23 #ifndef _TRADATA_IO_HPP_ 24 #define _TRADATA_IO_HPP_ 112 #endif // _TRADATA_IO_HPP_
PWIZ_API_DECL const Modification & modification(CVID cvid)
find a modification by CVID
PWIZ_API_DECL const CV & cv(const std::string &prefix)
returns a CV object for the specified namespace (prefix); currently supported namespaces are: MS UO ...
The XMLWriter class provides simple, tag-level XML syntax writing.
Precursor (Q1) of the transition.
PWIZ_API_DECL void write(minimxml::XMLWriter &writer, const CV &cv)
boost::shared_ptr< Protein > ProteinPtr
PWIZ_API_DECL proteome::Peptide peptide(const Peptide &peptide)
creates a proteome::Peptide from an identdata::Peptide
Information about an ontology or CV source and a short 'lookup' tag to refer to.
Instrument on which transitions are validated.
A peptide or compound that is to be included or excluded from a target list of precursor m/z values...
Instrument configuration used in the validation or optimization of the transitions.
represents a post-translational modification (PTM) modification formula or masses must be provided at...
A possible interpration of the product ion for a transition.
boost::shared_ptr< Compound > CompoundPtr
Chemical compound other than a peptide for which one or more transitions.
represents a peptide or polypeptide (a sequence of amino acids)
Uncontrolled user parameters (essentially allowing free text). Before using these, one should verify whether there is an appropriate CV term available, and if so, use the CV term instead.
PWIZ_API_DECL void read(std::istream &is, CV &cv)
Product (Q3) of the transition.
boost::shared_ptr< Peptide > PeptidePtr
KernelTraitsBase< Kernel >::space_type::abscissa_type x
represents a tag-value pair, where the tag comes from the controlled vocabulary