public interface BNode extends Node
Modifier and Type | Method and Description |
---|---|
int |
getAtomNumber() |
char |
getBioSmilesType() |
java.lang.String |
getBioStructureTypeName() |
int |
getChainID() |
java.lang.String |
getChainIDStr() |
boolean |
getCrossLinkVector(javajs.util.Lst<java.lang.Integer> vReturn,
boolean crosslinkCovalent,
boolean crosslinkHBond) |
java.lang.String |
getGroup1(char c0) |
java.lang.String |
getGroup3(boolean allowNull) |
void |
getGroupBits(BS bs) |
int |
getOffsetResidueAtom(java.lang.String name,
int offset) |
int |
getResno() |
boolean |
isCrossLinked(BNode node) |
boolean |
isDeleted() |
boolean |
isLeadAtom() |
boolean |
isPurine() |
boolean |
isPyrimidine() |
findAtomsLike, getAtomicAndIsotopeNumber, getAtomName, getAtomSite, getAtomType, getBondCount, getBondedAtomIndex, getCovalentBondCount, getCovalentHydrogenCount, getEdges, getElementNumber, getFormalCharge, getImplicitHydrogenCount, getIndex, getIsotopeNumber, getModelIndex, getValence, set
int getAtomNumber()
getAtomNumber
in interface Node
java.lang.String getBioStructureTypeName()
java.lang.String getGroup1(char c0)
java.lang.String getGroup3(boolean allowNull)
int getResno()
int getChainID()
java.lang.String getChainIDStr()
int getOffsetResidueAtom(java.lang.String name, int offset)
boolean getCrossLinkVector(javajs.util.Lst<java.lang.Integer> vReturn, boolean crosslinkCovalent, boolean crosslinkHBond)
void getGroupBits(BS bs)
boolean isLeadAtom()
boolean isCrossLinked(BNode node)
boolean isPurine()
boolean isPyrimidine()
boolean isDeleted()
char getBioSmilesType()