ProteoWizard
File List
Here is a list of all files with brief descriptions:
[detail level
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]
▼
pwiz
▼
analysis
►
common
CwtPeakDetector.hpp
CwtPeakDetectorTest.cpp
DataFilter.hpp
ExtraZeroSamplesFilter.hpp
ExtraZeroSamplesFilterTest.cpp
LocalMaximumPeakDetector.hpp
LocalMaximumPeakDetectorTest.cpp
PeakDetector.hpp
SavitzkyGolaySmoother.hpp
SavitzkyGolaySmootherTest.cpp
Smoother.hpp
WhittakerSmoother.hpp
WhittakerSmootherTest.cpp
ZeroSampleFiller.hpp
ZeroSampleFillerTest.cpp
►
frequency
DerivativeTest.hpp
FrequencyEstimator.hpp
FrequencyEstimatorPhysicalModel.hpp
FrequencyEstimatorPhysicalModelTest.cpp
FrequencyEstimatorSimple.hpp
FrequencyEstimatorSimpleTest.cpp
MagnitudeLorentzian.hpp
MagnitudeLorentzianTest.cpp
MagnitudeLorentzianTestData.hpp
ParameterEstimator.hpp
ParametrizedFunction.hpp
ParametrizedFunctionTest.cpp
PeakDetector.hpp
PeakDetectorMatchedFilter.hpp
PeakDetectorMatchedFilterTest.cpp
PeakDetectorMatchedFilterTestData.hpp
PeakDetectorNaive.hpp
PeakDetectorNaiveTest.cpp
TruncatedLorentzian.hpp
TruncatedLorentzianEstimator.hpp
TruncatedLorentzianParameters.hpp
TruncatedLorentzianParametersTest.cpp
TruncatedLorentzianTest.cpp
►
passive
MetadataReporter.hpp
MSDataAnalyzer.hpp
MSDataAnalyzerTest.cpp
MSDataCache.hpp
MSDataCacheTest.cpp
PepXMLCat.hpp
RegionAnalyzer.hpp
RegionSIC.hpp
RegionSlice.hpp
RegionTIC.hpp
RunSummary.hpp
SpectrumBinaryData.hpp
SpectrumTable.hpp
TabularConfig.hpp
►
peakdetect
FeatureDetector.hpp
FeatureDetectorPeakel.hpp
FeatureDetectorPeakelTest.cpp
FeatureDetectorSimple.hpp
FeatureDetectorSimpleTest.cpp
FeatureDetectorTuningTest.cpp
FeatureModeler.hpp
FeatureModelerTest.cpp
MZRTField.hpp
MZRTFieldTest.cpp
Noise.hpp
NoiseTest.cpp
PeakelGrower.hpp
PeakelGrowerTest.cpp
PeakelPicker.hpp
PeakelPickerTest.cpp
PeakExtractor.hpp
PeakExtractorTest.cpp
PeakFamilyDetector.hpp
PeakFamilyDetectorFT.hpp
PeakFamilyDetectorFTTest.cpp
PeakFinder.hpp
PeakFinderTest.cpp
PeakFitter.hpp
PeakFitterTest.cpp
►
peptideid
PeptideID.hpp
PeptideID_flat.hpp
PeptideID_flatTest.cpp
PeptideID_pepXML.hpp
PeptideID_pepXMLTest.cpp
PeptideIDMap.hpp
PeptideIDMapTest.cpp
►
proteome_processing
ProteinList_DecoyGenerator.hpp
ProteinList_DecoyGeneratorTest.cpp
ProteinList_Filter.hpp
ProteinList_FilterTest.cpp
ProteinListFactory.hpp
ProteinListFactoryTest.cpp
►
spectrum_processing
MS2Deisotoper.hpp
MS2DeisotoperTest.cpp
MS2NoiseFilter.hpp
PrecursorMassFilter.hpp
PrecursorRecalculator.hpp
PrecursorRecalculatorDefault.hpp
PrecursorRecalculatorDefaultTest.cpp
SpectrumList_3D.hpp
SpectrumList_3D_Test.cpp
SpectrumList_ChargeFromIsotope.hpp
SpectrumList_ChargeFromIsotopeTest.cpp
SpectrumList_ChargeStateCalculator.hpp
SpectrumList_ChargeStateCalculatorTest.cpp
SpectrumList_Filter.hpp
SpectrumList_FilterTest.cpp
SpectrumList_IonMobility.hpp
SpectrumList_IonMobility_Test.cpp
SpectrumList_LockmassRefiner.hpp
SpectrumList_LockmassRefinerTest.cpp
SpectrumList_MetadataFixer.hpp
SpectrumList_MetadataFixerTest.cpp
SpectrumList_MZRefiner.hpp
SpectrumList_MZRefinerTest.cpp
SpectrumList_MZWindow.hpp
SpectrumList_MZWindowTest.cpp
SpectrumList_PeakFilter.hpp
SpectrumList_PeakFilterTest.cpp
SpectrumList_PeakPicker.hpp
SpectrumList_PrecursorRecalculator.hpp
SpectrumList_PrecursorRecalculatorTest.cpp
SpectrumList_PrecursorRefine.hpp
SpectrumList_PrecursorRefineTest.cpp
SpectrumList_ScanSummer.hpp
SpectrumList_ScanSummerTest.cpp
SpectrumList_Smoother.hpp
SpectrumList_Sorter.hpp
SpectrumList_SorterTest.cpp
SpectrumList_TitleMaker.hpp
SpectrumList_ZeroSamplesFilter.hpp
SpectrumListFactory.hpp
SpectrumListFactoryTest.cpp
ThresholdFilter.hpp
Version.hpp
▼
data
►
common
BinaryIndexStream.hpp
BinaryIndexStreamTest.cpp
cv.hpp
cvtest.cpp
CVTranslator.hpp
CVTranslatorTest.cpp
diff_std.hpp
diff_std_test.cpp
Index.hpp
MemoryIndex.hpp
MemoryIndexTest.cpp
obo.hpp
obotest.cpp
ParamTypes.hpp
ParamTypesTest.cpp
Unimod.hpp
UnimodTest.cpp
►
identdata
DefaultReaderList.hpp
DelimReader.hpp
DelimWriter.hpp
Diff.hpp
DiffTest.cpp
examples.hpp
ExtendedReadTest.cpp
IdentData.hpp
IdentDataFile.hpp
IdentDataTest.cpp
IO.hpp
IOTest.cpp
KwCVMap.hpp
KwCVMapTest.cpp
MascotReader.hpp
MzidPredicates.hpp
Pep2MzIdent.hpp
Pep2MzIdentTest.cpp
Reader.hpp
ReaderTest.cpp
References.hpp
ReferencesTest.cpp
Serializer_mzid.hpp
Serializer_mzid_Test.cpp
Serializer_pepXML.hpp
Serializer_pepXML_Test.cpp
Serializer_protXML.hpp
Serializer_protXML_Test.cpp
Serializer_Text.hpp
Serializer_Text_Test.cpp
TextWriter.hpp
Version.hpp
►
misc
CalibrationParameters.hpp
CalibrationParametersTest.cpp
FrequencyData.hpp
FrequencyDataTest.cpp
FrequencyDataTestData.hpp
MinimumPepXML.hpp
MinimumPepXMLTest.cpp
PeakData.hpp
PeakDataTest.cpp
SampleDatum.hpp
SampleDatumTest.cpp
►
msdata
BinaryDataEncoder.hpp
BinaryDataEncoderTest.cpp
ChromatogramList_mzML.hpp
ChromatogramList_mzML_Test.cpp
ChromatogramListBase.hpp
ChromatogramListBaseTest.cpp
DefaultReaderList.hpp
Diff.hpp
DiffTest.cpp
examples.hpp
Index_mzML.hpp
IO.hpp
IOTest.cpp
LegacyAdapter.hpp
LegacyAdapterTest.cpp
MemoryMRUCache.hpp
MSData.hpp
MSDataFile.hpp
MSDataFileTest.cpp
MSDataMerger.hpp
MSDataMergerTest.cpp
MSDataTest.cpp
MSnReaderTest.cpp
MSNumpress.hpp
Reader.hpp
ReaderTest.cpp
References.hpp
ReferencesTest.cpp
Serializer_MGF.hpp
Serializer_MGF_Test.cpp
Serializer_MSn.hpp
Serializer_MSn_Test.cpp
Serializer_mzML.hpp
Serializer_mzML_Test.cpp
Serializer_mzXML.hpp
Serializer_mzXML_Test.cpp
SHA1OutputObserver.hpp
SpectrumInfo.hpp
SpectrumInfoTest.cpp
SpectrumIterator.hpp
SpectrumIteratorTest.cpp
SpectrumList_BTDX.hpp
SpectrumList_MGF.hpp
SpectrumList_MGF_Test.cpp
SpectrumList_MSn.hpp
SpectrumList_MSn_Test.cpp
SpectrumList_mzML.hpp
SpectrumList_mzML_Test.cpp
SpectrumList_mzXML.hpp
SpectrumList_mzXML_Test.cpp
SpectrumListBase.hpp
SpectrumListBaseTest.cpp
SpectrumListCache.hpp
SpectrumListCacheTest.cpp
SpectrumListWrapper.hpp
SpectrumListWrapperTest.cpp
SpectrumWorkerThreads.hpp
TextWriter.hpp
Version.hpp
►
proteome
AminoAcid.hpp
AminoAcidTest.cpp
DefaultReaderList.hpp
Diff.hpp
DiffTest.cpp
Digestion.hpp
DigestionTest.cpp
examples.hpp
Modification.hpp
Peptide.hpp
PeptideTest.cpp
ProteinListCache.hpp
ProteinListCacheTest.cpp
ProteinListWrapper.hpp
ProteinListWrapperTest.cpp
ProteomeData.hpp
ProteomeDataFile.hpp
ProteomeDataFileTest.cpp
ProteomeDataTest.cpp
Reader.hpp
Reader_FASTA.hpp
ReaderTest.cpp
Serializer_FASTA.hpp
Serializer_FASTA_Test.cpp
TextWriter.hpp
Version.hpp
►
tradata
DefaultReaderList.hpp
Diff.hpp
DiffTest.cpp
examples.hpp
IO.hpp
IOTest.cpp
Reader.hpp
ReaderTest.cpp
References.hpp
ReferencesTest.cpp
Serializer_traML.hpp
Serializer_traML_Test.cpp
TextWriter.hpp
TraData.hpp
TraDataFile.hpp
TraDataFileTest.cpp
TraDataTest.cpp
Version.hpp
►
vendor_readers
►
ABI
►
T2D
Reader_ABI_T2D.hpp
Reader_ABI_T2D_Test.cpp
SpectrumList_ABI_T2D.hpp
ChromatogramList_ABI.hpp
Reader_ABI.hpp
Reader_ABI_Detail.hpp
Reader_ABI_Test.cpp
SpectrumList_ABI.hpp
►
Agilent
ChromatogramList_Agilent.hpp
Reader_Agilent.hpp
Reader_Agilent_Test.cpp
SpectrumList_Agilent.hpp
►
Bruker
ChromatogramList_Bruker.hpp
Reader_Bruker.hpp
Reader_Bruker_Detail.hpp
Reader_Bruker_Test.cpp
SpectrumList_Bruker.hpp
►
Shimadzu
ChromatogramList_Shimadzu.hpp
Reader_Shimadzu.hpp
►
Thermo
ChromatogramList_Thermo.hpp
Reader_Thermo.hpp
Reader_Thermo_Detail.hpp
Reader_Thermo_Test.cpp
SpectrumList_Thermo.hpp
►
UIMF
Reader_UIMF.hpp
SpectrumList_UIMF.hpp
►
Waters
ChromatogramList_Waters.hpp
Reader_Waters.hpp
Reader_Waters_Detail.hpp
Reader_Waters_Test.cpp
SpectrumList_Waters.hpp
ExtendedReaderList.hpp
▼
utility
►
chemistry
Chemistry.hpp
ChemistryData.hpp
ChemistryTest.cpp
Ion.hpp
IsotopeCalculator.hpp
IsotopeCalculatorTest.cpp
IsotopeEnvelopeEstimator.hpp
IsotopeEnvelopeEstimatorTest.cpp
IsotopeTable.hpp
IsotopeTableTest.cpp
MZTolerance.hpp
MZToleranceTest.cpp
►
findmf
►
base
►
base
►
utilities
base.hpp
interpolation.hpp
base.hpp
basetest.cpp
constants.hpp
copy_iftest.cpp
copyif.hpp
cumsum.hpp
cumsumtest.cpp
diff.hpp
difftest.cpp
equispaceinterpolationtest.cpp
interpolate.hpp
scale.hpp
►
filter
►
utilities
gauss.hpp
mexhat.hpp
preparedata.hpp
filter.hpp
filterutilstest.cpp
gaussfilter.hpp
gaussfiltertest.cpp
►
ms
peakpickerqtof.hpp
simplepicker.hpp
simplepickertest.cpp
►
resample
►
utilities
determinebinwidth.hpp
bin1d.hpp
breakspec.hpp
bucket1d.hpp
bucket1dtest.cpp
convert2dense.hpp
convert2densetest.cpp
determinbinwithtest.cpp
determinebinwidth.hpp
masscomparefunctors.hpp
►
math
erf.hpp
erfTest.cpp
HouseholderQR.hpp
HouseholderQRTest.cpp
LinearLeastSquares.hpp
LinearLeastSquaresTest.cpp
LinearSolver.hpp
LinearSolverTest.cpp
MatchedFilter.hpp
MatchedFilterTest.cpp
MatrixInverse.hpp
OrderedPair.hpp
OrderedPairTest.cpp
Parabola.hpp
ParabolaTest.cpp
qr.hpp
qrTest.cpp
round.hpp
Stats.hpp
StatsTest.cpp
Types.hpp
►
minimxml
SAXParser.hpp
SAXParserTest.cpp
XMLWriter.hpp
XMLWriterTest.cpp
►
misc
almost_equal.hpp
almost_equal_test.cpp
Base64.hpp
Base64Test.cpp
CharIndexedVector.hpp
ClickwrapPrompter.hpp
ClickwrapPrompterTest.cpp
Container.hpp
cpp_cli_utilities.hpp
DateTime.hpp
DateTimeTest.cpp
endian.hpp
endian_test.cpp
Environment.hpp
Exception.hpp
ExceptionTest.cpp
Export.hpp
FailTest.cpp
Filesystem.hpp
FilesystemTest.cpp
Image.hpp
IntegerSet.hpp
IntegerSetTest.cpp
IterationListener.hpp
IterationListenerTest.cpp
mru_list.hpp
mru_list_test.cpp
MSIHandler.hpp
Once.hpp
optimized_lexical_cast.hpp
random_access_compressed_ifstream.hpp
SHA1.h
SHA1_ostream.hpp
SHA1_ostream_test.cpp
SHA1Calculator.hpp
SHA1CalculatorTest.cpp
shared_map.hpp
Singleton.hpp
Std.hpp
Stream.hpp
String.hpp
TabReader.hpp
TabReaderTest.cpp
Timer.hpp
unit.hpp
VendorReaderTestHarness.hpp
virtual_map.hpp
►
proteome
IPIFASTADatabase.hpp
IPIFASTADatabaseTest.cpp
Version.hpp
mainpage.hpp
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