dataProcessingPtr() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
defaultChargeMax_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
defaultChargeMin_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
defaultIsolationWidth_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
dp_ | pwiz::msdata::SpectrumListWrapper | protected |
empty() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
find(const std::string &id) const | pwiz::msdata::SpectrumList | virtual |
findAbbreviated(const std::string &abbreviatedId, char delimiter='.') const | pwiz::msdata::SpectrumList | virtual |
findNameValue(const std::string &name, const std::string &value) const | pwiz::msdata::SpectrumList | virtual |
findSpotID(const std::string &spotID) const | pwiz::msdata::SpectrumList | virtual |
getMS1RetentionTimes() | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
getParentIndices(const SpectrumPtr, std::vector< int > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
getParentPeaks(const SpectrumPtr, const std::vector< int > &, const double, const double, const double, std::vector< std::vector< double > > &, std::vector< std::vector< double > > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
inner() const | pwiz::msdata::SpectrumListWrapper | inline |
inner_ | pwiz::msdata::SpectrumListWrapper | protected |
innermost() const | pwiz::msdata::SpectrumListWrapper | inline |
instantiatePeakPicker(const std::vector< int > &) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
instantiatePeakPicker(const std::vector< int > &, const double, const double, const double) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
massNeutron | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
maxCharge_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
maxIsotopePeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
maxNumberPeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
minCharge_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
minIsotopePeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
minNumberPeaks | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
MS1retentionTimes | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
mzTol | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
nChainsCheck_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
nSamples | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
override_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
parentsAfter_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
parentsBefore_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
sigVal_ | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
simulatedIntensityRankSum | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
simulatedKLs | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
simulatedSSEs | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
simulateKL(const double, const int, const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
simulateSSE(const int, const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
simulateTotIntensity(const int) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
size() const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
spectrum(size_t index, bool getBinaryData=true) const | pwiz::analysis::SpectrumList_ChargeFromIsotope | virtual |
pwiz::msdata::SpectrumListWrapper::spectrum(size_t index, DetailLevel detailLevel) const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
pwiz::msdata::SpectrumList::spectrum(const SpectrumPtr &seed, bool getBinaryData) const | pwiz::msdata::SpectrumList | virtual |
spectrumIdentity(size_t index) const | pwiz::msdata::SpectrumListWrapper | inlinevirtual |
SpectrumList_ChargeFromIsotope(const msdata::MSData &msd, int maxCharge=3, int minCharge=1, int parentsBefore=2, int parentsAfter=0, double isolationWindow=1.25, int defaultChargeMax=0, int defaultChargeMin=0) | pwiz::analysis::SpectrumList_ChargeFromIsotope | |
SpectrumListWrapper(const SpectrumListPtr &inner) | pwiz::msdata::SpectrumListWrapper | inline |
upperLimitPadding | pwiz::analysis::SpectrumList_ChargeFromIsotope | private |
warn_once(const char *msg) const | pwiz::msdata::SpectrumList | virtual |
~SpectrumList() | pwiz::msdata::SpectrumList | inlinevirtual |