Here is a list of all class members with links to the classes they belong to:
- m -
- m_block
: CSHA1
- m_buffer
: CSHA1
- m_by
: ralab::base::base::utilities::SeqMinus< TReal >
, ralab::base::base::utilities::SeqPlus< TReal >
- m_count
: CSHA1
- m_digest
: CSHA1
- m_from
: ralab::base::base::utilities::SeqMinus< TReal >
, ralab::base::base::utilities::SeqPlus< TReal >
- m_ions
: pwiz::analysis::PepxmlRecordReader::record
- m_itr
: pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
- m_reserved0
: CSHA1
- m_reserved1
: CSHA1
- m_state
: CSHA1
- m_workspace
: CSHA1
- magnitude
: TestDatum
- MagnitudeLorentzian()
: pwiz::frequency::MagnitudeLorentzian
- magnitudeSample()
: pwiz::data::FrequencyData
- Major()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- makeDelimitedListString()
: pwiz::identdata::TextWriter
- makeDelimitedRefListString()
: pwiz::identdata::TextWriter
- makeMS2_
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- managemem
: pwiz::minimxml::SAXParser::Handler::Attributes
- manufacturer()
: pwiz::msdata::LegacyAdapter_Instrument
- manufacturerAndModel()
: pwiz::msdata::LegacyAdapter_Instrument
- Map
: pwiz::chemistry::Formula
- mapped_type
: pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- MascotReader()
: pwiz::identdata::MascotReader
- mass
: pwiz::chemistry::detail::Isotope
, pwiz::chemistry::MassAbundance
, pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::ModAminoAcidMass
, pwiz::identdata::Residue
, pwiz::util::MSIHandler::Record
- mass_
: ralab::base::resample::FTMSCompFunctor< TReal >
- MassAbundance()
: pwiz::chemistry::MassAbundance
- massAnalyzerType
: pwiz::msdata::SpectrumInfo
- massAnalyzerTypeAbbreviation()
: pwiz::msdata::SpectrumInfo
- massDelta
: pwiz::identdata::SearchModification
- massDeviation
: pwiz::data::pepxml::Match
- massDiff
: pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::SearchHit
- massNeutron
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- MassTable()
: pwiz::identdata::MassTable
- massTable
: pwiz::identdata::SpectrumIdentificationProtocol
- massTablePtr
: pwiz::identdata::SpectrumIdentificationItem
- Match()
: pwiz::data::pepxml::Match
- match()
: pwiz::identdata::RegexCVMap
- MatchData()
: pwiz::data::pepxml::MatchData
- matches
: pwiz::data::pepxml::MatchData
- matchingTolerance
: pwiz::analysis::MS2Deisotoper::Config
, pwiz::analysis::PrecursorMassFilter::Config
, TestETDMassFilter
- matchName()
: pwiz::minimxml::SAXParser::Handler::Attributes::attribute
- matrix_type
: pwiz::math::Stats
- max
: pwiz::analysis::RegionAnalyzer::SpectrumStats
, pwiz::data::FrequencyData
- MAX_ID
: pwiz::data::Term
- max_num_items
: pwiz::util::mru_list< Item, KeyExtractor >
- max_size()
: pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- maxCharge
: pwiz::analysis::MS2Deisotoper::Config
, pwiz::analysis::PeakelPicker_Basic::Config
, TestChargeStateCalculator
- maxCharge_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
, pwiz::analysis::SpectrumList_ChargeStateCalculator
- maximumLength
: pwiz::proteome::Digestion::Config
- maximumMissedCleavages
: pwiz::proteome::Digestion::Config
- maxIntensity
: pwiz::data::peakdata::Peakel
- maxIsotopePeaks
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- maxKnownCharge
: TestChargeStateCalculator
- maxKnownCharge_
: pwiz::analysis::SpectrumList_ChargeStateCalculator
- maxMultipleCharge
: TestChargeStateCalculator
- maxNumberPeaks
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- maxnumbersofpeaks_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- maxNumInternalCleavages
: pwiz::data::pepxml::EnzymaticSearchConstraint
- md
: TestModifiedPeptide
- mean
: pwiz::analysis::Noise
, pwiz::data::FrequencyData
, pwiz::math::Stats
- mean_peak_mz
: pwiz::analysis::RegionAnalyzer::Stats
- meanOuterProduct()
: pwiz::math::Stats
- meanSquare()
: pwiz::data::FrequencyData
- Measure()
: pwiz::identdata::Measure
- measurePtr
: pwiz::identdata::FragmentArray
- median
: pwiz::util::MSIHandler::Record
- MemoryIndex()
: pwiz::data::MemoryIndex
- MemoryMRUCache()
: pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
- message
: pwiz::util::IterationListener::UpdateMessage
- Mexican_Hat()
: ralab::base::filter::utilities::Mexican_Hat< TReal >
- Mexican_Hat2()
: ralab::base::filter::utilities::Mexican_Hat2< TReal >
- mextend()
: ralab::base::ms::LocalMinPeakArea< TReal >
- midInitials
: pwiz::identdata::Person
- min_prob
: pwiz::data::pepxml::ErrorPoint
, pwiz::data::pepxml::PeptideProphetSummary
, pwiz::data::pepxml::RocDataPoint
- minCharge
: pwiz::analysis::MS2Deisotoper::Config
, pwiz::analysis::PeakelPicker_Basic::Config
, TestChargeStateCalculator
- minCharge_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
, pwiz::analysis::SpectrumList_ChargeStateCalculator
- minDistance
: pwiz::identdata::Enzyme
- mine_
: pwiz::data::diff_impl::Same< object_type, config_type >
, pwiz::data::diff_impl::SameDeep< object_type, config_type >
- minimumLength
: pwiz::proteome::Digestion::Config
- minimumSpecificity
: pwiz::proteome::Digestion::Config
- minIsotopePeaks
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- minMonoisotopicPeakelSize
: pwiz::analysis::PeakelPicker_Basic::Config
- minMultipleCharge
: TestChargeStateCalculator
- minNumberPeaks
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- minNumTermini
: pwiz::data::pepxml::EnzymaticSearchConstraint
- Minor()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- minPeakelCount
: pwiz::analysis::PeakelPicker_Basic::Config
- minSnr_
: pwiz::analysis::CwtPeakDetector
- minSpace
: pwiz::data::pepxml::Specificity
- missedCleavages
: pwiz::identdata::Enzyme
, pwiz::proteome::DigestedPeptide
- missedCleavages_
: pwiz::proteome::DigestedPeptide
- mixture_model
: pwiz::data::pepxml::PeptideProphetSummary
- ModAminoAcidMass()
: pwiz::data::pepxml::ModAminoAcidMass
- modAminoAcidMass
: pwiz::data::pepxml::ModificationInfo
- Mode
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- mode()
: pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
, pwiz::proteome::ProteinListCache
- mode_
: pwiz::analysis::SpectrumList_3D
, pwiz::analysis::SpectrumList_IonMobility
, pwiz::analysis::SpectrumList_PeakPicker
, pwiz::analysis::SpectrumList_ZeroSamplesFilter
, pwiz::msdata::MemoryMRUCache< PtrType, KeyExtractor >
, pwiz::proteome::ProteinListCache
- Mode_AddMissingZeros
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- Mode_RemoveExtraZeros
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- model()
: pwiz::msdata::LegacyAdapter_Instrument
- model_1_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_1_pos_distr
: pwiz::data::pepxml::DistributionPoint
- model_2_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_2_pos_distr
: pwiz::data::pepxml::DistributionPoint
- model_3_neg_distr
: pwiz::data::pepxml::DistributionPoint
- model_3_pos_distr
: pwiz::data::pepxml::DistributionPoint
- Modification()
: pwiz::identdata::Modification
- modification
: pwiz::identdata::Peptide
- Modification()
: pwiz::proteome::Modification
, pwiz::tradata::Modification
- ModificationInfo()
: pwiz::data::pepxml::ModificationInfo
- modificationInfo
: pwiz::data::pepxml::SearchHit
- ModificationList()
: pwiz::proteome::ModificationList
- ModificationMap()
: pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
- modificationParams
: pwiz::identdata::SpectrumIdentificationProtocol
- modifications()
: pwiz::proteome::Peptide
, pwiz::tradata::Peptide
- modifiedPeptide
: pwiz::data::pepxml::ModificationInfo
- modify()
: pwiz::util::mru_list< Item, KeyExtractor >
- mods
: TestModifiedPeptide
- modsHaveFormulas
: TestModifiedPeptide
- molecularWeight()
: pwiz::chemistry::Formula
, pwiz::proteome::Peptide
- monoisotope
: pwiz::chemistry::Element::Info::Record
- monoisotopicDeltaMass()
: pwiz::proteome::Modification
, pwiz::proteome::ModificationList
, pwiz::proteome::ModificationMap
- monoisotopicFrequency
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- monoisotopicIntensity
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- monoisotopicMass()
: pwiz::chemistry::Formula
, pwiz::proteome::Peptide
- monoisotopicMassDelta
: pwiz::identdata::Modification
, pwiz::identdata::SubstitutionModification
, pwiz::tradata::Modification
- monoisotopicPeakThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- monoMass
: TestAminoAcid
, TestFormula
, TestModifiedPeptide
- monoMassNeutral
: TestPeptide
- monoMassPlus1
: TestPeptide
- monoMassPlus2
: TestPeptide
- motif
: TestModification
- mp
: TestModifiedPeptide
- mr_zorg
: Fifth
- mru()
: pwiz::util::mru_list< Item, KeyExtractor >
- mru_list()
: pwiz::util::mru_list< Item, KeyExtractor >
- MS1retentionTimes
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- MS1rTime
: TestChargeStateCalculator
- ms2cnt
: pwiz::analysis::SpectrumList_ScanSummer
- MS2Deisotoper()
: pwiz::analysis::MS2Deisotoper
- MS2NoiseFilter()
: pwiz::analysis::MS2NoiseFilter
- ms2RetentionTimes
: pwiz::analysis::SpectrumList_ScanSummer
- MS2rTime
: TestChargeStateCalculator
- msd
: pwiz::analysis::MSDataAnalyzer::DataInfo
- msd_
: pwiz::analysis::SpectrumList_TitleMaker
- MSData
: pwiz::analysis::FeatureDetector
, pwiz::analysis::FeatureDetectorPeakel
, pwiz::msdata::MSData
- MSDataAnalyzerDriver()
: pwiz::analysis::MSDataAnalyzerDriver
- MSDataCache()
: pwiz::analysis::MSDataCache
- MSDataFile()
: pwiz::msdata::MSDataFile
- MSDataMerger()
: pwiz::msdata::MSDataMerger
- msDetector
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- MSIHandler()
: pwiz::util::MSIHandler
- msIonization
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- msLevel
: pwiz::identdata::MassTable
, pwiz::msdata::SpectrumInfo
- msLevels
: pwiz::analysis::RunSummary::Config
- msLevelSet_
: pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet
- MSLevelsNone
: pwiz::msdata::SpectrumListBase
- msLevelsToFilter_
: pwiz::analysis::SpectrumList_ZeroSamplesFilter
- msLevelsToPeakPick_
: pwiz::analysis::SpectrumList_PeakPicker
- msLevelsToSmooth_
: pwiz::analysis::SpectrumList_Smoother
- msLevelsToThreshold
: pwiz::analysis::ThresholdFilter
- msManufacturer
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- msMassAnalyzer
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- msModel
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- MSMSPipelineAnalysis()
: pwiz::data::pepxml::MSMSPipelineAnalysis
- msmsRunSummary
: pwiz::data::pepxml::MSMSPipelineAnalysis
- MSMSRunSummary()
: pwiz::data::pepxml::MSMSRunSummary
- MSnHeader()
: pwiz::msdata::MSnHeader
- mu_
: ralab::base::filter::utilities::Gauss< TReal >
, ralab::base::filter::utilities::Gauss_1deriv< TReal >
, ralab::base::filter::utilities::Mexican_Hat2< TReal >
, ralab::base::filter::utilities::Mexican_Hat< TReal >
- MyWrapper()
: MyWrapper
- mz
: Goober
, pairData
, parentIon
, pwiz::analysis::PepxmlRecordReader::record
, pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
- MZ
: pwiz::chemistry::MZTolerance
- mz()
: pwiz::data::CalibrationParameters
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peak
, pwiz::data::peakdata::Peakel
- Mz
: pwiz::identdata::Serializer_Text
- mz
: pwiz::msdata::MZIntensityPair
, pwiz::msdata::SpectrumInfo::PrecursorInfo
, pwiz::peptideid::PeptideID::Location
, pwiz::peptideid::PeptideID::Record
, pwiz::util::MSIHandler::Record
, RawMassDatum
, Simple
, TestDatum
- mzCenter
: pwiz::analysis::RegionSIC::Config
- mzFromFilterString()
: pwiz::msdata::SpectrumInfo
- mzHigh
: pwiz::msdata::SpectrumInfo
- mzHigh_
: pwiz::analysis::SpectrumList_MZWindow
- mzInitialEstimate
: TestInfo
- MZIntensityPair
: pwiz::analysis::PeakFamilyDetector
, pwiz::analysis::PrecursorRecalculator
, pwiz::msdata::MZIntensityPair
- mzLeftWidth
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- mzLow
: pwiz::msdata::SpectrumInfo
- mzLow_
: pwiz::analysis::SpectrumList_MZWindow
- mzMonoisotopic
: pwiz::data::peakdata::PeakFamily
- mzNegativeScans_
: pwiz::analysis::SpectrumList_LockmassRefiner
- mzPositiveScans_
: pwiz::analysis::SpectrumList_LockmassRefiner
- mzPvalue
: scoreChain
- mzRange
: pwiz::analysis::RegionAnalyzer::Config
, pwiz::analysis::RegionTIC::Config
- mzRank
: scoreChain
- mzRightWidth
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- mzrtEqual()
: mzrtEqual
- mzSet_
: pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- mzt_
: pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- mzTol
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- mzTol_
: pwiz::analysis::CwtPeakDetector
- mzTolerance
: pwiz::analysis::PeakelGrower_Proximity::Config
, pwiz::analysis::PeakelPicker_Basic::Config
- MZTolerance()
: pwiz::chemistry::MZTolerance
- mzTrue
: TestInfo
- mzType
: pwiz::identdata::DelimReader
- mzVariance
: pwiz::data::peakdata::Peakel