Here is a list of all class members with links to the classes they belong to:
- a -
- a
: CustomPair
, mzrtEqual
- A
: pwiz::data::CalibrationParameters
- a()
: pwiz::proteome::Fragmentation
- a1
: TestFragmentation
- a1Plus2
: TestFragmentation
- A_
: ParametrizedCosine
- a_
: pwiz::frequency::MagnitudeLorentzian
, pwiz::math::Parabola
- a_b
: pwiz::data::Diff< object_type, config_type, object_result_type >
- abbreviation
: pwiz::proteome::AminoAcid::Info::Record
- abscissa_type
: pwiz::math::MatchedFilter::KernelTraits< Kernel >
, pwiz::math::MatchedFilter::ProductSpace< X, Y >
, pwiz::math::MatchedFilter::SampledData< space_type >
- abundance
: pwiz::chemistry::detail::Isotope
, pwiz::chemistry::MassAbundance
, pwiz::proteome::AminoAcid::Info::Record
- accept()
: EvenMS2Predicate
, EvenPredicate
, FTSieve
, HasBinaryDataPredicate
, pwiz::analysis::ProteinList_Filter::Predicate
, pwiz::analysis::ProteinList_FilterPredicate_IdSet
, pwiz::analysis::ProteinList_FilterPredicate_IndexSet
, pwiz::analysis::SpectrumList_3D
, pwiz::analysis::SpectrumList_ChargeStateCalculator
, pwiz::analysis::SpectrumList_Filter::Predicate
, pwiz::analysis::SpectrumList_FilterPredicate_ActivationType
, pwiz::analysis::SpectrumList_FilterPredicate_AnalyzerType
, pwiz::analysis::SpectrumList_FilterPredicate_ChargeStateSet
, pwiz::analysis::SpectrumList_FilterPredicate_DefaultArrayLengthSet
, pwiz::analysis::SpectrumList_FilterPredicate_IndexSet
, pwiz::analysis::SpectrumList_FilterPredicate_MSLevelSet
, pwiz::analysis::SpectrumList_FilterPredicate_MzPresent
, pwiz::analysis::SpectrumList_FilterPredicate_Polarity
, pwiz::analysis::SpectrumList_FilterPredicate_PrecursorMzSet
, pwiz::analysis::SpectrumList_FilterPredicate_ScanEventSet
, pwiz::analysis::SpectrumList_FilterPredicate_ScanNumberSet
, pwiz::analysis::SpectrumList_FilterPredicate_ScanTimeRange
, pwiz::analysis::SpectrumList_IonMobility
, pwiz::analysis::SpectrumList_LockmassRefiner
, pwiz::analysis::SpectrumList_MetadataFixer
, pwiz::analysis::SpectrumList_PeakFilter
, pwiz::analysis::SpectrumList_PeakPicker
, pwiz::analysis::SpectrumList_Smoother
, pwiz::analysis::SpectrumList_TitleMaker
, pwiz::analysis::SpectrumList_ZeroSamplesFilter
, pwiz::identdata::Reader
, pwiz::msdata::Reader
, pwiz::msdata::SpectrumIterator::Sieve
, pwiz::proteome::Reader
, pwiz::tradata::Reader
, SelectedIndexPredicate
- acceptZeroLengthSpectra
: pwiz::msdata::Reader::Config
- access()
: pwiz::minimxml::SAXParser::Handler::Attributes
- accession
: pwiz::identdata::DBSequence
, pwiz::identdata::dbsequence_p
, pwiz::msdata::MSData
- activation
: pwiz::msdata::Precursor
- activityDate
: pwiz::identdata::ProteinDetection
, pwiz::identdata::SpectrumIdentification
- AdaptedErrorDerivative()
: pwiz::frequency::DerivativeTest::AdaptedErrorDerivative< value_type >
- AdaptedErrorFunction()
: pwiz::frequency::DerivativeTest::AdaptedErrorFunction< value_type >
- add()
: pwiz::minimxml::XMLWriter::Attributes
- additionalSearchParams
: pwiz::identdata::SpectrumIdentificationProtocol
- addListener()
: pwiz::util::IterationListenerRegistry
- addListenerWithTimer()
: pwiz::util::IterationListenerRegistry
- addParamMap()
: pwiz::identdata::Pep2MzIdent
- adjustUnknownTimeZonesToHostTimeZone
: pwiz::msdata::Reader::Config
- affiliations
: pwiz::identdata::Person
- algorithm_
: pwiz::analysis::SpectrumList_PeakPicker
, pwiz::analysis::SpectrumList_Smoother
- allDataProcessingPtrs()
: pwiz::msdata::MSData
- allNttProb
: pwiz::data::pepxml::PeptideProphetResult
- allocator_type
: pwiz::util::shared_map< keyT, valueT, _Pr, _Alloc >
, pwiz::util::virtual_map< keyT, valueT, _Pr, _Alloc >
- alpha()
: pwiz::frequency::MagnitudeLorentzian
, pwiz::frequency::TruncatedLorentzianParameters
- AlternativeProtein()
: pwiz::data::pepxml::AlternativeProtein
- alternativeProteins
: pwiz::data::pepxml::SearchHit
- am_
: ralab::base::resample::Convert2Dense
, ralab::base::resample::SamplingWith
- AmbiguousResidue()
: pwiz::identdata::AmbiguousResidue
- ambiguousResidue
: pwiz::identdata::MassTable
- aminoAcid
: pwiz::data::pepxml::AminoAcidModification
- AminoAcidModification()
: pwiz::data::pepxml::AminoAcidModification
- aminoAcidModifications
: pwiz::data::pepxml::SearchSummary
- aN
: TestFragmentation
- analsysis
: pwiz::data::pepxml::AnalysisTimestamp
- analysis
: pwiz::data::pepxml::AnalysisResult
, pwiz::data::pepxml::AnalysisSummary
, pwiz::data::pepxml::PeptideProphetResult
- analysisCollection
: pwiz::identdata::IdentData
- analysisData
: pwiz::identdata::DataCollection
- analysisParams
: pwiz::identdata::ProteinDetectionProtocol
- analysisProtocolCollection
: pwiz::identdata::IdentData
- AnalysisResult()
: pwiz::data::pepxml::AnalysisResult
- analysisResult
: pwiz::data::pepxml::SearchHit
- analysisSampleCollection
: pwiz::identdata::IdentData
- AnalysisSoftware()
: pwiz::identdata::AnalysisSoftware
- analysisSoftwareList
: pwiz::identdata::IdentData
- analysisSoftwarePtr
: pwiz::identdata::ProteinDetectionProtocol
, pwiz::identdata::Provider
, pwiz::identdata::SpectrumIdentificationProtocol
- analysisSummary
: pwiz::data::pepxml::MSMSPipelineAnalysis
- analyze()
: pwiz::analysis::MSDataAnalyzerDriver
, pwiz::data::FrequencyData
- analyzer()
: pwiz::msdata::ComponentList
, pwiz::msdata::LegacyAdapter_Instrument
- analyzer_
: pwiz::analysis::MSDataAnalyzerDriver
- angle()
: pwiz::math::MatchedFilter::Correlation< Y >
- aNPlus2
: TestFragmentation
- area
: pwiz::analysis::Peak
, pwiz::data::peakdata::Peak
- area_
: ralab::base::ms::PeakPicker< TReal, TIntegrator >
- argsFormat()
: pwiz::analysis::analyzer_strings< analyzer_type >
, pwiz::analysis::analyzer_strings< MetadataReporter >
, pwiz::analysis::analyzer_strings< RegionSIC >
, pwiz::analysis::analyzer_strings< RegionSlice >
, pwiz::analysis::analyzer_strings< RegionTIC >
, pwiz::analysis::analyzer_strings< RunSummary >
, pwiz::analysis::analyzer_strings< SpectrumBinaryData >
, pwiz::analysis::analyzer_strings< SpectrumTable >
- argsUsage()
: pwiz::analysis::analyzer_strings< analyzer_type >
, pwiz::analysis::analyzer_strings< MetadataReporter >
, pwiz::analysis::analyzer_strings< RegionSIC >
, pwiz::analysis::analyzer_strings< RegionSlice >
, pwiz::analysis::analyzer_strings< RegionTIC >
, pwiz::analysis::analyzer_strings< RunSummary >
, pwiz::analysis::analyzer_strings< SpectrumBinaryData >
, pwiz::analysis::analyzer_strings< SpectrumTable >
- argumentCount()
: pwiz::frequency::DerivativeTest::AdaptedErrorDerivative< value_type >
, pwiz::frequency::DerivativeTest::AdaptedErrorFunction< value_type >
, pwiz::frequency::DerivativeTest::ParametrizedDerivativeSlice< value_type >
, pwiz::frequency::DerivativeTest::ParametrizedFunctionSlice< value_type >
, pwiz::frequency::DerivativeTest::VectorFunction< value_type >
- arrayExampleCount_
: pwiz::msdata::TextWriter
- assumedCharge
: pwiz::data::pepxml::SpectrumQuery
- atomicNumber
: pwiz::chemistry::detail::Element
, pwiz::chemistry::Element::Info::Record
- atomicWeight
: pwiz::chemistry::detail::Element
, pwiz::chemistry::Element::Info::Record
- Attribute
: pwiz::data::peakdata::Peak
- attribute()
: pwiz::minimxml::SAXParser::Handler::Attributes::attribute
- Attribute_Decay
: pwiz::data::peakdata::Peak
- Attribute_Frequency
: pwiz::data::peakdata::Peak
- attribute_list
: pwiz::minimxml::SAXParser::Handler::Attributes
- Attribute_Phase
: pwiz::data::peakdata::Peak
- Attributes
: pwiz::data::peakdata::Peak
- attributes
: pwiz::data::peakdata::Peak
- Attributes
: pwiz::minimxml::SAXParser::Handler::Attributes::attribute
, pwiz::minimxml::SAXParser::Handler::Attributes
- attrs
: pwiz::minimxml::SAXParser::Handler::Attributes
- auditCollection
: pwiz::identdata::IdentData
- author
: pwiz::data::pepxml::PeptideProphetSummary
- authors
: pwiz::identdata::BibliographicReference
- autoUnescape
: pwiz::minimxml::SAXParser::Handler::Attributes
- autoUnescapeAttributes
: pwiz::minimxml::SAXParser::Handler
- autoUnescapeCharacters
: pwiz::minimxml::SAXParser::Handler
- averageDeltaMass()
: pwiz::proteome::Modification
, pwiz::proteome::ModificationList
, pwiz::proteome::ModificationMap
- averageMassDelta
: pwiz::tradata::Modification
- avgMass
: TestAminoAcid
, TestFormula
, TestModifiedPeptide
- avgMassDelta
: pwiz::identdata::Modification
, pwiz::identdata::SubstitutionModification
- avgMassNeutral
: TestPeptide
- avgMassPlus1
: TestPeptide
- avgMassPlus2
: TestPeptide