Here is a list of all class members with links to the classes they belong to:
- r -
- radius
: pwiz::analysis::RegionSIC::Config
- RadiusUnits
: pwiz::analysis::RegionSIC::Config
- radiusUnits
: pwiz::analysis::RegionSIC::Config
- RadiusUnits_amu
: pwiz::analysis::RegionSIC::Config
- RadiusUnits_ppm
: pwiz::analysis::RegionSIC::Config
- RadiusUnits_Unknown
: pwiz::analysis::RegionSIC::Config
- random_access_compressed_ifstream()
: pwiz::util::random_access_compressed_ifstream
- rank
: pwiz::identdata::SpectrumIdentificationItem
- raw_data
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- raw_data_type
: pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
- rbegin()
: pwiz::proteome::ModificationMap
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- read()
: pwiz::data::FrequencyData
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::FeatureFile
, pwiz::data::peakdata::Peak
, pwiz::data::peakdata::PeakData
, pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::PeakFamily
, pwiz::data::peakdata::Scan
, pwiz::data::peakdata::Software::Parameter
, pwiz::data::peakdata::Software
, pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::AminoAcidModification
, pwiz::data::pepxml::AnalysisResult
, pwiz::data::pepxml::EnzymaticSearchConstraint
, pwiz::data::pepxml::Match
, pwiz::data::pepxml::MatchData
, pwiz::data::pepxml::ModAminoAcidMass
, pwiz::data::pepxml::ModificationInfo
, pwiz::data::pepxml::MSMSPipelineAnalysis
, pwiz::data::pepxml::MSMSRunSummary
, pwiz::data::pepxml::Parameter
, pwiz::data::pepxml::PeptideProphetResult
, pwiz::data::pepxml::Q3RatioResult
, pwiz::data::pepxml::SampleEnzyme
, pwiz::data::pepxml::SearchDatabase
, pwiz::data::pepxml::SearchHit
, pwiz::data::pepxml::SearchResult
, pwiz::data::pepxml::SearchScore
, pwiz::data::pepxml::SearchSummary
, pwiz::data::pepxml::Specificity
, pwiz::data::pepxml::SpectrumQuery
, pwiz::identdata::DelimReader
, pwiz::identdata::MascotReader
, pwiz::identdata::Reader
, pwiz::identdata::ReaderList
, pwiz::identdata::Serializer_mzIdentML
, pwiz::identdata::Serializer_pepXML
, pwiz::identdata::Serializer_protXML
, pwiz::identdata::Serializer_Text
, pwiz::minimxml::basic_charcounter< Ch >
, pwiz::msdata::Reader
, pwiz::msdata::Reader_ABI
, pwiz::msdata::Reader_ABI_T2D
, pwiz::msdata::Reader_Agilent
, pwiz::msdata::Reader_Bruker
, pwiz::msdata::Reader_BTDX
, pwiz::msdata::Reader_MGF
, pwiz::msdata::Reader_MSn
, pwiz::msdata::Reader_mz5
, pwiz::msdata::Reader_mzML
, pwiz::msdata::Reader_mzXML
, pwiz::msdata::Reader_Shimadzu
, pwiz::msdata::Reader_Thermo
, pwiz::msdata::Reader_UIMF
, pwiz::msdata::Reader_Waters
, pwiz::msdata::ReaderList
, pwiz::msdata::Serializer_MGF
, pwiz::msdata::Serializer_MSn
, pwiz::msdata::Serializer_mzML
, pwiz::msdata::Serializer_mzXML
, pwiz::proteome::Reader
, pwiz::proteome::Reader_FASTA
, pwiz::proteome::ReaderList
, pwiz::proteome::Serializer_FASTA
, pwiz::tradata::Reader
, pwiz::tradata::ReaderList
, pwiz::tradata::Serializer_traML
, Reader1
, Reader2
, TestReader
- readAnalysisData
: pwiz::identdata::Serializer_mzIdentML::Config
- Reader_FASTA()
: pwiz::proteome::Reader_FASTA
- readerConfig
: Reader1
- ReaderConfig()
: Reader1::ReaderConfig
- readerConfig
: Reader2
- ReaderConfig()
: Reader2::ReaderConfig
- ReaderFail()
: pwiz::identdata::ReaderFail
, pwiz::msdata::ReaderFail
, pwiz::proteome::ReaderFail
, pwiz::tradata::ReaderFail
- readIds()
: pwiz::msdata::Reader
, pwiz::msdata::Reader_ABI
, pwiz::msdata::ReaderList
- readSequenceCollection
: pwiz::identdata::Serializer_mzIdentML::Config
- readSpectrumQueries
: pwiz::identdata::Serializer_pepXML::Config
, pwiz::identdata::Serializer_protXML::Config
- real
: TestDatum
- recalculate()
: pwiz::analysis::PrecursorRecalculator
, pwiz::analysis::PrecursorRecalculatorDefault
- record
: pwiz::analysis::PepxmlRecordReader::Config
, pwiz::analysis::PepxmlRecordReader::record
, pwiz::peptideid::PeptideID
- Record()
: pwiz::peptideid::PeptideID::Record
- record()
: pwiz::peptideid::PeptideID_flat
, pwiz::peptideid::PeptideID_pepXml
, pwiz::peptideid::PeptideIDMap
- Record()
: pwiz::proteome::IPIFASTADatabase::Record
- record()
: pwiz::util::MSIHandler
- Record()
: pwiz::util::MSIHandler::Record
- recordDelim
: pwiz::identdata::Serializer_Text::Config
- records()
: pwiz::proteome::IPIFASTADatabase
- recordset
: pwiz::analysis::PepxmlRecordReader
- recreate()
: pwiz::msdata::Index_mzML
- rectangle()
: pwiz::util::Image
- red
: pwiz::util::Image::Color
- reference
: pwiz::msdata::SpectrumIterator
, pwiz::proteome::Digestion::const_iterator
, pwiz::util::CharIndexedVectorConstIterator< T >
, pwiz::util::CharIndexedVectorIterator< T >
, pwiz::util::IntegerSet::Iterator
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- reference_
: pwiz::analysis::RTMatches_IsContainedIn< T >
- RefineMassVal()
: pwiz::analysis::SpectrumList_PrecursorRefine
- refinePeaks()
: pwiz::analysis::CwtPeakDetector
- RegexCVMap()
: pwiz::identdata::RegexCVMap
- RegionAnalyzer()
: pwiz::analysis::RegionAnalyzer
- regionAnalyzer_
: pwiz::analysis::RegionSIC
, pwiz::analysis::RegionSlice
, pwiz::analysis::RegionTIC
- RegionSIC()
: pwiz::analysis::RegionSIC
- RegionSlice()
: pwiz::analysis::RegionSlice
- RegionTIC()
: pwiz::analysis::RegionTIC
- relation_map
: pwiz::data::Term
- relations
: pwiz::data::Term
- relaxLowMass
: pwiz::analysis::MS2NoiseFilter::Config
, TestMS2Denoise
- releaseDate
: pwiz::identdata::SearchDatabase
- remove()
: pwiz::analysis::MZRTField< T >
- remove_zeros()
: pwiz::analysis::ExtraZeroSamplesFilter
- removeListener()
: pwiz::util::IterationListenerRegistry
- removeNeutralLossPrecursors
: TestETDMassFilter
- removeNeutralLossSpecies
: pwiz::analysis::PrecursorMassFilter::Config
- removePrecursor
: pwiz::analysis::PrecursorMassFilter::Config
, TestETDMassFilter
- removeReducedChargePrecursors
: pwiz::analysis::PrecursorMassFilter::Config
, TestETDMassFilter
- rend()
: pwiz::proteome::ModificationMap
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- replacementResidue
: pwiz::identdata::SubstitutionModification
- REPORT_DIGIT
: CSHA1
- REPORT_HEX
: CSHA1
- REPORT_HEX_SHORT
: CSHA1
- REPORT_TYPE
: CSHA1
- ReportHash()
: CSHA1
- ReportHashStl()
: CSHA1
- resampledintensity_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- resampledmz_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- Reset()
: CSHA1
- reset()
: pwiz::util::SHA1Calculator
, ralab::base::resample::Bin1D
- Residue()
: pwiz::identdata::Residue
- residueFormula
: pwiz::proteome::AminoAcid::Info::Record
- residues
: pwiz::identdata::MassTable
, pwiz::identdata::Modification
, pwiz::identdata::SearchModification
- resize()
: pwiz::minimxml::SAXParser::saxstring
- resolution_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- result_type
: EnzymePtr_missedCleavages
, EnzymePtr_specificity
- retentionTime
: Goober
, pwiz::data::FrequencyData
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peak
, pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::Scan
, pwiz::msdata::SpectrumInfo
, pwiz::tradata::Target
, pwiz::tradata::Transition
, Simple
- retentionTimeMax()
: Goober
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peakel
, Simple
- retentionTimeMin()
: Goober
, pwiz::data::peakdata::Feature
, pwiz::data::peakdata::Peakel
, Simple
- retentionTimes
: pwiz::tradata::Compound
, pwiz::tradata::Peptide
- retentionTimeSec
: pwiz::data::pepxml::SpectrumQuery
, pwiz::peptideid::PeptideID::Location
, pwiz::peptideid::PeptideID::Record
- reverse_iterator
: pwiz::util::CharIndexedVector< T >
, pwiz::util::mru_list< Item, KeyExtractor >
, pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- Revision()
: pwiz::analysis::Version
, pwiz::identdata::Version
, pwiz::msdata::Version
, pwiz::proteome::Version
, pwiz::tradata::Version
, pwiz::Version
- rhsPeptide
: TestOperator
- roc_data_point
: pwiz::data::pepxml::PeptideProphetSummary
- RootHandler()
: RootHandler
- Row
: ridgeLine
- Rt
: pwiz::identdata::Serializer_Text
- rt
: SetRetentionTime
- rt_
: pwiz::analysis::RTMatches_Contains< T >
- rtime
: rtimeMap
- rTime
: TestScanSummerCalculator
- rTimeStart
: precursorGroup
- rTimeTol_
: pwiz::analysis::SpectrumList_ScanSummer
- RTMatches_Contains()
: pwiz::analysis::RTMatches_Contains< T >
- RTMatches_IsContainedIn()
: pwiz::analysis::RTMatches_IsContainedIn< T >
- rtMax
: Simple
- rtMin
: Simple
- rtRange
: pwiz::analysis::RegionAnalyzer::Config
- rtTolerance
: pwiz::analysis::PeakelGrower_Proximity::Config
, pwiz::analysis::PeakelPicker_Basic::Config
- rtTolerance_
: pwiz::analysis::RTMatches_Contains< T >
, pwiz::analysis::RTMatches_IsContainedIn< T >
- rtVariance
: pwiz::data::peakdata::Feature
- run
: pwiz::msdata::MSData
- Run()
: pwiz::msdata::Run
- RunSummary()
: pwiz::analysis::RunSummary