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pwiz::identdata::SearchModification Struct Reference

Implementation of SearchModificationType from the mzIdentML schema. More...

#include <IdentData.hpp>

Inheritance diagram for pwiz::identdata::SearchModification:
pwiz::data::ParamContainer

Public Member Functions

 SearchModification ()
 
bool empty () const
 
- Public Member Functions inherited from pwiz::data::ParamContainer
CVParam cvParam (CVID cvid) const
 finds cvid in the container: More...
 
CVParam cvParamChild (CVID cvid) const
 finds child of cvid in the container: More...
 
std::vector< CVParamcvParamChildren (CVID cvid) const
 finds all children of cvid in the container: More...
 
bool hasCVParam (CVID cvid) const
 returns true iff cvParams contains exact cvid (recursive) More...
 
bool hasCVParamChild (CVID cvid) const
 returns true iff cvParams contains a child (is_a) of cvid (recursive) More...
 
UserParam userParam (const std::string &) const
 finds UserParam with specified name More...
 
void set (CVID cvid, const std::string &value="", CVID units=CVID_Unknown)
 set/add a CVParam (not recursive) More...
 
void set (CVID cvid, double value, CVID units=CVID_Unknown)
 set/add a CVParam (not recursive) More...
 
void set (CVID cvid, int value, CVID units=CVID_Unknown)
 set/add a CVParam (not recursive) More...
 
template<typename value_type >
void set (CVID cvid, value_type value, CVID units=CVID_Unknown)
 set/add a CVParam (not recursive) More...
 
bool empty () const
 returns true iff the element contains no params or param groups More...
 
void clear ()
 clears the collections More...
 
bool operator== (const ParamContainer &that) const
 returns true iff this and that have the exact same cvParams and userParams More...
 
bool operator!= (const ParamContainer &that) const
 returns !(this==that) More...
 
template<>
void set (CVID cvid, bool value, CVID units)
 special case for bool (outside the class for gcc 3.4, and inline for msvc) More...
 

Public Attributes

bool fixedMod
 
double massDelta
 
std::vector< char > residues
 
CVParam specificityRules
 
- Public Attributes inherited from pwiz::data::ParamContainer
std::vector< ParamGroupPtrparamGroupPtrs
 a collection of references to ParamGroups More...
 
std::vector< CVParamcvParams
 a collection of controlled vocabulary terms More...
 
std::vector< UserParamuserParams
 a collection of uncontrolled user terms More...
 

Detailed Description

Implementation of SearchModificationType from the mzIdentML schema.

Filters applied to the search database. The filter must include at least one of Include and Exclude. If both are used, it is assumed that inclusion is performed first.

Definition at line 388 of file IdentData.hpp.

Constructor & Destructor Documentation

§ SearchModification()

pwiz::identdata::SearchModification::SearchModification ( )

Member Function Documentation

§ empty()

bool pwiz::identdata::SearchModification::empty ( ) const

Member Data Documentation

§ fixedMod

bool pwiz::identdata::SearchModification::fixedMod

§ massDelta

double pwiz::identdata::SearchModification::massDelta

§ residues

std::vector<char> pwiz::identdata::SearchModification::residues

§ specificityRules

CVParam pwiz::identdata::SearchModification::specificityRules

The documentation for this struct was generated from the following file: