- p -
- pages
: pwiz::identdata::BibliographicReference
- param
: Root
- param2
: Second
- param3
: Second
- parameters
: pwiz::data::peakdata::Software
, pwiz::data::pepxml::SearchSummary
- paramGroupPtrs
: pwiz::data::ParamContainer
, pwiz::msdata::MSData
- params
: pwiz::analysis::MS2Deisotoper
, pwiz::analysis::MS2NoiseFilter
, pwiz::analysis::PrecursorMassFilter
- parent
: pwiz::identdata::Organization
- parent_file
: pwiz::data::pepxml::DataFilter
- parentIndex
: isotopeChain
- parentsAfter
: TestChargeStateCalculator
- parentsAfter_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsBefore
: TestChargeStateCalculator
- parentsBefore_
: pwiz::analysis::SpectrumList_ChargeFromIsotope
- parentsIsA
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentsPartOf
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- parentTolerance
: pwiz::identdata::SpectrumIdentificationProtocol
- parseCharacters
: pwiz::minimxml::SAXParser::Handler
- partialDiffOK
: pwiz::data::BaseDiffConfig
- passThreshold
: pwiz::identdata::ProteinDetectionHypothesis
, pwiz::identdata::SpectrumIdentificationItem
- pastMaxIndex
: SelectedIndexPredicate
- path
: pwiz::identdata::CVMap
- pathmask
: TestPathmask
- pathnameArray
: TestPathmask
- pattern
: pwiz::identdata::RegexCVMap
- peak
: pwiz::analysis::RegionAnalyzer::SpectrumStats
, pwiz::data::peakdata::HandlerPeak
- peakarea_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakCount
: pwiz::frequency::PeakDetectorMatchedFilter::Score
- peakel
: pwiz::data::peakdata::HandlerPeakel
- peakelGrower_
: pwiz::analysis::FeatureDetectorPeakel
- peakelGrower_Proximity
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakelPicker_
: pwiz::analysis::FeatureDetectorPeakel
- peakelPicker_Basic
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakels
: pwiz::data::peakdata::Feature
- peakExtractor_
: pwiz::analysis::FeatureDetectorPeakel
- peakFamilies
: pwiz::data::peakdata::Scan
- peakFamilyDetector
: pwiz::analysis::PrecursorRecalculatorDefault::Config
- peakFinder_
: pwiz::analysis::PeakExtractor
- peakFinder_SNR
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakFitter_
: pwiz::analysis::PeakExtractor
- peakFitter_Parabola
: pwiz::analysis::FeatureDetectorPeakel::Config
- peakmass_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- peakMaxCorrelationAngle
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- peaks
: pwiz::data::peakdata::Peakel
, pwiz::data::peakdata::PeakFamily
, pwiz::frequency::PeakDetectorMatchedFilter::Score
, pwiz::util::MSIHandler::Record
- peaksCount
: pwiz::msdata::SpectrumIdentityFromMzXML
- peakThresholdFactor
: pwiz::frequency::PeakDetectorMatchedFilter::Config
- peptide
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::pepxml::SearchHit
- peptideEvidence
: pwiz::identdata::SequenceCollection
- peptideEvidencePtr
: pwiz::identdata::PeptideHypothesis
, pwiz::identdata::SpectrumIdentificationItem
- peptideHypothesis
: pwiz::identdata::ProteinDetectionHypothesis
- peptideNextAA
: pwiz::data::pepxml::SearchHit
- peptidePrevAA
: pwiz::data::pepxml::SearchHit
- peptideprophet_summary
: pwiz::data::pepxml::AnalysisSummary
- peptideProphetResult
: pwiz::data::pepxml::AnalysisResult
- peptidePtr
: pwiz::identdata::PeptideEvidence
, pwiz::identdata::SpectrumIdentificationItem
, pwiz::tradata::Target
, pwiz::tradata::Transition
- peptidePtrs
: pwiz::tradata::TraData
- peptides
: pwiz::identdata::SequenceCollection
- peptideSequence
: pwiz::identdata::Peptide
- peptideTerminus
: pwiz::data::pepxml::AminoAcidModification
- pepxmlfile
: pwiz::analysis::PepxmlRecordReader::Config
- pimpl
: pwiz::identdata::DelimReader
, pwiz::identdata::MascotReader
, pwiz::identdata::Pep2MzIdent
, pwiz::peptideid::PeptideID::Iterator
, pwiz::peptideid::PeptideID_flat
, pwiz::peptideid::PeptideID_pepXml
, pwiz::util::DefaultTabHandler
, pwiz::util::MSIHandler
, pwiz::util::TabReader
- poisson
: pwiz::analysis::MS2Deisotoper::Config
- polarity
: pwiz::analysis::SpectrumList_FilterPredicate_Polarity
- polynomialOrder
: TestData
- position
: pwiz::data::pepxml::ModAminoAcidMass
- possible_charges
: TestSpectrumInfo
- post
: pwiz::identdata::PeptideEvidence
- ppm_
: ralab::base::resample::PPMCompFunctor< TReal >
- pre
: pwiz::identdata::PeptideEvidence
- precision
: pwiz::analysis::SpectrumBinaryData::Config
, pwiz::data::BaseDiffConfig
, pwiz::msdata::BinaryDataEncoder::Config
- precisionOverrides
: pwiz::msdata::BinaryDataEncoder::Config
- precursor
: pwiz::msdata::Chromatogram
, pwiz::tradata::Target
, pwiz::tradata::Transition
- precursor_ion_charge
: pwiz::data::pepxml::MixtureModel
- precursor_mz
: TestSpectrumInfo
- precursorCharge
: TestMS2Denoise
- precursorList
: pwiz::analysis::SpectrumList_ScanSummer
- precursorMass
: TestMS2Denoise
- precursorMassType
: pwiz::data::pepxml::SearchSummary
- precursorMZ
: precursorGroup
- precursorMzSet_
: pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
- precursorNeutralMass
: pwiz::data::pepxml::SpectrumQuery
- precursors
: pwiz::msdata::Spectrum
, pwiz::msdata::SpectrumInfo
- precursorTol_
: pwiz::analysis::SpectrumList_ScanSummer
- prediction
: pwiz::tradata::Transition
- prefix
: pwiz::data::OBO
, pwiz::data::Term
- preprocessWithLogarithm
: pwiz::analysis::PeakFinder_SNR::Config
- prior_probability
: pwiz::data::pepxml::MixtureModel
- probability
: pwiz::data::pepxml::PeptideProphetResult
- problem_
: ralab::base::ms::SimplePicker< TReal >
- processingMethods
: pwiz::msdata::DataProcessing
- product
: pwiz::msdata::Chromatogram
, pwiz::tradata::Transition
- products
: pwiz::msdata::Spectrum
- propertyValues
: pwiz::cv::CVTermInfo
, pwiz::data::Term
- protein
: pwiz::analysis::PepxmlRecordReader::record
, pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::SearchHit
- protein_descr
: pwiz::peptideid::PeptideID::Record
- proteinAmbiguityGroup
: pwiz::identdata::ProteinDetectionList
- proteinDescr
: pwiz::data::pepxml::AlternativeProtein
, pwiz::data::pepxml::SearchHit
- proteinDetection
: pwiz::identdata::AnalysisCollection
- proteinDetectionHypothesis
: pwiz::identdata::ProteinAmbiguityGroup
- proteinDetectionListPtr
: pwiz::identdata::AnalysisData
, pwiz::identdata::ProteinDetection
- proteinDetectionProtocol
: pwiz::identdata::AnalysisProtocolCollection
- proteinDetectionProtocolPtr
: pwiz::identdata::ProteinDetection
- proteinListPtr
: pwiz::proteome::ProteomeData
- proteinPtrs
: pwiz::tradata::Peptide
, pwiz::tradata::TraData
- proteins
: pwiz::proteome::ProteinListSimple
- provider
: pwiz::identdata::IdentData
- publication
: pwiz::identdata::BibliographicReference
- publications
: pwiz::tradata::TraData
- publisher
: pwiz::identdata::BibliographicReference