- i -
- id
: pwiz::cv::CV
, pwiz::cv::CVTermInfo
, pwiz::data::Index::Entry
, pwiz::data::ParamGroup
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peak
, pwiz::data::pepxml::AnalysisTimestamp
, pwiz::data::Term
, pwiz::identdata::id_p< T >
, pwiz::identdata::Identifiable
, pwiz::identdata::IdentifiableParamContainer
, pwiz::identdata::MassTable
, pwiz::identdata::software_p
, pwiz::msdata::ChromatogramIdentity
, pwiz::msdata::DataProcessing
, pwiz::msdata::InstrumentConfiguration
, pwiz::msdata::MSData
, pwiz::msdata::Run
, pwiz::msdata::Sample
, pwiz::msdata::ScanSettings
, pwiz::msdata::Software
, pwiz::msdata::SourceFile
, pwiz::msdata::SpectrumIdentity
, pwiz::msdata::SpectrumInfo
, pwiz::proteome::IPIFASTADatabase::Record
, pwiz::proteome::Protein
, pwiz::proteome::ProteomeData
, pwiz::tradata::Compound
, pwiz::tradata::Contact
, pwiz::tradata::Instrument
, pwiz::tradata::Peptide
, pwiz::tradata::Protein
, pwiz::tradata::Publication
, pwiz::tradata::Software
, pwiz::tradata::Target
, pwiz::tradata::TraData
, pwiz::tradata::Transition
- id_
: pwiz::data::diff_impl::HasID< object_type >
- id_score
: pwiz::analysis::PepxmlRecordReader::record
- idSet_
: pwiz::analysis::ProteinList_FilterPredicate_IdSet
- idx_
: ralab::base::resample::Convert2Dense
- ignoreChromatograms
: pwiz::msdata::DiffConfig
- ignoreDataProcessing
: pwiz::msdata::DiffConfig
- ignoreIdentity
: pwiz::msdata::DiffConfig
- ignoreMetadata
: pwiz::msdata::DiffConfig
, pwiz::proteome::DiffConfig
- ignoreProteinDetectionList
: pwiz::identdata::Reader::Config
- ignoreSequenceCollectionAndAnalysisData
: pwiz::identdata::Reader::Config
- ignoreSpectra
: pwiz::msdata::DiffConfig
- ignoreVersions
: pwiz::data::BaseDiffConfig
- il
: pwiz::util::mru_list< Item, KeyExtractor >
- imaginary
: TestDatum
- impl_
: pwiz::analysis::MSDataCache
, pwiz::analysis::PeakFamilyDetectorFT
, pwiz::analysis::PrecursorMassFilter
, pwiz::analysis::PrecursorRecalculatorDefault
, pwiz::analysis::ProteinList_DecoyGenerator
, pwiz::analysis::ProteinList_DecoyGeneratorPredicate_Shuffled
, pwiz::analysis::ProteinList_Filter
, pwiz::analysis::RegionAnalyzer
, pwiz::analysis::SavitzkyGolaySmoother
, pwiz::analysis::SpectrumList_Filter
, pwiz::analysis::SpectrumList_MZRefiner
, pwiz::analysis::SpectrumList_PrecursorRecalculator
, pwiz::analysis::SpectrumList_PrecursorRefine
, pwiz::analysis::SpectrumList_Sorter
, pwiz::chemistry::Formula
, pwiz::chemistry::IsotopeCalculator
, pwiz::chemistry::IsotopeEnvelopeEstimator
, pwiz::chemistry::IsotopeTable
, pwiz::data::BinaryIndexStream
, pwiz::data::CVTranslator
, pwiz::data::FrequencyData
, pwiz::data::MemoryIndex
, pwiz::frequency::TruncatedLorentzian
, pwiz::identdata::Serializer_Text
, pwiz::math::Stats
, pwiz::minimxml::XMLWriter
, pwiz::msdata::BinaryDataEncoder
, pwiz::msdata::Index_mzML
, pwiz::msdata::LegacyAdapter_Instrument
, pwiz::msdata::LegacyAdapter_Software
, pwiz::msdata::Serializer_MGF
, pwiz::msdata::Serializer_MSn
, pwiz::msdata::Serializer_mzML
, pwiz::msdata::Serializer_mzXML
, pwiz::msdata::SpectrumIterator
, pwiz::msdata::SpectrumWorkerThreads
, pwiz::proteome::Digestion::const_iterator
, pwiz::proteome::Digestion
, pwiz::proteome::Fragmentation
, pwiz::proteome::IPIFASTADatabase
, pwiz::proteome::Modification
, pwiz::proteome::ModificationMap
, pwiz::proteome::Peptide
, pwiz::util::IterationListenerRegistry
, pwiz::util::SHA1Calculator
- include
: pwiz::identdata::Filter
- indent_
: pwiz::identdata::TextWriter
, pwiz::msdata::TextWriter
, pwiz::proteome::TextWriter
, pwiz::tradata::TextWriter
- indentationStep
: pwiz::minimxml::XMLWriter::Config
- independent
: pwiz::data::pepxml::SampleEnzyme
, pwiz::identdata::Enzymes
- index
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::Index::Entry
, pwiz::data::peakdata::Scan
, pwiz::data::pepxml::SpectrumQuery
, pwiz::identdata::IonType
, pwiz::minimxml::SAXParser::Handler::Attributes
, pwiz::msdata::ChromatogramIdentity
, pwiz::msdata::SpectrumIdentity
, pwiz::msdata::SpectrumInfo
, pwiz::msdata::SpectrumInfo::PrecursorInfo
, pwiz::msdata::SpectrumListCache::CacheEntry
, pwiz::proteome::Protein
, SimpleAnalyzer
, TestSpectrumInfo
- index_end
: pwiz::minimxml::SAXParser::Handler::Attributes
- indexApex
: pwiz::analysis::RegionAnalyzer::Stats
- indexed
: pwiz::msdata::MSDataFile::WriteConfig
, pwiz::msdata::Serializer_mzML::Config
, pwiz::msdata::Serializer_mzXML::Config
, pwiz::proteome::ProteomeDataFile::WriteConfig
, pwiz::proteome::Reader_FASTA::Config
- indexList
: isoChain
, isotopeChain
, precursorGroup
- indexMap
: pwiz::analysis::SpectrumList_ScanSummer
, rtimeMap
- indexPtr
: pwiz::proteome::Serializer_FASTA::Config
- indexRange
: pwiz::analysis::RegionAnalyzer::Config
- indexSet_
: pwiz::analysis::ProteinList_FilterPredicate_IndexSet
, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
- indicator_
: ralab::base::resample::Bucket1D
- indicatorptr_
: ralab::base::resample::Bucket1D
- indices_
: TestIterationListener
, TestIterationListener_WithCancel
- initialStyle
: pwiz::minimxml::XMLWriter::Config
- inner_
: pwiz::msdata::SpectrumListWrapper
, pwiz::proteome::ProteinListWrapper
- inputActivationTypeArray
: TestChargeStateCalculator
- inputChargeStateArray
: TestChargeStateCalculator
- inputFile
: pwiz::data::pepxml::PeptideProphetSummary
- inputIntensityArray
: TestChargeStateCalculator
, TestDeisotopeCalculator
, TestDeisotoper
, TestETDMassFilter
, TestMetadataFixer
, TestMS2Denoise
, TestScanSummerCalculator
, TestThresholder
- inputMSDataPtrs_
: pwiz::msdata::MSDataMerger
- inputMZArray
: TestChargeStateCalculator
, TestDeisotopeCalculator
, TestDeisotoper
, TestETDMassFilter
, TestMetadataFixer
, TestMS2Denoise
, TestScanSummerCalculator
, TestThresholder
- inputPrecursorMZ
: TestChargeStateCalculator
, TestScanSummerCalculator
- inputs
: pwiz::identdata::DataCollection
- inputSpectra
: pwiz::identdata::SpectrumIdentification
- inputSpectrumIdentifications
: pwiz::identdata::ProteinDetection
- instrumentConfigurationPtr
: pwiz::msdata::Scan
- instrumentConfigurationPtrs
: pwiz::msdata::MSData
- instrumentModel
: pwiz::data::CalibrationParameters
- instrumentPtr
: pwiz::tradata::Configuration
- instrumentPtrs
: pwiz::tradata::TraData
- integrationWidth_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- integrator_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- integwith_
: ralab::base::ms::LocalMinPeakArea< TReal >
, ralab::base::ms::SimplePeakArea< TReal >
- intensity
: Datum
, pairData
, parentIon
, pwiz::analysis::PrecursorRecalculator::PrecursorInfo
, pwiz::analysis::SpectrumList_PrecursorRefine::PrecursorInfo
, pwiz::data::peakdata::Peak
, pwiz::msdata::MZIntensityPair
, pwiz::msdata::SpectrumInfo::PrecursorInfo
, pwiz::msdata::TimeIntensityPair
, pwiz::util::MSIHandler::Record
, RawMassDatum
, TestSpectrumInfo
- intensityPvalue
: scoreChain
- intensityRank
: scoreChain
- intensitySumPvalue
: scoreChain
- intensitySumRank
: scoreChain
- intensitythreshold_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- interpretAsScanNumbers
: pwiz::analysis::SpectrumBinaryData::Config
- interpretationList
: pwiz::tradata::Transition
- intervals_
: pwiz::util::IntegerSet
- inverse_
: pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
- invR_
: ralab::base::resample::FTMSCompFunctor< TReal >
- ionInjectionTime
: pwiz::msdata::SpectrumInfo
- ionscore
: pwiz::analysis::PepxmlRecordReader::record
- isDecoy
: pwiz::identdata::PeptideEvidence
- isDynamic
: TestModification
- isObsolete
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- isolationWindow
: pwiz::msdata::Precursor
, pwiz::msdata::Product
- isotopeCalculator
: pwiz::chemistry::IsotopeEnvelopeEstimator::Config
- isotopeEnvelopeEstimator
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopeMaxChargeState
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopeMaxNeutronCount
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- isotopes
: pwiz::chemistry::detail::Element
, pwiz::chemistry::Element::Info::Record
- isotopesSize
: pwiz::chemistry::detail::Element
- isotopeThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- isRejected
: pwiz::data::pepxml::SearchHit
- issue
: pwiz::identdata::BibliographicReference
- isZoomScan
: pwiz::msdata::SpectrumInfo
- it_
: pwiz::util::IntegerSet::Iterator
- iterationCount
: pwiz::frequency::FrequencyEstimatorPhysicalModel::Config
, pwiz::util::IterationListener::UpdateMessage
- iterationIndex
: pwiz::util::IterationListener::UpdateMessage
- iterationListenerRegistry
: pwiz::identdata::Reader::Config