class Ras3DReader extends PolygonFileReader
Modifier and Type | Field and Description |
---|---|
private boolean |
asQuads |
(package private) java.util.Map<java.lang.String,java.lang.Integer> |
htVertices |
private int |
nPolygons |
private java.lang.String |
pmeshError |
private java.lang.String |
type |
nTriangles, nVertices
allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes
Constructor and Description |
---|
Ras3DReader() |
Modifier and Type | Method and Description |
---|---|
private int |
getPoint(java.lang.String[] tokens,
int i) |
(package private) void |
getSurfaceData() |
(package private) void |
init2(SurfaceGenerator sg,
java.io.BufferedReader br) |
protected void |
init2PR(SurfaceGenerator sg,
java.io.BufferedReader br) |
private boolean |
readVertices() |
protected boolean |
readVerticesAndPolygons() |
protected void |
setHeader() |
init2PFR, readSurfaceData, readVolumeData, readVolumeParameters
closeReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo
addTriangleCheck, addVC, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, discardTempDataSR, excludeMaximumSet, excludeMinimumSet, finalizeMapping, getColorPhaseIndex, getMinMaxMappedValues, getPlane, getPlane2, getSPF, getSurfaceAtomIndex, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, getValue2, getValueAtPoint, gotoAndReadVoxelData, gotoData, initializeMapping, initializeVolumetricData, initPlanes, initSR, jvxlUpdateInfo, newVoxelDataCube, postProcessVertices, readAndSetVolumeParameters, readColorData, resetIsosurface, selectPocket, setBBox, setVectorAnisotropy, setVertexAnisotropy, setVolumeDataV, setVolumetricAnisotropy, setVolumetricOriginAnisotropy, slabIsosurface, updateSurfaceData, updateTriangles
private java.lang.String pmeshError
private java.lang.String type
private boolean asQuads
private int nPolygons
java.util.Map<java.lang.String,java.lang.Integer> htVertices
void init2(SurfaceGenerator sg, java.io.BufferedReader br)
init2
in class SurfaceFileReader
protected void init2PR(SurfaceGenerator sg, java.io.BufferedReader br)
protected void setHeader()
void getSurfaceData() throws java.lang.Exception
getSurfaceData
in class PolygonFileReader
java.lang.Exception
protected boolean readVerticesAndPolygons()
private boolean readVertices() throws java.lang.Exception
java.lang.Exception
private int getPoint(java.lang.String[] tokens, int i)