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pwiz::msdata::SpectrumList_mzML Class Reference

implementation of SpectrumList, backed by an mzML file More...

#include <SpectrumList_mzML.hpp>

Inheritance diagram for pwiz::msdata::SpectrumList_mzML:
pwiz::msdata::SpectrumListBase pwiz::msdata::SpectrumList

Static Public Member Functions

static SpectrumListPtr create (boost::shared_ptr< std::istream > is, const MSData &msd, const Index_mzML_Ptr &indexPtr)
 

Additional Inherited Members

- Public Member Functions inherited from pwiz::msdata::SpectrumListBase
 SpectrumListBase ()
 
virtual const boost::shared_ptr< const DataProcessingdataProcessingPtr () const
 implementation of SpectrumList More...
 
virtual void setDataProcessingPtr (DataProcessingPtr dp)
 set DataProcessing More...
 
virtual void warn_once (const char *msg) const
 issues a warning once per SpectrumList instance (based on string hash) More...
 
- Public Member Functions inherited from pwiz::msdata::SpectrumList
virtual size_t size () const =0
 returns the number of spectra More...
 
virtual bool empty () const
 returns true iff (size() == 0) and (dataProcessingPtr.get() == NULL) More...
 
virtual const SpectrumIdentityspectrumIdentity (size_t index) const =0
 access to a spectrum index More...
 
virtual size_t find (const std::string &id) const
 find id in the spectrum index (returns size() on failure) More...
 
virtual size_t findAbbreviated (const std::string &abbreviatedId, char delimiter='.') const
 find an abbreviated id (e.g. "1.1.123.2" for "sample=1 period=1 cycle=123 experiment=2") in the spectrum index (returns size() on failure) More...
 
virtual IndexList findNameValue (const std::string &name, const std::string &value) const
 find all spectrum indexes with specified name/value pair More...
 
virtual IndexList findSpotID (const std::string &spotID) const
 find all spectrum indexes with spotID (returns empty vector on failure) More...
 
virtual SpectrumPtr spectrum (size_t index, bool getBinaryData=false) const =0
 retrieve a spectrum by index More...
 
virtual SpectrumPtr spectrum (const SpectrumPtr &seed, bool getBinaryData) const
 get a copy of the seed spectrum, optionally with its binary data populated this is useful for formats like mzML that can delay loading of binary data More...
 
virtual SpectrumPtr spectrum (size_t index, DetailLevel detailLevel) const
 retrieve a spectrum by index More...
 
virtual ~SpectrumList ()
 
- Protected Attributes inherited from pwiz::msdata::SpectrumListBase
DataProcessingPtr dp_
 
const pwiz::util::IntegerSet MSLevelsNone
 

Detailed Description

implementation of SpectrumList, backed by an mzML file

Definition at line 39 of file SpectrumList_mzML.hpp.

Member Function Documentation

§ create()

static SpectrumListPtr pwiz::msdata::SpectrumList_mzML::create ( boost::shared_ptr< std::istream >  is,
const MSData msd,
const Index_mzML_Ptr indexPtr 
)
static

The documentation for this class was generated from the following file: