ProteoWizard
Public Member Functions | Public Attributes | List of all members
pwiz::data::pepxml::Specificity Struct Reference

#include <MinimumPepXML.hpp>

Public Member Functions

 Specificity ()
 
void write (XMLWriter &writer) const
 
void read (std::istream &is)
 
bool operator== (const Specificity &that) const
 
bool operator!= (const Specificity &that) const
 

Public Attributes

std::string cut
 One or more 1-letter residue codes. More...
 
std::string noCut
 Zero or more 1-letter residue codes. More...
 
std::string sense
 Defines whether cleavage occurs on the C-terminal or N-terminal side of the residue(s) listed in cut (values "C" or "N") More...
 
size_t minSpace
 minimum separation between adjacent cleavages. default 1. More...
 

Detailed Description

Definition at line 44 of file MinimumPepXML.hpp.

Constructor & Destructor Documentation

§ Specificity()

pwiz::data::pepxml::Specificity::Specificity ( )
inline

Definition at line 46 of file MinimumPepXML.hpp.

46 : minSpace(1) {}
size_t minSpace
minimum separation between adjacent cleavages. default 1.

Member Function Documentation

§ write()

void pwiz::data::pepxml::Specificity::write ( XMLWriter writer) const

Referenced by testSpecificity().

§ read()

void pwiz::data::pepxml::Specificity::read ( std::istream &  is)

Referenced by testSpecificity().

§ operator==()

bool pwiz::data::pepxml::Specificity::operator== ( const Specificity that) const

§ operator!=()

bool pwiz::data::pepxml::Specificity::operator!= ( const Specificity that) const

Member Data Documentation

§ cut

std::string pwiz::data::pepxml::Specificity::cut

One or more 1-letter residue codes.

Enzyme cleaves on the sense side of the residue(s) listed in cut unless one of the residues listed in no_cut is adjacent to the potential cleavage site.

Definition at line 52 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

§ noCut

std::string pwiz::data::pepxml::Specificity::noCut

Zero or more 1-letter residue codes.

Enzyme cleaves on the sense side of the residue(s) listed in cut unless one of the residues listed in no_cut is adjacent to the potential cleavage site.

Definition at line 58 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

§ sense

std::string pwiz::data::pepxml::Specificity::sense

Defines whether cleavage occurs on the C-terminal or N-terminal side of the residue(s) listed in cut (values "C" or "N")

Definition at line 63 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().

§ minSpace

size_t pwiz::data::pepxml::Specificity::minSpace

minimum separation between adjacent cleavages. default 1.

Definition at line 66 of file MinimumPepXML.hpp.

Referenced by makeSpecificity().


The documentation for this struct was generated from the following file: