ProteoWizard
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#include "MSDataFile.hpp"
#include "Diff.hpp"
#include "IO.hpp"
#include "SpectrumListBase.hpp"
#include "ChromatogramListBase.hpp"
#include "examples.hpp"
#include "pwiz/utility/misc/unit.hpp"
#include "pwiz/utility/misc/Filesystem.hpp"
#include "pwiz/utility/misc/Std.hpp"
#include <boost/iostreams/filtering_stream.hpp>
#include <boost/iostreams/filter/gzip.hpp>
#include <boost/iostreams/device/file_descriptor.hpp>
#include <boost/iostreams/copy.hpp>
Go to the source code of this file.
Classes | |
class | TestReader |
Functions | |
void | hackInMemoryMSData (MSData &msd) |
void | validateMmgfMzxmlRoundTrip () |
void | validateWriteRead (const MSDataFile::WriteConfig &writeConfig, const DiffConfig diffConfig) |
void | test () |
void | demo () |
void | testReader () |
void | testSHA1 () |
int | main (int argc, char *argv[]) |
Variables | |
ostream * | os_ = 0 |
string | filenameBase_ = "temp.MSDataFileTest" |
const char | rawHeader_ [] |
void hackInMemoryMSData | ( | MSData & | msd | ) |
Definition at line 51 of file MSDataFileTest.cpp.
References pwiz::msdata::Run::chromatogramListPtr, pwiz::msdata::MSData::fileDescription, pwiz::msdata::MSData::run, pwiz::msdata::ChromatogramListBase::setDataProcessingPtr(), pwiz::msdata::SpectrumListBase::setDataProcessingPtr(), pwiz::msdata::MSData::softwarePtrs, pwiz::msdata::FileDescription::sourceFilePtrs, and pwiz::msdata::Run::spectrumListPtr.
Referenced by validateWriteRead().
void validateMmgfMzxmlRoundTrip | ( | ) |
Definition at line 66 of file MSDataFileTest.cpp.
References filename1, filenameBase_, pwiz::msdata::MSDataFile::WriteConfig::format, Format_MGF, Format_mzXML, pwiz::msdata::MSData::run, pwiz::msdata::SpectrumList::spectrum(), pwiz::msdata::Run::spectrumListPtr, unit_assert, and pwiz::identdata::IO::write().
Referenced by test().
void validateWriteRead | ( | const MSDataFile::WriteConfig & | writeConfig, |
const DiffConfig | diffConfig | ||
) |
Definition at line 101 of file MSDataFileTest.cpp.
References diff(), filename1, filenameBase_, pwiz::msdata::MSDataFile::WriteConfig::format, Format_mzXML, hackInMemoryMSData(), pwiz::identdata::examples::initializeTiny(), os_, pwiz::msdata::MSData::run, pwiz::msdata::Run::spectrumListPtr, unit_assert, pwiz::identdata::IO::write(), and pwiz::msdata::MSDataFile::write().
Referenced by test().
void test | ( | ) |
Definition at line 225 of file MSDataFileTest.cpp.
References pwiz::msdata::MSDataFile::WriteConfig::binaryDataEncoderConfig, pwiz::msdata::MSDataFile::WriteConfig::format, Format_mzXML, pwiz::msdata::DiffConfig::ignoreChromatograms, pwiz::msdata::DiffConfig::ignoreMetadata, pwiz::msdata::MSDataFile::WriteConfig::indexed, pwiz::msdata::BinaryDataEncoder::Config::precision, validateMmgfMzxmlRoundTrip(), and validateWriteRead().
Referenced by main().
void demo | ( | ) |
Definition at line 259 of file MSDataFileTest.cpp.
References pwiz::msdata::MSDataFile::WriteConfig::binaryDataEncoderConfig, filenameBase_, pwiz::msdata::MSDataFile::WriteConfig::format, Format_mzXML, Format_Text, pwiz::identdata::examples::initializeTiny(), pwiz::msdata::BinaryDataEncoder::Config::precision, and pwiz::identdata::IO::write().
void testReader | ( | ) |
Definition at line 326 of file MSDataFileTest.cpp.
References TestReader::count, filenameBase_, os_, rawHeader_, and unit_assert.
void testSHA1 | ( | ) |
Definition at line 348 of file MSDataFileTest.cpp.
References pwiz::msdata::MSData::fileDescription, filenameBase_, pwiz::identdata::examples::initializeTiny(), MS_SHA_1, os_, pwiz::msdata::FileDescription::sourceFilePtrs, unit_assert, and pwiz::identdata::IO::write().
Referenced by main().
int main | ( | int | argc, |
char * | argv[] | ||
) |
Definition at line 395 of file MSDataFileTest.cpp.
References os_, test(), TEST_EPILOG, TEST_FAILED, TEST_PROLOG, pwiz::util::testReader(), and testSHA1().
ostream* os_ = 0 |
Definition at line 45 of file MSDataFileTest.cpp.
Referenced by main(), testReader(), testSHA1(), and validateWriteRead().
string filenameBase_ = "temp.MSDataFileTest" |
Definition at line 48 of file MSDataFileTest.cpp.
Referenced by demo(), testReader(), testSHA1(), validateMmgfMzxmlRoundTrip(), and validateWriteRead().
const char rawHeader_[] |
Definition at line 281 of file MSDataFileTest.cpp.
Referenced by TestReader::identify(), and testReader().