, AnalysisCollection &ac)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Enzyme &ez)
 
PWIZ_API_DECL void read (std::istream &is, Enzyme &ez)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Enzymes &ez)
 
PWIZ_API_DECL void read (std::istream &is, Enzymes &ez)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Residue &r)
 
PWIZ_API_DECL void read (std::istream &is, Residue &r)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AmbiguousResidue &ar)
 
PWIZ_API_DECL void read (std::istream &is, AmbiguousResidue &ar)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const MassTable &mt)
 
PWIZ_API_DECL void read (std::istream &is, MassTable &mt)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AnalysisProtocolCollection &apc)
 
PWIZ_API_DECL void read (std::istream &is, AnalysisProtocolCollection &apc)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectraData &sd)
 
PWIZ_API_DECL void read (std::istream &is, SpectraData &sd)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SourceFile &sf)
 
PWIZ_API_DECL void read (std::istream &is, SourceFile &sf)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SearchDatabase &sd)
 
PWIZ_API_DECL void read (std::istream &is, SearchDatabase &sd)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Inputs &inputs)
 
PWIZ_API_DECL void read (std::istream &is, Inputs &inputs)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const FragmentArray &fa)
 
PWIZ_API_DECL void read (std::istream &is, FragmentArray &fa)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectrumIdentificationItem &sir)
 
PWIZ_API_DECL void read (std::istream &is, SpectrumIdentificationItem &sir)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const PeptideHypothesis &ph)
 
PWIZ_API_DECL void read (std::istream &is, PeptideHypothesis &ph)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ProteinDetectionHypothesis &pdh)
 
PWIZ_API_DECL void read (std::istream &is, ProteinDetectionHypothesis &pdh)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ProteinAmbiguityGroup &pag)
 
PWIZ_API_DECL void read (std::istream &is, ProteinAmbiguityGroup &pag)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectrumIdentificationList &sil, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void read (std::istream &is, SpectrumIdentificationList &sil, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SpectrumIdentificationResult &sir)
 
PWIZ_API_DECL void read (std::istream &is, SpectrumIdentificationResult &sir)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const ProteinDetectionList &pdl)
 
PWIZ_API_DECL void read (std::istream &is, ProteinDetectionList &pdl)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AnalysisData &pdl, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void read (std::istream &is, AnalysisData &pdl, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const BibliographicReference &bibliographicReference)
 
PWIZ_API_DECL void read (std::istream &is, BibliographicReference &bibliographicReference)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const DataCollection &dataCollection, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void read (std::istream &is, DataCollection &dataCollection, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0, AnalysisDataFlag analysisDataFlag=ReadAnalysisData)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AnalysisSoftware &analysisSoftware)
 
PWIZ_API_DECL void read (std::istream &is, AnalysisSoftware &analysisSoftware)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const DBSequence &dbSequence)
 
PWIZ_API_DECL void read (std::istream &is, DBSequence &dbSequence)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Peptide &peptide)
 
PWIZ_API_DECL void read (std::istream &is, Peptide &peptide)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const PeptideEvidence &pe)
 
PWIZ_API_DECL void read (std::istream &is, PeptideEvidence &pe)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const Modification &mod)
 
PWIZ_API_DECL void read (std::istream &is, Modification &mod)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SubstitutionModification &sm)
 
PWIZ_API_DECL void read (std::istream &is, SubstitutionModification &sm)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const SequenceCollection &sc, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void read (std::istream &is, SequenceCollection &sc, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const AnalysisSampleCollection &asc)
 
PWIZ_API_DECL void read (std::istream &is, AnalysisSampleCollection &asc)
 
PWIZ_API_DECL void write (minimxml::XMLWriter &writer, const IdentData &identdata, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0)
 
PWIZ_API_DECL void read (std::istream &is, IdentData &identdata, const pwiz::util::IterationListenerRegistry *iterationListenerRegistry=0, SequenceCollectionFlag sequenceCollectionFlag=ReadSequenceCollection, AnalysisDataFlag analysisDataFlag=ReadAnalysisData)
 

Function Documentation

§ write() [1/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const CV cv 
)

§ read() [1/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
CV cv 
)

§ write() [2/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const UserParam userParam 
)

§ read() [2/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
UserParam userParam 
)

§ write() [3/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const CVParam cv 
)

§ read() [3/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
CVParam cv 
)

§ write() [4/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Identifiable it 
)

§ read() [4/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Identifiable it 
)

§ write() [5/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const IdentifiableParamContainer it 
)

§ read() [5/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
IdentifiableParamContainer it 
)

§ write() [6/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ContactRole contactRole 
)

§ read() [6/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
ContactRole contactRole 
)

§ write() [7/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Provider provider 
)

§ read() [7/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
Provider provider 
)

§ write() [8/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectrumIdentification si 
)

§ read() [8/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
SpectrumIdentification si 
)

§ write() [9/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const IonType ionType 
)

§ read() [9/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
IonType ionType 
)

§ write() [10/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Measure measure 
)

§ read() [10/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
Measure measure 
)

§ write() [11/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Sample sample 
)

§ read() [11/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
Sample sample 
)

§ write() [12/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Person cp 
)

§ read() [12/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
Person cp 
)

§ write() [13/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Organization cp 
)

§ read() [13/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  writer,
Organization cp 
)

§ write() [14/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SearchModification sm 
)

§ read() [14/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SearchModification sm 
)

§ write() [15/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Filter filter 
)

§ read() [15/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Filter filter 
)

§ write() [16/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const TranslationTable tt 
)

§ read() [16/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
TranslationTable tt 
)

§ write() [17/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const DatabaseTranslation dt 
)

§ read() [17/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
DatabaseTranslation dt 
)

§ write() [18/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectrumIdentificationProtocol sip 
)

§ read() [18/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SpectrumIdentificationProtocol sip 
)

§ write() [19/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ProteinDetectionProtocol pdp 
)

§ read() [19/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
ProteinDetectionProtocol pdp 
)

§ write() [20/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ProteinDetection pd 
)

§ read() [20/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
ProteinDetection pd 
)

§ write() [21/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AnalysisCollection ac 
)

§ read() [21/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AnalysisCollection ac 
)

§ write() [22/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Enzyme ez 
)

§ read() [22/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Enzyme ez 
)

§ write() [23/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Enzymes ez 
)

§ read() [23/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Enzymes ez 
)

§ write() [24/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Residue r 
)

§ read() [24/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Residue r 
)

§ write() [25/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AmbiguousResidue ar 
)

§ read() [25/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AmbiguousResidue ar 
)

§ write() [26/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const MassTable mt 
)

§ read() [26/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
MassTable mt 
)

§ write() [27/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AnalysisProtocolCollection apc 
)

§ read() [27/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AnalysisProtocolCollection apc 
)

§ write() [28/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectraData sd 
)

§ read() [28/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SpectraData sd 
)

§ write() [29/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SourceFile sf 
)

§ read() [29/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SourceFile sf 
)

§ write() [30/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SearchDatabase sd 
)

§ read() [30/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SearchDatabase sd 
)

§ write() [31/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Inputs inputs 
)

§ read() [31/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Inputs inputs 
)

§ write() [32/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const FragmentArray fa 
)

§ read() [32/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
FragmentArray fa 
)

§ write() [33/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectrumIdentificationItem sir 
)

§ read() [33/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SpectrumIdentificationItem sir 
)

§ write() [34/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const PeptideHypothesis ph 
)

§ read() [34/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
PeptideHypothesis ph 
)

§ write() [35/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ProteinDetectionHypothesis pdh 
)

§ read() [35/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
ProteinDetectionHypothesis pdh 
)

§ write() [36/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ProteinAmbiguityGroup pag 
)

§ read() [36/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
ProteinAmbiguityGroup pag 
)

§ write() [37/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectrumIdentificationList sil,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ read() [37/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SpectrumIdentificationList sil,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ write() [38/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SpectrumIdentificationResult sir 
)

§ read() [38/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SpectrumIdentificationResult sir 
)

§ write() [39/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const ProteinDetectionList pdl 
)

§ read() [39/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
ProteinDetectionList pdl 
)

§ write() [40/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AnalysisData pdl,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ read() [40/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AnalysisData pdl,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ write() [41/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const BibliographicReference bibliographicReference 
)

§ read() [41/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
BibliographicReference bibliographicReference 
)

§ write() [42/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const DataCollection dataCollection,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ read() [42/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
DataCollection dataCollection,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0,
AnalysisDataFlag  analysisDataFlag = ReadAnalysisData 
)

§ write() [43/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AnalysisSoftware analysisSoftware 
)

§ read() [43/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AnalysisSoftware analysisSoftware 
)

§ write() [44/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const DBSequence dbSequence 
)

§ read() [44/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
DBSequence dbSequence 
)

§ write() [45/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Peptide peptide 
)

§ read() [45/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Peptide peptide 
)

§ write() [46/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const PeptideEvidence pe 
)

§ read() [46/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
PeptideEvidence pe 
)

§ write() [47/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const Modification mod 
)

§ read() [47/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
Modification mod 
)

§ write() [48/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SubstitutionModification sm 
)

§ read() [48/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SubstitutionModification sm 
)

§ write() [49/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const SequenceCollection sc,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ read() [49/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
SequenceCollection sc,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ write() [50/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const AnalysisSampleCollection asc 
)

§ read() [50/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
AnalysisSampleCollection asc 
)

§ write() [51/51]

PWIZ_API_DECL void pwiz::identdata::IO::write ( minimxml::XMLWriter writer,
const IdentData identdata,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0 
)

§ read() [51/51]

PWIZ_API_DECL void pwiz::identdata::IO::read ( std::istream &  is,
IdentData identdata,
const pwiz::util::IterationListenerRegistry iterationListenerRegistry = 0,
SequenceCollectionFlag  sequenceCollectionFlag = ReadSequenceCollection,
AnalysisDataFlag  analysisDataFlag = ReadAnalysisData 
)