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pwiz::identdata::Enzyme Struct Reference

Implementation of EnzymeType from the mzIdentML schema. More...

#include <IdentData.hpp>

Inheritance diagram for pwiz::identdata::Enzyme:
pwiz::identdata::Identifiable

Public Member Functions

 Enzyme (const std::string &id="", const std::string &name="")
 
bool empty () const
 
- Public Member Functions inherited from pwiz::identdata::Identifiable
 Identifiable (const std::string &id_="", const std::string &name_="")
 
virtual ~Identifiable ()
 

Public Attributes

std::string nTermGain
 
std::string cTermGain
 
proteome::Digestion::Specificity terminalSpecificity
 
int missedCleavages
 
int minDistance
 
std::string siteRegexp
 
ParamContainer enzymeName
 
- Public Attributes inherited from pwiz::identdata::Identifiable
std::string id
 
std::string name
 

Detailed Description

Implementation of EnzymeType from the mzIdentML schema.

The details of an individual cleavage enzyme should be provided by giving a regular expression or a CV term if a "standard" enzyme cleavage has been performed.

Definition at line 408 of file IdentData.hpp.

Constructor & Destructor Documentation

§ Enzyme()

pwiz::identdata::Enzyme::Enzyme ( const std::string &  id = "",
const std::string &  name = "" 
)

Member Function Documentation

§ empty()

bool pwiz::identdata::Enzyme::empty ( ) const
virtual

Reimplemented from pwiz::identdata::Identifiable.

Member Data Documentation

§ nTermGain

std::string pwiz::identdata::Enzyme::nTermGain

Definition at line 413 of file IdentData.hpp.

Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().

§ cTermGain

std::string pwiz::identdata::Enzyme::cTermGain

Definition at line 414 of file IdentData.hpp.

Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().

§ terminalSpecificity

proteome::Digestion::Specificity pwiz::identdata::Enzyme::terminalSpecificity

Definition at line 415 of file IdentData.hpp.

Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().

§ missedCleavages

int pwiz::identdata::Enzyme::missedCleavages

Definition at line 416 of file IdentData.hpp.

Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().

§ minDistance

int pwiz::identdata::Enzyme::minDistance

Definition at line 417 of file IdentData.hpp.

Referenced by pwiz::identdata::TextWriter::operator()(), and testEnzyme().

§ siteRegexp

std::string pwiz::identdata::Enzyme::siteRegexp

§ enzymeName

ParamContainer pwiz::identdata::Enzyme::enzymeName

The documentation for this struct was generated from the following file: